Menus and Controls for Search

Below are listed the current menus and controls (such as buttons) pertaining to the window Search

Controls (including buttons and tools)
Menus

Controls (including buttons and tools)

Menus

File

New (for module 'Mesquite') (command: newProject)
- Explanation: Makes a new file (as a new project)
Open File... (for module 'Mesquite') (command: openFile)
- Explanation: Opens file on disk. The file will be opened as a separate project (i.e. not sharing information) from any other files currently open.
Open Other (for module 'Mesquite') (command: openGeneral)
- URL... (command: openGeneral)
  - Explanation: Opens module for project reading or making.. Uses: Open URL (Opens a file on the web as if it were a local data file)
- Tree from ToL Web Project... (command: openGeneral)
  - Explanation: Opens module for project reading or making.. Uses: Tree from ToL Web Project... (Gets the tree for the page of the Tree of Life Web Project for the group specified.)
Close Window (for module 'Window Holder') (command: closeWindow)
- Explanation: Closes the window (calls owner module's windowGoAway)
Save File... (for module 'Mesquite') (command: explainNoSave)
Save Window as Text... (for module 'Window Holder') (command: saveTextToFile)
- Explanation: Saves the text version of the window to a file
Print Window... (for module 'Mesquite') (command: printWindow)
- Explanation: Prints the contents of the window
Save Window as PDF... (for module 'Mesquite') (command: printToPDF)
- Explanation: Sends the contents of the window to a PDF file
Activate/Deactivate Packages (for module 'Mesquite')
- Use All Installed Packages (for module 'Mesquite') (command: setConfigAll)
  - Explanation: Indicates that all installed modules are to be loaded at startup
- Choose Configuration... (for module 'Mesquite') (command: setConfig)
  - Explanation: Sets the packages of modules loaded at startup, using a configuration file
- Delete Configuration... (for module 'Mesquite') (command: deleteConfig)
  - Explanation: Brings up a dialog box by which user-defined configuration files can be deleted
- Define Configuration... (for module 'Mesquite') (command: defineConfig)
  - Explanation: Defines a set of packages to be loaded at startup, using a configuration file
Macros (for module 'Mesquite')
- Show Macro List... (for module 'Mesquite') (command: showMacros)
  - Explanation: Brings up a dialog box to examine macro files
- Edit Macro Information... (for module 'Mesquite') (command: editMacroInfo)
  - Explanation: Brings up a dialog box to change name and explanation of user-saved macros
- Delete Auto-saved Macros... (for module 'Mesquite') (command: deleteAutoMacros)
  - Explanation: Brings up a dialog box by which automatically-defined macros files can be deleted
Rename Log File... (for module 'Mesquite') (command: renameLog)
- Explanation: Changes the current log file's name
Defaults (for module 'Mesquite')
- Open Windows as Tabs
- Use Wizard-style Dialogs
- Check for Notices on Mesquite Web Site
- Send Error Reports to Mesquite Server
- Use Log Window for Commands
- Log All Commands
- Previous Logs Saved... (for module 'Mesquite') (command: setNumPrevLog)
  - Explanation: Sets the number of previous logs saved
- Use "Other Choices" for Secondary Choices
- Secondary Choices Shown By Default in Dialog Boxes
- Show Subchoices in Module Dialogs
- Use Stored Characters/Matrices by Default
- Forget Default Web Browser (for module 'Mesquite') (command: forgetBrowser)
  - Explanation: Forgets the default web browser
- Color Theme (for module 'Mesquite') (command: setColorTheme)
  - Original
  - Dark Chocolate
  - Milk Chocolate
  - Slate
- Default Font (for module 'Mesquite') (command: setDefaultFont)
  - Dialog (command: setDefaultFont)
    - Explanation: Sets the default font of windows
  - SansSerif (command: setDefaultFont)
    - Explanation: Sets the default font of windows
  - Serif (command: setDefaultFont)
    - Explanation: Sets the default font of windows
  - Monospaced (command: setDefaultFont)
    - Explanation: Sets the default font of windows
  - DialogInput (command: setDefaultFont)
    - Explanation: Sets the default font of windows
- Default Font Size (for module 'Mesquite') (command: setDefaultFontSize)
  - 9 (command: setDefaultFontSize)
    - Explanation: Sets the default font size of windows
  - 10 (command: setDefaultFontSize)
    - Explanation: Sets the default font size of windows
  - 12 (command: setDefaultFontSize)
    - Explanation: Sets the default font size of windows
  - 14 (command: setDefaultFontSize)
    - Explanation: Sets the default font size of windows
  - 18 (command: setDefaultFontSize)
    - Explanation: Sets the default font size of windows
  - 24 (command: setDefaultFontSize)
    - Explanation: Sets the default font size of windows
  - 30 (command: setDefaultFontSize)
    - Explanation: Sets the default font size of windows
  - 36 (command: setDefaultFontSize)
    - Explanation: Sets the default font size of windows
  - Other... (command: setDefaultFontSize)
    - Explanation: Sets the default font size of windows
- Project Panel Font Size (for module 'Mesquite') (command: setProjectPanelFontSize)
  - 9 (command: setProjectPanelFontSize)
    - Explanation: Sets the font size of project panel
  - 10 (command: setProjectPanelFontSize)
    - Explanation: Sets the font size of project panel
  - 12 (command: setProjectPanelFontSize)
    - Explanation: Sets the font size of project panel
  - 14 (command: setProjectPanelFontSize)
    - Explanation: Sets the font size of project panel
  - 18 (command: setProjectPanelFontSize)
    - Explanation: Sets the font size of project panel
  - 24 (command: setProjectPanelFontSize)
    - Explanation: Sets the font size of project panel
  - 30 (command: setProjectPanelFontSize)
    - Explanation: Sets the font size of project panel
  - 36 (command: setProjectPanelFontSize)
    - Explanation: Sets the font size of project panel
  - Other... (command: setProjectPanelFontSize)
    - Explanation: Sets the font size of project panel
- Use File-Specific Project Panel Width
- Ask for Random Number Seeds
- Permit Partial Names in Tree Reading
- Matrix Limits for Undo... (for module 'Mesquite') (command: setMaxMatrixSizeUndo)
  - Explanation: Sets the maximum number of taxa and characters for whole-matrix undos to work in data editor
- Debug Mode
- Set Author... (for module 'Mesquite') (command: setAuthor)
  - Explanation: Sets the author for this account and machine
- Record Authors by Default
- Invent Unique IDs for New Taxa
- Invent Unique IDs for New Characters
- Automatic NEXUS backups... (for module 'Mesquite') (command: autobackup)
  - Explanation: Sets the number of previous backups
- Suppress TITLE in NEXUS files
- Tree Defaults (for module 'Mesquite')
  - Polytomies Hard by Default
  - Convert Internal Names to Notes
- Lock In Simple Mode
Check Now for Notices/Installs... (for module 'Mesquite') (command: checkNotices)
- Explanation: Checks for notices or installs at the location specified
Available to Install or Update (for module 'Mesquite')
- Opal v. 1.0 (for module 'Mesquite') (command: phoneHomeLinkTouched)
  - Explanation: phoneHomeLinkTouched
Reset Menus (for module 'Mesquite') (command: resetMenus)
- Explanation: Forces a reset of the menus.
Force Quit (for module 'Mesquite') (command: forceQuit)
- Explanation: Force Quit Mesquite (data may be lost)
Quit Mesquite (for module 'Mesquite') (command: quit)
- Explanation: Quits Mesquite

Edit

Undo (for module 'Mesquite') (command: undo)
- Explanation: Undoes the previous change in the window
Previous Tool (for module 'Mesquite') (command: setToPreviousTool)
- Explanation: Sets the tool to the previous tool.
Cut (for module 'Mesquite') (command: cut)
- Explanation: Copies current selection to clipboard and clears from selection
Copy (for module 'Mesquite') (command: copy)
- Explanation: Copies current selection to clipboard
Paste (for module 'Mesquite') (command: paste)
- Explanation: Pastes from clipboard into current selection
Clear (for module 'Mesquite') (command: clear)
- Explanation: Clears current selection
Select All (for module 'Mesquite') (command: selectAll)
- Explanation: Selects all
Font (for module 'Window Holder')
- Dialog
- SansSerif
- Serif
- Monospaced
- DialogInput
Font Size (for module 'Window Holder')
- 9
- 10
- 12
- 14
- 18
- 24
- 36

Window

Menu & Control Explanations (for module 'Window Holder') (command: showExplanations)
- Explanation: Composes and shows the menu and control explanations web page
Save Window as Macro... (for module 'Window Holder') (command: saveMacroForWindow)
- Explanation: Saves a macro that serves as a macro to reproduce an analysis or window
Scripting (for module 'Window Holder')
- Show Snapshot (for module 'Window Holder') (command: showSnapshot)
  - Explanation: Shows the commands needed to put window and its modules into their current states
- Send Script (for module 'Window Holder') (command: sendScript)
  - Explanation: Presents dialog through which user can send commands to the module in charge of the window
Bring All Windows To Front (for module 'Window Holder') (command: showAllWindows)
- Explanation: Brings all windows to front
Projects (for module 'Mesquite')
Current Windows
- Search (for module 'Mesquite') (command: showWindow)
  - Explanation: Makes the window visible
- Simplification (for module 'Mesquite') (command: showWindow)
  - Explanation: Makes the window visible
Mesquite Startup Window (for module 'Mesquite') (command: showWindow)
- Explanation: Makes the window visible
Log (for module 'Mesquite') (command: showWindow)
- Explanation: Makes the window visible
Projects and Files (for module 'Mesquite') (command: showWindow)
- Explanation: Makes the window visible
Display License (for module 'Mesquite') (command: showLicense)
- Explanation: Shows the GNU Lesser General Public License.

Help

Mesquite Manual (for module 'Mesquite') (command: showHomePage)
- Explanation: Shows home page of Mesquite manual
Support and Advice (for module 'Mesquite') (command: showSupport)
- Explanation: Shows Support page of Mesquite manual
Modules Loaded (for module 'Mesquite') (command: showModules)
- Explanation: Shows web page of installed and loaded modules
Keyword Search... (for module 'Mesquite') (command: keywordSearch)
- Explanation: Performs keyword search to find module with particular function.
Web Search... (for module 'Mesquite') (command: webSearch)
- Explanation: Searches the internet for user-provided terms.
Mesquite FAQs (for module 'Mesquite') (command: mesquiteFAQ)
- Explanation: Opens the Mesquite FAQ in a web browser
Scripting Commands (for module 'Mesquite') (command: showCommands)
- Explanation: Shows web page of available commands for scripting
Ancestral States Reconstruction Package (for module 'Mesquite') (command: showPackageInfo)
- Explanation: Shows web page introducing a package of installed modules
Genesis Package (for module 'Mesquite') (command: showPackageInfo)
- Explanation: Shows web page introducing a package of installed modules
Align Package (for module 'Mesquite') (command: showPackageInfo)
- Explanation: Shows web page introducing a package of installed modules
Batch Architect Package (for module 'Mesquite') (command: showPackageInfo)
- Explanation: Shows web page introducing a package of installed modules
Coalescence Package (for module 'Mesquite') (command: showPackageInfo)
- Explanation: Shows web page introducing a package of installed modules
Pairwise Comparisons Package (for module 'Mesquite') (command: showPackageInfo)
- Explanation: Shows web page introducing a package of installed modules
Rhetenor Package (for module 'Mesquite') (command: showPackageInfo)
- Explanation: Shows web page introducing a package of installed modules
iText (for module 'Mesquite') (command: showPackageInfo)
- Explanation: Shows web page introducing a package of installed modules
JAMA (for module 'Mesquite') (command: showPackageInfo)
- Explanation: Shows web page introducing a package of installed modules
JSci (for module 'Mesquite') (command: showPackageInfo)
- Explanation: Shows web page introducing a package of installed modules
PAL (Phylogenetic Analysis Library) (for module 'Mesquite') (command: showPackageInfo)
- Explanation: Shows web page introducing a package of installed modules
Active Module Tree (for module 'Mesquite') (command: showEmployeeTree)
List active modules (for module 'Mesquite') (command: dumpEmployeeTree)
- Explanation: Dumps the entire employee tree to the log
List prerelease modules (for module 'Mesquite') (command: dumpSubstantivePrerelease)
- Explanation: Dumps to the log a list of those modules that are substantive and (prerelease or without citations)
List all modules (for module 'Mesquite') (command: dumpAllModules)
- Explanation: Dumps to the log a list of all modules installed
List new modules (for module 'Mesquite') (command: dumpNewModules)
- Explanation: Dumps to the log a list of those modules that are new to this version
Show Developer Statistics (for module 'Mesquite') (command: showStatistics)
- Explanation: Shows some statistics that might be of interest to developers