Module: Parsimony Ordered

Full package name: mesquite.parsimony.ParsimonyOrdered.ParsimonyOrdered
Duty: Ancestral states for parsimony model (mesquite.parsimony.lib.ParsAncStatesForModel)

Module Explanation

Reconstructs the ancestral states of categorical characters using parsimony, under the assumption that states are ordered (ordered, Farris or Wagner parsimony; additive). Also counts parsimony steps.

Author(s): Wayne P. Maddison and David R. Maddison
Version 3.70

Commands of Parsimony Ordered

showFinalStates
- Explanation: Sets output to be the final MPR sets
showDownStates
- Explanation: Sets output to be downpass sets
showUpStates
- Explanation: Sets output to be uppass sets
logLastResultString
- Explanation: Logs last result string
getLastResultString
- Explanation: Returns last result string
getLastResult
- Explanation: Returns last MesquiteNumber result