Full package name: mesquite.ancstates.TraceCharacterHistory.TraceCharacterHistory Duty: Analysis Assistant for Tree Display (Allows multiple) (mesquite.lib.duties.TreeDisplayAssistantMA)
Module Explanation
Traces a history of character evolution on the nodes of a drawn tree.
Author(s): Wayne P. Maddison and David R. Maddison
Version 3.70
Commands of Trace Character History
setDisplayMode
Explanation: Sets module used to display character history
Parameters: [name of module]
modifyColors
Explanation: Sets modified colors
revertColors
Explanation: Reverts colors to defaults
saveModColors
Explanation: Remembers Modified Colors
toggleShowLegend
Explanation: Sets whether or not the legend is shown
Parameters: [on = show; off]
exportDifferences
Explanation: Exports a text file summarizing differences from one node to the next
toggleShowWindow
Explanation: Sets whether or not the trace window is shown
Parameters: [on = show; off]
toggleWeights
Explanation: Sets whether or not the weights on states are shown (e.g. relative frequencies or likelihoods)
Parameters: [on; off]
toggleGray
Explanation: Sets whether or not to use grayscale if continuous
Parameters: [on; off]
setColorMode
Explanation: Sets colorMode if continuous
Parameters: [on; off]
setNumBins
Explanation: Sets number of bins for continuous
Parameters: [number of bins]
setBins
Explanation: Sets bins for continuous
Parameters: [vector of bins]
suspend
Explanation: Suspends calculations
resume
Explanation: Resume calculations
setInitialOffsetX
Explanation: Sets initial horizontal offset of legend from home position
Parameters: [offset in pixels]
setInitialOffsetY
Explanation: Sets initial vertical offset of legend from home position
Parameters: [offset in pixels]
setLegendWidth
Explanation: Sets initial width of legend
Parameters: [width in pixels]
setLegendHeight
Explanation: Sets initial height of legend
Parameters: [height in pixels]
setHistorySource
Explanation: Sets module supplying character histories
Parameters: [name of module]
newAssistant
Explanation: NOT YET USED
nextCharacter
Explanation: Goes to next character history
previousCharacter
Explanation: Goes to previous character history
chooseCharacter
Explanation: Queries user about which character history to use
setCharacter
Explanation: Sets which character history to use
Parameters: [history number]
setMapping
Explanation: Sets which mapping to use
Parameters: [mapping number]
getNumberOfHistories
Explanation: Returns the number of character histories available in the current character history source
