Full package name: mesquite.treefarm.SplitFrequencies.SplitFrequencies Duty: Numbers for Nodes of Tree (mesquite.lib.duties.NumbersForNodes)
Module Explanation
Calculates, for each clade in the tree, the frequency of that split among the trees in a specified tree source, or the frequency of the contradictory clade with the highest frequency, or the difference.
Author(s): Wayne P. Maddison and David R. Maddison
Version 3.70
Commands of Clade Frequencies in Trees
setTreeSource
Explanation: Sets the module supplying tree blocks
Parameters: [name of module]
getTreeSource
Explanation: Returns treeSourceTask
toggleUseWeights
Explanation: Toggles use of weights
calculateCladeFreq
Explanation: Sets the value to be calculated to the frequency of a node in the set of trees
calculateMaxContradictory
Explanation: Sets the value to be calculated to the maximum frequency of a contradictory clade in the set of trees
calculateDifference
Explanation: Sets the value to be calculated to the difference between frequency of a node and the maximum frequency of a contradictory clade in the set of trees
