Full package name: mesquite.pairwise.PairwiseComparison.PairwiseComparison Duty: Analysis Assistant for Tree Display (Allows multiple) (mesquite.lib.duties.TreeDisplayAssistantMA)
Module Explanation
Performs pairwise comparison character correlation tests. Phylogenetically independent pairs are chosen, and the states of two binary characters are compared to see if they are correlated among these pairs.
Author(s): Wayne P. Maddison and David R. Maddison
Version 3.70
Commands of Pairwise Comparison
nextPairing
Explanation: Goes to next pairing
setInitialOffsetX
Explanation: Sets the initial horizontal offset of the legend
Parameters: [offset]
setInitialOffsetY
Explanation: Sets the initial vertical offset of the legend
Parameters: [offset]
setPairing
Explanation: Sets which pairing is shown
Parameters: [pairing number]
showStates
Explanation: Sets whether or not the states used as the basis for the pairing and tests are shown at the tips of the tree
Parameters: [on or off]
setPairSelector
Explanation: Sets the module used to select pairs of taxa
Parameters: [name of module]
setCharacterSourceA
Explanation: Sets module supplying characters
Parameters: [name of module]
getCharacterSourceA
Explanation: Returns module supplying characters A
setCharacterSourceB
Explanation: Sets module supplying characters
Parameters: [name of module]
getCharacterSourceB
Explanation: Returns module supplying characters B
nextCharacterA
Explanation: Goes to next independent variable
previousCharacterA
Explanation: Goes to previous independent variable
setCharacterA
Explanation: Sets which character is used as independent variable
nextCharacterB
Explanation: Goes to next dependent variable
previousCharacterB
Explanation: Goes to previous dependent variable
setCharacterB
Explanation: Sets which character is used as dependent variable
