Module: Forward/Backward Rates

Full package name: mesquite.stochchar.GainLossRates.GainLossRates
Duty: Number for Character and Tree (mesquite.lib.duties.NumberForCharAndTree)

Module Explanation

Uses maximum likelihood to estmate the rates of forward and backward changes (0 to 1 and 1 to 0 changes respectively), or alternatively the overall rate and the bias in gains versus losses, using the AsymmMk model on a tree for a given character.

Author(s): Wayne P. Maddison and David R. Maddison
Version 3.70

Commands of Forward/Backward Rates

setReportMode
- Explanation: Sets the report mode
logLastResultString
- Explanation: Logs last result string
getLastResultString
- Explanation: Returns last result string
getLastResult
- Explanation: Returns last MesquiteNumber result