Module: Maximum likelihood reconstruct (Generic categorical)
Full package name: mesquite.stochchar.zMargLikeCateg.zMargLikeCateg Duty: Maximum Likelihood ancestral states (marginal reconstruction) with clade-local ability (mesquite.stochchar.lib.MargLikeAncStCLForModel)
Module Explanation
Assesses likelihood for categorical characters, and r econstructs ancestral states by the maximum marginal probability ("MLE") criterion
Author(s): Wayne P. Maddison and David R. Maddison
Version 3.70
Commands of Maximum likelihood reconstruct (Generic categorical)
setDecision
Explanation: Sets the threshold T for deciding whether ancestral state is included among estimates; states with likelihoods T times less than best are not included in estimate
Parameters: [threshold]
setReportMode
Explanation: Sets the report mode
setRootMode
Explanation: Sets the root mode
setUnderflowCheckFreq
Explanation: Sets the frequency of checking for underflow
