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Module: Pagel's 1994 test of correlated (discrete) character evolution
Full package name: mesquite.correl.Pagel94.Pagel94
Duty: Number for Two Characters and Tree (mesquite.lib.duties.NumberFor2CharAndTree)
Module Explanation
A statistical test, described in Pagel(1994), for nonindependent evolution of two discrete, binary characters
Author(s): Peter E. Midford & Wayne P. Maddison
Version 3.70
Commands of Pagel's 1994 test of correlated (discrete) character evolution
setSeed
Explanation:
Sets the random number seed to that passed
Parameters:
[long integer seed]
setConstrainedModelToUse
Explanation:
Sets the effect to test for
setNumIterations
Explanation:
Sets the number of iterations for likelihood search
Parameters:
[number]
setSimCount
Explanation:
Sets the number of simulations to run to estimate p-value of likelihood difference
Parameters:
[nonnegative integer]
togglePresentPValue
Explanation:
Sets whether or not P values are to be presented
Parameters:
[on; off]
logLastResultString
Explanation:
Logs last result string
getLastResultString
Explanation:
Returns last result string
getLastResult
Explanation:
Returns last MesquiteNumber result
