Full package name: mesquite.molec.LowercaseEnds.LowercaseEnds Duty: Selection Assistant for Data Window (mesquite.lib.duties.DataWSelectionAssistant)
Module Explanation
Selects ends of a DNA sequence up to the first block of N sites in a row with uppercase (confident) symbols (the user chooses N). Assuming that lowercase letters are used for less certain base calls, this can be used to select and then trim (by painting with gaps) poorly-sequenced terminal regions.
Author(s): Wayne P. Maddison and David R. Maddison
