Module: Speciation/extinction Likelihood Calculator

Full package name: mesquite.diverse.SpecExtincMLCalculator.SpecExtincMLCalculator
Duty: (mesquite.diverse.SpecExtincMLCalculator.SpecExtincMLCalculator)

Module Explanation

Calculates likelihoods using a speciation/extinction model reduced from the BiSSE model (Maddison, Midford & Otto 2007)

Author(s): Peter E. Midford & Wayne P. Maddison
Version 3.70

Commands of Speciation/extinction Likelihood Calculator

setUnderflowCheckFreq
- Explanation: Sets the frequency of checking for underflow
- Parameters: [integer, 1 or greater]
showParamExplorer
- Explanation: Show Parameter Explorer
conditionOnSurvival
- Explanation: Sets whether to condition by survival
- Parameters: [on; off]
setStepCount
- Explanation: Sets the number of steps per branch
- Parameters: [integer, 1 or greater]
toggleIntermediatesToConsole
- Explanation: Sets whether to write intermediate branch values to console
- Parameters: [on; off]
logLastResultString
- Explanation: Logs last result string
getLastResultString
- Explanation: Returns last result string
getLastResult
- Explanation: Returns last MesquiteNumber result