ManualModules LoadedModule scripting commandsGeneral scripting commandsScripting

Module: Shared Partitions

Full package name: mesquite.treefarm.SharedPartitions2Trees.SharedPartitions2Trees
Duty: Distance between Two Trees (mesquite.lib.duties.DistanceBetween2Trees)

Module Explanation

Calculates the number of shared partitions between two trees. If used as a distance, then converted by subtracting shared partitions from the maximum possible, i.e. the number of partitions in the subtree of shared taxa in the tree with the most partitions.

Commands of Shared Partitions