Manual
Modules Loaded
Module scripting commands
General scripting commands
Scripting
Module: Uncorrected (p) distance (DNA)
Full package name: mesquite.distance.PDistance.PDistance
Duty: (mesquite.distance.lib.TaxaDistFromMatrix)
Module Explanation
Uncorrected (p) distance from a DNA matrix.
Author(s): Wayne P. Maddison and David R. Maddison
Version 3.70
Commands of Uncorrected (p) distance (DNA)
toggleTransversionsOnly
Explanation:
Sets whether only transversions are counted.
Parameters:
[on; off]
toggleTransitionsOnly
Explanation:
Sets whether only transitions are counted.
Parameters:
[on; off]
toggleCountDifferencesIfGapInPair
Explanation:
Sets whether sites at which one element of the pair of sequences being compared has a gap are not excluded or are.
Parameters:
[on; off]
toggleEstimateAmbiguityDifferences
Explanation:
Sets whether sites with missing data, gaps, or ambiguities have differences estimated by other sites or are ignored.
Parameters:
[on; off]
logLastResultString
Explanation:
Logs last result string
getLastResultString
Explanation:
Returns last result string
getLastResult
Explanation:
Returns last MesquiteNumber result
