Module scripting commands

General scripting commands

Module: Gene Duplication-Extinction (gene tree)

Full package name: mesquite.coalesce.DuplicationsExtinctionsG.DuplicationsExtinctionsG
Duty: Number for Tree (mesquite.lib.duties.NumberForTree)

Module Explanation

Counts the number of duplication and extinction events for gene tree implied by a containing species tree

Author(s): Wayne P. Maddison and David R. Maddison
Version 3.70

Commands of Gene Duplication-Extinction (gene tree)

countDE
- Explanation: Sets counting mode
countD
- Explanation: Sets counting mode
countE
- Explanation: Sets counting mode
setTreeSource
- Explanation: Sets the source of the species tree
- Parameters: [name of module]
logLastResultString
- Explanation: Logs last result string
getLastResultString
- Explanation: Returns last result string
getLastResult
- Explanation: Returns last MesquiteNumber result