Manual
Modules Loaded
Module scripting commands
General scripting commands
Scripting
Module: Gene Duplication-Extinction (species tree)
Full package name: mesquite.coalesce.DuplicationsExtinctionsSp.DuplicationsExtinctionsSp
Duty: Number for Tree (mesquite.lib.duties.NumberForTree)
Module Explanation
Counts the number of duplication and extinction events for species tree implied by a contained gene tree
Author(s): Wayne P. Maddison and David R. Maddison
Version 3.70
Commands of Gene Duplication-Extinction (species tree)
countDE
Explanation:
Sets counting mode
countD
Explanation:
Sets counting mode
countE
Explanation:
Sets counting mode
setTreeSource
Explanation:
Sets the source of the gene tree
Parameters:
[name of module]
nextContained
Explanation:
Goes to next contained gene tree
previousContained
Explanation:
Goes to previous contained gene tree
setContained
Explanation:
Goes to contained gene tree
Parameters:
[number of tree]
logLastResultString
Explanation:
Logs last result string
getLastResultString
Explanation:
Returns last result string
getLastResult
Explanation:
Returns last MesquiteNumber result
