Module: Consensus Sequence Strip

Full package name: mesquite.categ.ConsensusSequenceStrip.ConsensusSequenceStrip
Duty: Data column names panel assistant (mesquite.lib.duties.DataColumnNamesAssistant)

Module Explanation

Displays a consensus sequence as in info strip in a character matrix editor.

Author(s): Wayne P. Maddison and David R. Maddison
Version 3.70

Commands of Consensus Sequence Strip

toggleSelectedOnly
- Explanation: Sets whether or not only selected taxa are included are all taxa.
- Parameters: [on or off]
toggleColorByAA
- Explanation: Sets whether or not to show nucleotides by the color of their amino acid.
- Parameters: [on or off]
toggleEmphasizeLessDegenerateAAs
- Explanation: Sets whether or not less degenerate amino acids should be emphasized.
- Parameters: [on or off]
toggleGrayIfGaps
- Explanation: Sets whether or not to show the consensus cell as gray if there are any gaps in any taxon.
- Parameters: [on or off]
remove
- Explanation: Removes the Consensus Strip
moveToMatrix
- Explanation: Moves consensus to be a new sequence in the matrix
suspend
- Explanation: Suspends calculations
resume
- Explanation: Resumes calculations
setStateCalculator
- Explanation: Sets the calculator of a state for each character
- Parameters: [name of state calculator module]
logLastResultString
- Explanation: Logs last result string
getLastResultString
- Explanation: Returns last result string
getLastResult
- Explanation: Returns last MesquiteNumber result