Full package name: mesquite.trees.SearchTreeToolAssistant.SearchTreeToolAssistant Duty: INIT Assistant for Tree Display (mesquite.lib.duties.TreeDisplayAssistantI)
Module Explanation
Supplies a tool for tree windows that searches for a better branch arrangement within clade touched.
Author(s): Wayne P. Maddison and David R. Maddison
Version 3.70
Commands of Search within clade
setNumberTask
Explanation: Sets the objection function that calculates a value for each tree.
Parameters: [name of module calculating value]
setSwapTask
Explanation: Sets the method of rearrangement of a tree.
Parameters: [name of module rearranging tree]
smallerIsBetter
Explanation: Sets whether the search considers tree with smaller values better
Parameters: [on off]
liveUpdates
Explanation: Sets whether tree rearrangements are visible as they happen and whether or not other things that depend upon the tree (e.g., charts, legends) are recalculated as rearrangements happen.
