TODO: EMAIL ADDRESS OBTAINED FROM BIRCH PROPERTIES Running GetBIRCH installer process Updating an existing BIRCH installation Updating BIRCH The selected directory /home/psgendb contains a BIRCH installation, it will be updated ********************Starting the install process******************** Installing BIRCH version 3.90 Using: /home/psgendb as installation directory ********************Fetching archives******************** Downloading BIRCH framework to /home/psgendb from http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/CURRENT/framework_3.90.tar.gz Fetching /home/psgendb/framework4659379541194895894.tar.gz from http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/CURRENT/framework_3.90.tar.gz size: 938180418 Downloading binaries for platform "linux-x86_64" to /home/psgendb from http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/CURRENT/bin-linux-x86_64_3.90.tar.gz Fetching /home/psgendb/linux-x86_645300564386556840668.tar.gz from http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/CURRENT/bin-linux-x86_64_3.90.tar.gz size: 895509583 Fetching /home/psgendb/UNINSTALL-birch7354594050870675640.py from http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/CURRENT/UNINSTALL-birch.py size: 7695 executing - /usr/libexec/platform-python3.6 /home/psgendb/UNINSTALL-birch7354594050870675640.py -Q -d=/home/psgendb Deleting admin Deleting dat Deleting doc Deleting java Deleting labace Deleting local-generic Deleting manl Deleting pkg Deleting python Deleting public_html Deleting script Deleting birchconfig.homedir.target.html Deleting bin-linux-x86_64 Deleting lib-linux-x86_64 Deleting install-scripts Command finished execution, return status: 0 Decompressing /home/psgendb/framework4659379541194895894.tar.gz... executing - gunzip /home/psgendb/framework4659379541194895894.tar.gz Command finished execution, return status: 0 executing - tar -xvpf /home/psgendb/framework4659379541194895894.tar 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install-scripts/setplatform.py.bak2 install-scripts/birch_install.py.bak8 install-scripts/birch_install.py.bak9 install-scripts/birchconfig.sh install-scripts/birchconfig4.jar install-scripts/birchhome.py install-scripts/birchhome.py.bak4 install-scripts/birchlib.pyc install-scripts/birchhome.py~ install-scripts/birchprops.sh install-scripts/createlauncher.pyc install-scripts/birchprops.sh~ install-scripts/blastdbkit.py~ install-scripts/getbirch.jar install-scripts/htmldir.param install-scripts/linklauncher.pyc install-scripts/minibirch.links install-scripts/newURLs.param install-scripts/oldURLs.param install-scripts/oldstr.param install-scripts/setplatform.py install-scripts/setplatform.py.bak install-scripts/test.py install-scripts/test.py.bak install-scripts/update_local.py install-scripts/update_local.py.bak install-scripts/vncsetup.pyc install-scripts/birch_install.py.bak10 java/ java/Jalview java/jalview-all-2.11.2.1-j1.8/ 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java/BioLegato-1.1.1/src/BioPCD/ java/BioLegato-1.1.1/src/BioPCD/.DS_Store java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/ java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/.DS_Store java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/.cvsignore java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/bin/ java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/bin/gde2pcd.jar java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/build.old java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/build.xml java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/docs/ java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/docs/allclasses-frame.html java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/docs/allclasses-noframe.html java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/docs/constant-values.html java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/docs/deprecated-list.html java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/docs/help-doc.html java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/docs/index-all.html java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/docs/index.html java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/docs/org/ java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/docs/org/biolegato/ java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/docs/org/biolegato/gde2pcd/ java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/docs/org/biolegato/gde2pcd/GDE2PCD.html java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/docs/org/biolegato/gde2pcd/GDEMakeMenus.html java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/docs/org/biolegato/gde2pcd/GDEMenu.html java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/docs/org/biolegato/gde2pcd/GDEMenuParser.html java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/docs/org/biolegato/gde2pcd/class-use/ java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/docs/org/biolegato/gde2pcd/class-use/GDE2PCD.html java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/docs/org/biolegato/gde2pcd/class-use/GDEMakeMenus.html java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/docs/org/biolegato/gde2pcd/class-use/GDEMenu.html java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/docs/org/biolegato/gde2pcd/class-use/GDEMenuParser.html java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/docs/org/biolegato/gde2pcd/package-frame.html java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/docs/org/biolegato/gde2pcd/package-summary.html java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/docs/org/biolegato/gde2pcd/package-tree.html java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/docs/org/biolegato/gde2pcd/package-use.html java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/docs/overview-tree.html java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/docs/package-list java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/docs/script.js java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/docs/stylesheet.css java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/package.properties java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/src/ java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/src/org/ java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/src/org/biolegato/ java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/src/org/biolegato/gde2pcd/ java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/src/org/biolegato/gde2pcd/GDE2PCD.java java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/src/org/biolegato/gde2pcd/GDEMakeMenus.java java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/src/org/biolegato/gde2pcd/GDEMenu.java java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/src/org/biolegato/gde2pcd/GDEMenuParser.java java/BioLegato-1.1.1/src/BioPCD/GDE2PCD/src/usage.txt java/BioLegato-1.1.1/src/BioPCD/bin/ java/BioLegato-1.1.1/src/BioPCD/bin/biopcd.jar java/BioLegato-1.1.1/src/BioPCD/bin/gde2pcd.jar java/BioLegato-1.1.1/src/BioPCD/build.xml java/BioLegato-1.1.1/src/BioPCD/docs/ java/BioLegato-1.1.1/src/BioPCD/docs/GDE2PCD/ java/BioLegato-1.1.1/src/BioPCD/docs/GDE2PCD/allclasses-frame.html java/BioLegato-1.1.1/src/BioPCD/docs/GDE2PCD/allclasses-noframe.html java/BioLegato-1.1.1/src/BioPCD/docs/GDE2PCD/constant-values.html java/BioLegato-1.1.1/src/BioPCD/docs/GDE2PCD/deprecated-list.html java/BioLegato-1.1.1/src/BioPCD/docs/GDE2PCD/help-doc.html java/BioLegato-1.1.1/src/BioPCD/docs/GDE2PCD/index-all.html java/BioLegato-1.1.1/src/BioPCD/docs/GDE2PCD/index.html java/BioLegato-1.1.1/src/BioPCD/docs/GDE2PCD/org/ 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java/BioLegato-1.1.1/src/BioPCD/docs/GDE2PCD/org/biolegato/gde2pcd/package-summary.html java/BioLegato-1.1.1/src/BioPCD/docs/GDE2PCD/org/biolegato/gde2pcd/package-tree.html java/BioLegato-1.1.1/src/BioPCD/docs/GDE2PCD/org/biolegato/gde2pcd/package-use.html java/BioLegato-1.1.1/src/BioPCD/docs/GDE2PCD/overview-tree.html java/BioLegato-1.1.1/src/BioPCD/docs/GDE2PCD/package-list java/BioLegato-1.1.1/src/BioPCD/docs/GDE2PCD/script.js java/BioLegato-1.1.1/src/BioPCD/docs/GDE2PCD/stylesheet.css java/BioLegato-1.1.1/src/BioPCD/docs/parser/ java/BioLegato-1.1.1/src/BioPCD/docs/parser/allclasses-frame.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/allclasses-noframe.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/constant-values.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/deprecated-list.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/help-doc.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/index-all.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/index.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/ java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/ java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/ java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/ASTAct.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/ASTArchList.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/ASTArchName.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/ASTBody.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/ASTBool.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/ASTContent.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/ASTDecimal.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/ASTFileFormat.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/ASTFullSQLQuery.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/ASTIdent.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/ASTNumber.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/ASTPanel.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/ASTParam.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/ASTParseDBConnect.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/ASTSystemName.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/ASTTab.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/ASTText.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/ASTbuttonFields.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/ASTdecimalFields.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/ASTdirFields.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/ASTfileFields.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/ASTlistFields.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/ASTnumberFields.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/ASTparseFullMenu.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/ASTparseMenuItem.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/ASTtempfileFields.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/ASTtextAreaFields.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/ASTtextFields.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/CommandThread.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/JJTPCDState.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/Node.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/PCD.ARCH.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/PCD.ListType.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/PCD.OS.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/PCD.PCDMetaTokenManager.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/PCD.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/PCDConstants.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/PCDIO.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/PCDObject.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/PCDTokenManager.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/PCDTreeConstants.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/PCDVisitor.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/ParseException.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/PreProcess.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/RunWindow.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/SimpleCharStream.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/SimpleNode.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/StreamCopier.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/SystemToken.ARCH.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/SystemToken.OS.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/SystemToken.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/Token.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/TokenMgrError.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/class-use/ java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/class-use/ASTAct.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/class-use/ASTArchList.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/class-use/ASTArchName.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/class-use/ASTBody.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/class-use/ASTBool.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/class-use/ASTContent.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/class-use/ASTDecimal.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/class-use/ASTFileFormat.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/class-use/ASTFullSQLQuery.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/class-use/ASTIdent.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/class-use/ASTNumber.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/class-use/ASTPanel.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/class-use/ASTParam.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/class-use/ASTParseDBConnect.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/class-use/ASTSystemName.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/class-use/ASTTab.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/class-use/ASTText.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/class-use/ASTbuttonFields.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/class-use/ASTdecimalFields.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/class-use/ASTdirFields.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/class-use/ASTfileFields.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/class-use/ASTlistFields.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/class-use/ASTnumberFields.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/class-use/ASTparseFullMenu.html java/BioLegato-1.1.1/src/BioPCD/docs/parser/org/biopcd/parser/class-use/ASTparseMenuItem.html 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java/BioLegato-1.1.1/src/BioPCD/parser/docs/org/biopcd/widgets/TabbedWidget.html java/BioLegato-1.1.1/src/BioPCD/parser/docs/org/biopcd/widgets/TempFile.html java/BioLegato-1.1.1/src/BioPCD/parser/docs/org/biopcd/widgets/TextAreaWidget.html java/BioLegato-1.1.1/src/BioPCD/parser/docs/org/biopcd/widgets/TextWidget.html java/BioLegato-1.1.1/src/BioPCD/parser/docs/org/biopcd/widgets/Widget.html java/BioLegato-1.1.1/src/BioPCD/parser/docs/org/biopcd/widgets/WidgetGenerator.html java/BioLegato-1.1.1/src/BioPCD/parser/docs/org/biopcd/widgets/WidgetInstance.html java/BioLegato-1.1.1/src/BioPCD/parser/docs/org/biopcd/widgets/WidgetTransferHandler.html java/BioLegato-1.1.1/src/BioPCD/parser/docs/org/biopcd/widgets/class-use/ java/BioLegato-1.1.1/src/BioPCD/parser/docs/org/biopcd/widgets/class-use/AbstractFileChooser.html java/BioLegato-1.1.1/src/BioPCD/parser/docs/org/biopcd/widgets/class-use/ChoiceList.html java/BioLegato-1.1.1/src/BioPCD/parser/docs/org/biopcd/widgets/class-use/Chooser.html java/BioLegato-1.1.1/src/BioPCD/parser/docs/org/biopcd/widgets/class-use/CloseableWindow.html java/BioLegato-1.1.1/src/BioPCD/parser/docs/org/biopcd/widgets/class-use/ComboBoxWidget.html java/BioLegato-1.1.1/src/BioPCD/parser/docs/org/biopcd/widgets/class-use/CommandButton.html java/BioLegato-1.1.1/src/BioPCD/parser/docs/org/biopcd/widgets/class-use/DirectoryChooser.html java/BioLegato-1.1.1/src/BioPCD/parser/docs/org/biopcd/widgets/class-use/FileChooser.html java/BioLegato-1.1.1/src/BioPCD/parser/docs/org/biopcd/widgets/class-use/ListWidget.html java/BioLegato-1.1.1/src/BioPCD/parser/docs/org/biopcd/widgets/class-use/NumberWidget.html java/BioLegato-1.1.1/src/BioPCD/parser/docs/org/biopcd/widgets/class-use/PanelWidget.html java/BioLegato-1.1.1/src/BioPCD/parser/docs/org/biopcd/widgets/class-use/SimpleWidget.html java/BioLegato-1.1.1/src/BioPCD/parser/docs/org/biopcd/widgets/class-use/TabbedWidget.html 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java/BioLegato-1.1.1/src/BioPCD/parser/docs/overview-frame.html java/BioLegato-1.1.1/src/BioPCD/parser/docs/overview-summary.html java/BioLegato-1.1.1/src/BioPCD/parser/docs/overview-tree.html java/BioLegato-1.1.1/src/BioPCD/parser/docs/package-list java/BioLegato-1.1.1/src/BioPCD/parser/docs/script.js java/BioLegato-1.1.1/src/BioPCD/parser/docs/serialized-form.html java/BioLegato-1.1.1/src/BioPCD/parser/docs/stylesheet.css java/BioLegato-1.1.1/src/BioPCD/parser/package.properties java/BioLegato-1.1.1/src/BioPCD/parser/src/ java/BioLegato-1.1.1/src/BioPCD/parser/src/org/ java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/ java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/icons/ java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/icons/checkbox.png java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/icons/choice_list.svg java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/icons/choicelist.png java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/icons/chooser.png java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/icons/combobox.png java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/icons/commandbutton.png java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/icons/dirchooser.png java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/icons/filechooser.png java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/icons/numberwidget.png java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/icons/panelwidget.png java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/icons/tabbedwidget.png java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/icons/tempfile.png java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/icons/textwidget.png java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/parser/ java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/parser/CommandThread.java java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/parser/CommandThread.java.v1.02 java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/parser/PCDIO.java java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/parser/PCDIO.java.1.0.4.bak1 java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/parser/PCDIO.java~ java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/parser/PCDMenuVisitor java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/parser/PCDMenuVisitor~ java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/parser/PCDObject.java java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/parser/PreProcess.java java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/parser/PreProcess.java.bak1 java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/parser/RunWindow.java java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/parser/StreamCopier.java java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/parser/SystemToken.java java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/parser/pcd.jj.v1.0.4.bak1 java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/parser/pcd.jj.v1.0.4.bak2 java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/parser/pcd.jjt java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/parser/pcd.jjt.1.0.5.1 java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/parser/pcd.jjt.bak1 java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/parser/pcd.jjt.old java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/parser/pcd.jjt~ java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/parser/pcd.jj~ java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/sql/ java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/sql/JDBCDBConnection.java java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/sql/PCDSQL.java java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/widgets/ java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/widgets/AbstractFileChooser.java java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/widgets/ChoiceList.java java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/widgets/Chooser.java java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/widgets/CloseableWindow.java java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/widgets/ComboBoxWidget.java java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/widgets/CommandButton.java java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/widgets/DirectoryChooser.java java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/widgets/FileChooser.java java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/widgets/ListWidget.java java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/widgets/NumberWidget.java java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/widgets/PanelWidget.java java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/widgets/SimpleWidget.java java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/widgets/TabbedWidget.java java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/widgets/TempFile.java java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/widgets/TempFile.java.1.0.4.bak2 java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/widgets/TempFile.java.bak1 java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/widgets/TempFile.java.bak2 java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/widgets/TempFile.java~ java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/widgets/TextAreaWidget.java java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/widgets/TextWidget.java java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/widgets/Widget.java java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/widgets/WidgetGenerator.java java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/widgets/WidgetInstance.java java/BioLegato-1.1.1/src/BioPCD/parser/src/org/biopcd/widgets/WidgetTransferHandler.java java/BioLegato-1.1.1/src/Canvases/ java/BioLegato-1.1.1/src/Canvases/.DS_Store java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/ java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/.DS_Store java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/.cvsignore java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/README.txt java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/bin/ java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/bin/biopcdedit.jar java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/build.old java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/build.xml java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/docs/ java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/docs/allclasses-frame.html java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/docs/allclasses-noframe.html java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/docs/constant-values.html java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/docs/deprecated-list.html java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/docs/help-doc.html java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/docs/index-all.html java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/docs/index.html java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/docs/org/ java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/docs/org/biopcd/ 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java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/docs/org/biopcd/editor/package-summary.html java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/docs/org/biopcd/editor/package-tree.html java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/docs/org/biopcd/editor/package-use.html java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/docs/overview-tree.html java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/docs/package-list java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/docs/script.js java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/docs/serialized-form.html java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/docs/stylesheet.css java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/package.properties java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/src/ java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/src/.DS_Store java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/src/org/ java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/src/org/.DS_Store java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/src/org/biopcd/ java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/src/org/biopcd/editor/ java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/src/org/biopcd/editor/.DS_Store java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/src/org/biopcd/editor/MenuCanvas.java java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/src/org/biopcd/editor/MenuWidgetsPanel.java java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/src/org/biopcd/editor/PCDEditor.java java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/src/org/biopcd/editor/PCDEditor.java.1.0.3.bak1 java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/src/org/biopcd/editor/PCDEditor.java~ java/BioLegato-1.1.1/src/Canvases/BioPCDEditor/src/org/biopcd/editor/PanelWidgetGenerator.java java/BioLegato-1.1.1/src/Canvases/Images/ java/BioLegato-1.1.1/src/Canvases/Images/.cvsignore java/BioLegato-1.1.1/src/Canvases/Images/bin/ java/BioLegato-1.1.1/src/Canvases/Images/bin/image.jar java/BioLegato-1.1.1/src/Canvases/Images/build.old java/BioLegato-1.1.1/src/Canvases/Images/build.xml java/BioLegato-1.1.1/src/Canvases/Images/docs/ java/BioLegato-1.1.1/src/Canvases/Images/docs/allclasses-frame.html java/BioLegato-1.1.1/src/Canvases/Images/docs/allclasses-noframe.html java/BioLegato-1.1.1/src/Canvases/Images/docs/constant-values.html java/BioLegato-1.1.1/src/Canvases/Images/docs/deprecated-list.html java/BioLegato-1.1.1/src/Canvases/Images/docs/help-doc.html java/BioLegato-1.1.1/src/Canvases/Images/docs/index-all.html java/BioLegato-1.1.1/src/Canvases/Images/docs/index.html java/BioLegato-1.1.1/src/Canvases/Images/docs/org/ java/BioLegato-1.1.1/src/Canvases/Images/docs/org/biolegato/ java/BioLegato-1.1.1/src/Canvases/Images/docs/org/biolegato/images/ java/BioLegato-1.1.1/src/Canvases/Images/docs/org/biolegato/images/ImageCanvas.html java/BioLegato-1.1.1/src/Canvases/Images/docs/org/biolegato/images/class-use/ java/BioLegato-1.1.1/src/Canvases/Images/docs/org/biolegato/images/class-use/ImageCanvas.html java/BioLegato-1.1.1/src/Canvases/Images/docs/org/biolegato/images/package-frame.html java/BioLegato-1.1.1/src/Canvases/Images/docs/org/biolegato/images/package-summary.html java/BioLegato-1.1.1/src/Canvases/Images/docs/org/biolegato/images/package-tree.html java/BioLegato-1.1.1/src/Canvases/Images/docs/org/biolegato/images/package-use.html java/BioLegato-1.1.1/src/Canvases/Images/docs/overview-tree.html java/BioLegato-1.1.1/src/Canvases/Images/docs/package-list java/BioLegato-1.1.1/src/Canvases/Images/docs/script.js java/BioLegato-1.1.1/src/Canvases/Images/docs/serialized-form.html java/BioLegato-1.1.1/src/Canvases/Images/docs/stylesheet.css java/BioLegato-1.1.1/src/Canvases/Images/package.properties java/BioLegato-1.1.1/src/Canvases/Images/src/ java/BioLegato-1.1.1/src/Canvases/Images/src/org/ java/BioLegato-1.1.1/src/Canvases/Images/src/org/biolegato/ java/BioLegato-1.1.1/src/Canvases/Images/src/org/biolegato/images/ java/BioLegato-1.1.1/src/Canvases/Images/src/org/biolegato/images/ImageCanvas.java java/BioLegato-1.1.1/src/Canvases/Images/src/org/biolegato/images/ImageCanvas.java.1.0.3.bak1 java/BioLegato-1.1.1/src/Canvases/Images/src/org/biolegato/images/ImageCanvas.java~ java/BioLegato-1.1.1/src/Canvases/Sequence/ java/BioLegato-1.1.1/src/Canvases/Sequence/.cvsignore java/BioLegato-1.1.1/src/Canvases/Sequence/bin/ java/BioLegato-1.1.1/src/Canvases/Sequence/bin/sequence.jar java/BioLegato-1.1.1/src/Canvases/Sequence/build.old java/BioLegato-1.1.1/src/Canvases/Sequence/build.xml java/BioLegato-1.1.1/src/Canvases/Sequence/docs/ java/BioLegato-1.1.1/src/Canvases/Sequence/docs/allclasses-frame.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/allclasses-noframe.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/constant-values.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/deprecated-list.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/help-doc.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/index-all.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/index.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/ java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/ java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/ java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/ java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/ColourMask.MaskType.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/ColourMask.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/SequenceCanvas.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/SequenceCanvasObject.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/SequenceCanvasProperties.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/SequenceList.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/SequenceTextArea.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/class-use/ java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/class-use/ColourMask.MaskType.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/class-use/ColourMask.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/class-use/SequenceCanvas.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/class-use/SequenceCanvasObject.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/class-use/SequenceCanvasProperties.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/class-use/SequenceList.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/class-use/SequenceTextArea.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/package-frame.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/package-summary.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/package-tree.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/package-use.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/data/ java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/data/DataFormat.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/data/Dataset.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/data/FastAFile.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/data/GDEFile.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/data/GDEFlatfile.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/data/GenBankFile2008.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/data/Seq.Direction.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/data/Seq.Strandedness.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/data/Seq.Topology.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/data/Seq.Type.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/data/Seq.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/data/SequenceWindow.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/data/class-use/ java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/data/class-use/DataFormat.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/data/class-use/Dataset.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/data/class-use/FastAFile.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/data/class-use/GDEFile.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/data/class-use/GDEFlatfile.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/data/class-use/GenBankFile2008.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/data/class-use/Seq.Direction.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/data/class-use/Seq.Strandedness.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/data/class-use/Seq.Topology.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/data/class-use/Seq.Type.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/data/class-use/Seq.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/data/class-use/SequenceWindow.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/data/package-frame.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/data/package-summary.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/data/package-tree.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/org/biolegato/sequence/data/package-use.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/overview-frame.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/overview-summary.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/overview-tree.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/package-list java/BioLegato-1.1.1/src/Canvases/Sequence/docs/script.js java/BioLegato-1.1.1/src/Canvases/Sequence/docs/serialized-form.html java/BioLegato-1.1.1/src/Canvases/Sequence/docs/stylesheet.css java/BioLegato-1.1.1/src/Canvases/Sequence/package.properties java/BioLegato-1.1.1/src/Canvases/Sequence/src/ java/BioLegato-1.1.1/src/Canvases/Sequence/src/org/ java/BioLegato-1.1.1/src/Canvases/Sequence/src/org/biolegato/ java/BioLegato-1.1.1/src/Canvases/Sequence/src/org/biolegato/sequence/ java/BioLegato-1.1.1/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/ java/BioLegato-1.1.1/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/ColourMask.java java/BioLegato-1.1.1/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/SequenceCanvas.java java/BioLegato-1.1.1/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/SequenceCanvas.java.bak1 java/BioLegato-1.1.1/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/SequenceCanvas.java~ java/BioLegato-1.1.1/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/SequenceCanvasObject.java java/BioLegato-1.1.1/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/SequenceCanvasProperties.java java/BioLegato-1.1.1/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/SequenceList.java java/BioLegato-1.1.1/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/SequenceTextArea.java java/BioLegato-1.1.1/src/Canvases/Sequence/src/org/biolegato/sequence/data/ java/BioLegato-1.1.1/src/Canvases/Sequence/src/org/biolegato/sequence/data/DataFormat.java java/BioLegato-1.1.1/src/Canvases/Sequence/src/org/biolegato/sequence/data/DataFormat.java~ java/BioLegato-1.1.1/src/Canvases/Sequence/src/org/biolegato/sequence/data/Dataset.java java/BioLegato-1.1.1/src/Canvases/Sequence/src/org/biolegato/sequence/data/Dataset.java~ java/BioLegato-1.1.1/src/Canvases/Sequence/src/org/biolegato/sequence/data/FastAFile.java java/BioLegato-1.1.1/src/Canvases/Sequence/src/org/biolegato/sequence/data/FastAFile.java~ java/BioLegato-1.1.1/src/Canvases/Sequence/src/org/biolegato/sequence/data/GDEFile.java java/BioLegato-1.1.1/src/Canvases/Sequence/src/org/biolegato/sequence/data/GDEFile.java~ java/BioLegato-1.1.1/src/Canvases/Sequence/src/org/biolegato/sequence/data/GDEFlatfile.java java/BioLegato-1.1.1/src/Canvases/Sequence/src/org/biolegato/sequence/data/GDEFlatfile.java~ java/BioLegato-1.1.1/src/Canvases/Sequence/src/org/biolegato/sequence/data/GenBankFile2008.java java/BioLegato-1.1.1/src/Canvases/Sequence/src/org/biolegato/sequence/data/GenBankFile2008.java~ java/BioLegato-1.1.1/src/Canvases/Sequence/src/org/biolegato/sequence/data/Seq.java java/BioLegato-1.1.1/src/Canvases/Sequence/src/org/biolegato/sequence/data/Seq.java~ java/BioLegato-1.1.1/src/Canvases/Sequence/src/org/biolegato/sequence/data/SequenceWindow.java java/BioLegato-1.1.1/src/Canvases/Sequence/src/org/biolegato/sequence/data/SequenceWindow.java~ java/BioLegato-1.1.1/src/Canvases/Tables/ java/BioLegato-1.1.1/src/Canvases/Tables/.cvsignore java/BioLegato-1.1.1/src/Canvases/Tables/bin/ java/BioLegato-1.1.1/src/Canvases/Tables/bin/table.jar java/BioLegato-1.1.1/src/Canvases/Tables/build.old java/BioLegato-1.1.1/src/Canvases/Tables/build.xml java/BioLegato-1.1.1/src/Canvases/Tables/docs/ java/BioLegato-1.1.1/src/Canvases/Tables/docs/allclasses-frame.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/allclasses-noframe.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/constant-values.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/deprecated-list.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/help-doc.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/index-all.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/index.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/ java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/ java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/ java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/CSVFile.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/CSVFileConstants.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/CSVFileTokenManager.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/ParseException.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/RowHeaderRenderer.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/SimpleCharStream.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/TSVFile.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/TSVFileConstants.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/TSVFileTokenManager.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/TableCanvas.SelectionMode.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/TableCanvas.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/TableCanvasProperties.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/Token.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/TokenMgrError.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/class-use/ java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/class-use/CSVFile.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/class-use/CSVFileConstants.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/class-use/CSVFileTokenManager.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/class-use/ParseException.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/class-use/RowHeaderRenderer.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/class-use/SimpleCharStream.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/class-use/TSVFile.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/class-use/TSVFileConstants.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/class-use/TSVFileTokenManager.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/class-use/TableCanvas.SelectionMode.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/class-use/TableCanvas.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/class-use/TableCanvasProperties.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/class-use/Token.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/class-use/TokenMgrError.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/package-frame.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/package-summary.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/package-tree.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/org/biolegato/tables/package-use.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/overview-tree.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/package-list java/BioLegato-1.1.1/src/Canvases/Tables/docs/script.js java/BioLegato-1.1.1/src/Canvases/Tables/docs/serialized-form.html java/BioLegato-1.1.1/src/Canvases/Tables/docs/stylesheet.css java/BioLegato-1.1.1/src/Canvases/Tables/package.properties java/BioLegato-1.1.1/src/Canvases/Tables/src/ java/BioLegato-1.1.1/src/Canvases/Tables/src/org/ java/BioLegato-1.1.1/src/Canvases/Tables/src/org/biolegato/ java/BioLegato-1.1.1/src/Canvases/Tables/src/org/biolegato/tables/ java/BioLegato-1.1.1/src/Canvases/Tables/src/org/biolegato/tables/CSVFile.jj java/BioLegato-1.1.1/src/Canvases/Tables/src/org/biolegato/tables/CSVFile.jj.1.0.3 java/BioLegato-1.1.1/src/Canvases/Tables/src/org/biolegato/tables/CSVFile.jj.1.0.4.bak1 java/BioLegato-1.1.1/src/Canvases/Tables/src/org/biolegato/tables/CSVFile.jj.1.0.4.bak2 java/BioLegato-1.1.1/src/Canvases/Tables/src/org/biolegato/tables/CSVFile.jj.1.0.4.bak3 java/BioLegato-1.1.1/src/Canvases/Tables/src/org/biolegato/tables/CSVFile.jj~ java/BioLegato-1.1.1/src/Canvases/Tables/src/org/biolegato/tables/RowHeaderRenderer.java java/BioLegato-1.1.1/src/Canvases/Tables/src/org/biolegato/tables/TSVFile.jj java/BioLegato-1.1.1/src/Canvases/Tables/src/org/biolegato/tables/TSVFile.jj.1.0.3 java/BioLegato-1.1.1/src/Canvases/Tables/src/org/biolegato/tables/TSVFile.jj.1.0.4.bak1 java/BioLegato-1.1.1/src/Canvases/Tables/src/org/biolegato/tables/TSVFile.jj.1.0.4.bak2 java/BioLegato-1.1.1/src/Canvases/Tables/src/org/biolegato/tables/TSVFile.jj~ java/BioLegato-1.1.1/src/Canvases/Tables/src/org/biolegato/tables/TableCanvas.java java/BioLegato-1.1.1/src/Canvases/Tables/src/org/biolegato/tables/TableCanvas.java.1.0.4.bak1 java/BioLegato-1.1.1/src/Canvases/Tables/src/org/biolegato/tables/TableCanvas.java.1.0.4.bak2 java/BioLegato-1.1.1/src/Canvases/Tables/src/org/biolegato/tables/TableCanvas.java.1.0.4.fix1 java/BioLegato-1.1.1/src/Canvases/Tables/src/org/biolegato/tables/TableCanvas.java.bak2 java/BioLegato-1.1.1/src/Canvases/Tables/src/org/biolegato/tables/TableCanvas.java~ java/BioLegato-1.1.1/src/Canvases/Tables/src/org/biolegato/tables/TableCanvasProperties.java java/BioLegato-1.1.1/src/Canvases/Tables/src/org/biolegato/tables/TableRowModel.java java/BioLegato-1.1.1/src/Canvases/bin/ java/BioLegato-1.1.1/src/Canvases/bin/biopcdedit.jar java/BioLegato-1.1.1/src/Canvases/bin/image.jar java/BioLegato-1.1.1/src/Canvases/bin/pcdcanvas.jar java/BioLegato-1.1.1/src/Canvases/bin/sequence.jar java/BioLegato-1.1.1/src/Canvases/bin/table.jar java/BioLegato-1.1.1/src/Canvases/biopcd/ java/BioLegato-1.1.1/src/Canvases/biopcd/bin/ java/BioLegato-1.1.1/src/Canvases/biopcd/bin/pcdcanvas.jar java/BioLegato-1.1.1/src/Canvases/biopcd/build.xml java/BioLegato-1.1.1/src/Canvases/biopcd/docs/ java/BioLegato-1.1.1/src/Canvases/biopcd/docs/allclasses-frame.html java/BioLegato-1.1.1/src/Canvases/biopcd/docs/allclasses-noframe.html java/BioLegato-1.1.1/src/Canvases/biopcd/docs/constant-values.html java/BioLegato-1.1.1/src/Canvases/biopcd/docs/deprecated-list.html java/BioLegato-1.1.1/src/Canvases/biopcd/docs/help-doc.html java/BioLegato-1.1.1/src/Canvases/biopcd/docs/index-all.html java/BioLegato-1.1.1/src/Canvases/biopcd/docs/index.html java/BioLegato-1.1.1/src/Canvases/biopcd/docs/org/ java/BioLegato-1.1.1/src/Canvases/biopcd/docs/org/biopcd/ java/BioLegato-1.1.1/src/Canvases/biopcd/docs/org/biopcd/canvas/ java/BioLegato-1.1.1/src/Canvases/biopcd/docs/org/biopcd/canvas/PCDCanvas.html java/BioLegato-1.1.1/src/Canvases/biopcd/docs/org/biopcd/canvas/ParseException.html java/BioLegato-1.1.1/src/Canvases/biopcd/docs/org/biopcd/canvas/SimpleCharStream.html java/BioLegato-1.1.1/src/Canvases/biopcd/docs/org/biopcd/canvas/Token.html java/BioLegato-1.1.1/src/Canvases/biopcd/docs/org/biopcd/canvas/TokenMgrError.html java/BioLegato-1.1.1/src/Canvases/biopcd/docs/org/biopcd/canvas/ValuesFile.html java/BioLegato-1.1.1/src/Canvases/biopcd/docs/org/biopcd/canvas/ValuesFileConstants.html java/BioLegato-1.1.1/src/Canvases/biopcd/docs/org/biopcd/canvas/ValuesFileTokenManager.html java/BioLegato-1.1.1/src/Canvases/biopcd/docs/org/biopcd/canvas/class-use/ java/BioLegato-1.1.1/src/Canvases/biopcd/docs/org/biopcd/canvas/class-use/PCDCanvas.html java/BioLegato-1.1.1/src/Canvases/biopcd/docs/org/biopcd/canvas/class-use/ParseException.html java/BioLegato-1.1.1/src/Canvases/biopcd/docs/org/biopcd/canvas/class-use/SimpleCharStream.html java/BioLegato-1.1.1/src/Canvases/biopcd/docs/org/biopcd/canvas/class-use/Token.html java/BioLegato-1.1.1/src/Canvases/biopcd/docs/org/biopcd/canvas/class-use/TokenMgrError.html java/BioLegato-1.1.1/src/Canvases/biopcd/docs/org/biopcd/canvas/class-use/ValuesFile.html java/BioLegato-1.1.1/src/Canvases/biopcd/docs/org/biopcd/canvas/class-use/ValuesFileConstants.html java/BioLegato-1.1.1/src/Canvases/biopcd/docs/org/biopcd/canvas/class-use/ValuesFileTokenManager.html java/BioLegato-1.1.1/src/Canvases/biopcd/docs/org/biopcd/canvas/package-frame.html java/BioLegato-1.1.1/src/Canvases/biopcd/docs/org/biopcd/canvas/package-summary.html java/BioLegato-1.1.1/src/Canvases/biopcd/docs/org/biopcd/canvas/package-tree.html java/BioLegato-1.1.1/src/Canvases/biopcd/docs/org/biopcd/canvas/package-use.html java/BioLegato-1.1.1/src/Canvases/biopcd/docs/overview-tree.html java/BioLegato-1.1.1/src/Canvases/biopcd/docs/package-list java/BioLegato-1.1.1/src/Canvases/biopcd/docs/script.js java/BioLegato-1.1.1/src/Canvases/biopcd/docs/serialized-form.html java/BioLegato-1.1.1/src/Canvases/biopcd/docs/stylesheet.css java/BioLegato-1.1.1/src/Canvases/biopcd/package.properties java/BioLegato-1.1.1/src/Canvases/biopcd/src/ java/BioLegato-1.1.1/src/Canvases/biopcd/src/org/ java/BioLegato-1.1.1/src/Canvases/biopcd/src/org/biopcd/ java/BioLegato-1.1.1/src/Canvases/biopcd/src/org/biopcd/canvas/ java/BioLegato-1.1.1/src/Canvases/biopcd/src/org/biopcd/canvas/PCDCanvas.java java/BioLegato-1.1.1/src/Canvases/biopcd/src/org/biopcd/canvas/PCDCanvas.java.1.0.3.bak1 java/BioLegato-1.1.1/src/Canvases/biopcd/src/org/biopcd/canvas/PCDCanvas.java~ java/BioLegato-1.1.1/src/Canvases/biopcd/src/org/biopcd/canvas/ValuesFile.jj java/BioLegato-1.1.1/src/Canvases/build.xml java/BioLegato-1.1.1/src/Canvases/dbpcd/ java/BioLegato-1.1.1/src/Canvases/dbpcd/bin/ java/BioLegato-1.1.1/src/Canvases/dbpcd/bin/dbcanvas.jar java/BioLegato-1.1.1/src/Canvases/dbpcd/bin/hsqldb.jar java/BioLegato-1.1.1/src/Canvases/dbpcd/build.xml java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/ java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/allclasses-frame.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/allclasses-noframe.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/constant-values.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/deprecated-list.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/help-doc.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/index-all.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/index.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/ java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/ java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/ java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/DBCanvas.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/DBPCD.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/DBPCDConstants.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/DBPCDTokenManager.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/DBSchema.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/EntriesListModel.Entry.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/EntriesListModel.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/JDBCDBConnection.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/PCDSQL.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/ParseException.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/SchemaListModel.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/SimpleCharStream.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/Token.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/TokenMgrError.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/ValuesFile.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/ValuesFileConstants.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/ValuesFileTokenManager.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/ java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/DBCanvas.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/DBPCD.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/DBPCDConstants.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/DBPCDTokenManager.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/DBSchema.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/EntriesListModel.Entry.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/EntriesListModel.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/JDBCDBConnection.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/PCDSQL.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/ParseException.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/SchemaListModel.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/SimpleCharStream.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/Token.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/TokenMgrError.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/ValuesFile.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/ValuesFileConstants.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/ValuesFileTokenManager.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/fields/ java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/fields/BooleanField.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/fields/DBCommand.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/fields/DBCommandThread.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/fields/DBField.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/fields/DBTextField.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/fields/DecimalField.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/fields/KeyableField.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/fields/NumberField.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/fields/ReferenceField.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/ java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/BooleanField.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/DBCommand.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/DBCommandThread.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/DBField.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/DBTextField.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/DecimalField.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/KeyableField.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/NumberField.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/ReferenceField.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/fields/package-frame.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/fields/package-summary.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/fields/package-tree.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/fields/package-use.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/package-frame.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/package-summary.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/package-tree.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/package-use.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/ java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/FieldGenerator.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/FieldTransferHandler.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/SchemaFieldsPanel.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/class-use/ java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/class-use/FieldGenerator.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/class-use/FieldTransferHandler.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/class-use/SchemaFieldsPanel.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/package-frame.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/package-summary.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/package-tree.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/package-use.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/overview-frame.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/overview-summary.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/overview-tree.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/package-list java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/resources/ java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/resources/background.gif java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/resources/tab.gif java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/resources/titlebar.gif java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/resources/titlebar_end.gif java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/serialized-form.html java/BioLegato-1.1.1/src/Canvases/dbpcd/docs/stylesheet.css java/BioLegato-1.1.1/src/Canvases/dbpcd/lib/ java/BioLegato-1.1.1/src/Canvases/dbpcd/lib/hsqldb.jar java/BioLegato-1.1.1/src/Canvases/dbpcd/package.properties java/BioLegato-1.1.1/src/Canvases/dbpcd/src/ java/BioLegato-1.1.1/src/Canvases/dbpcd/src/org/ java/BioLegato-1.1.1/src/Canvases/dbpcd/src/org/biolegato/ java/BioLegato-1.1.1/src/Canvases/dbpcd/src/org/biolegato/database/ java/BioLegato-1.1.1/src/Canvases/dbpcd/src/org/biolegato/database/DBCanvas.java java/BioLegato-1.1.1/src/Canvases/dbpcd/src/org/biolegato/database/DBSchema.java java/BioLegato-1.1.1/src/Canvases/dbpcd/src/org/biolegato/database/EntriesListModel.java java/BioLegato-1.1.1/src/Canvases/dbpcd/src/org/biolegato/database/JDBCDBConnection.java java/BioLegato-1.1.1/src/Canvases/dbpcd/src/org/biolegato/database/PCDSQL.java java/BioLegato-1.1.1/src/Canvases/dbpcd/src/org/biolegato/database/SchemaListModel.java java/BioLegato-1.1.1/src/Canvases/dbpcd/src/org/biolegato/database/ValuesFile.jj java/BioLegato-1.1.1/src/Canvases/dbpcd/src/org/biolegato/database/dbpcd.jj java/BioLegato-1.1.1/src/Canvases/dbpcd/src/org/biolegato/database/fields/ java/BioLegato-1.1.1/src/Canvases/dbpcd/src/org/biolegato/database/fields/BooleanField.java java/BioLegato-1.1.1/src/Canvases/dbpcd/src/org/biolegato/database/fields/DBCommand.java java/BioLegato-1.1.1/src/Canvases/dbpcd/src/org/biolegato/database/fields/DBCommandThread.java java/BioLegato-1.1.1/src/Canvases/dbpcd/src/org/biolegato/database/fields/DBField.java java/BioLegato-1.1.1/src/Canvases/dbpcd/src/org/biolegato/database/fields/DBTextField.java java/BioLegato-1.1.1/src/Canvases/dbpcd/src/org/biolegato/database/fields/DecimalField.java java/BioLegato-1.1.1/src/Canvases/dbpcd/src/org/biolegato/database/fields/KeyableField.java java/BioLegato-1.1.1/src/Canvases/dbpcd/src/org/biolegato/database/fields/NumberField.java java/BioLegato-1.1.1/src/Canvases/dbpcd/src/org/biolegato/database/fields/ReferenceField.java java/BioLegato-1.1.1/src/Canvases/dbpcd/src/org/biolegato/database/schemaeditor/ java/BioLegato-1.1.1/src/Canvases/dbpcd/src/org/biolegato/database/schemaeditor/FieldGenerator.java java/BioLegato-1.1.1/src/Canvases/dbpcd/src/org/biolegato/database/schemaeditor/FieldTransferHandler.java java/BioLegato-1.1.1/src/Canvases/dbpcd/src/org/biolegato/database/schemaeditor/SchemaFieldsPanel.java java/BioLegato-1.1.1/src/Canvases/docs/ java/BioLegato-1.1.1/src/Canvases/docs/BioPCDEditor/ java/BioLegato-1.1.1/src/Canvases/docs/BioPCDEditor/allclasses-frame.html java/BioLegato-1.1.1/src/Canvases/docs/BioPCDEditor/allclasses-noframe.html java/BioLegato-1.1.1/src/Canvases/docs/BioPCDEditor/constant-values.html java/BioLegato-1.1.1/src/Canvases/docs/BioPCDEditor/deprecated-list.html java/BioLegato-1.1.1/src/Canvases/docs/BioPCDEditor/help-doc.html java/BioLegato-1.1.1/src/Canvases/docs/BioPCDEditor/index-all.html java/BioLegato-1.1.1/src/Canvases/docs/BioPCDEditor/index.html java/BioLegato-1.1.1/src/Canvases/docs/BioPCDEditor/org/ java/BioLegato-1.1.1/src/Canvases/docs/BioPCDEditor/org/biopcd/ java/BioLegato-1.1.1/src/Canvases/docs/BioPCDEditor/org/biopcd/editor/ java/BioLegato-1.1.1/src/Canvases/docs/BioPCDEditor/org/biopcd/editor/MenuCanvas.html java/BioLegato-1.1.1/src/Canvases/docs/BioPCDEditor/org/biopcd/editor/MenuWidgetsPanel.html java/BioLegato-1.1.1/src/Canvases/docs/BioPCDEditor/org/biopcd/editor/PCDEditor.html java/BioLegato-1.1.1/src/Canvases/docs/BioPCDEditor/org/biopcd/editor/PanelWidgetGenerator.html java/BioLegato-1.1.1/src/Canvases/docs/BioPCDEditor/org/biopcd/editor/class-use/ java/BioLegato-1.1.1/src/Canvases/docs/BioPCDEditor/org/biopcd/editor/class-use/MenuCanvas.html java/BioLegato-1.1.1/src/Canvases/docs/BioPCDEditor/org/biopcd/editor/class-use/MenuWidgetsPanel.html java/BioLegato-1.1.1/src/Canvases/docs/BioPCDEditor/org/biopcd/editor/class-use/PCDEditor.html java/BioLegato-1.1.1/src/Canvases/docs/BioPCDEditor/org/biopcd/editor/class-use/PanelWidgetGenerator.html java/BioLegato-1.1.1/src/Canvases/docs/BioPCDEditor/org/biopcd/editor/package-frame.html java/BioLegato-1.1.1/src/Canvases/docs/BioPCDEditor/org/biopcd/editor/package-summary.html java/BioLegato-1.1.1/src/Canvases/docs/BioPCDEditor/org/biopcd/editor/package-tree.html java/BioLegato-1.1.1/src/Canvases/docs/BioPCDEditor/org/biopcd/editor/package-use.html java/BioLegato-1.1.1/src/Canvases/docs/BioPCDEditor/overview-tree.html java/BioLegato-1.1.1/src/Canvases/docs/BioPCDEditor/package-list java/BioLegato-1.1.1/src/Canvases/docs/BioPCDEditor/script.js java/BioLegato-1.1.1/src/Canvases/docs/BioPCDEditor/serialized-form.html java/BioLegato-1.1.1/src/Canvases/docs/BioPCDEditor/stylesheet.css java/BioLegato-1.1.1/src/Canvases/docs/Images/ java/BioLegato-1.1.1/src/Canvases/docs/Images/allclasses-frame.html java/BioLegato-1.1.1/src/Canvases/docs/Images/allclasses-noframe.html java/BioLegato-1.1.1/src/Canvases/docs/Images/constant-values.html java/BioLegato-1.1.1/src/Canvases/docs/Images/deprecated-list.html java/BioLegato-1.1.1/src/Canvases/docs/Images/help-doc.html java/BioLegato-1.1.1/src/Canvases/docs/Images/index-all.html 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java/BioLegato-1.1.1/src/Core/docs/org/biolegato/main/class-use/PluginLoader.html java/BioLegato-1.1.1/src/Core/docs/org/biolegato/main/class-use/PluginWrapper.html java/BioLegato-1.1.1/src/Core/docs/org/biolegato/main/class-use/StreamCopier.html java/BioLegato-1.1.1/src/Core/docs/org/biolegato/main/package-frame.html java/BioLegato-1.1.1/src/Core/docs/org/biolegato/main/package-summary.html java/BioLegato-1.1.1/src/Core/docs/org/biolegato/main/package-tree.html java/BioLegato-1.1.1/src/Core/docs/org/biolegato/main/package-use.html java/BioLegato-1.1.1/src/Core/docs/overview-tree.html java/BioLegato-1.1.1/src/Core/docs/package-list java/BioLegato-1.1.1/src/Core/docs/script.js java/BioLegato-1.1.1/src/Core/docs/serialized-form.html java/BioLegato-1.1.1/src/Core/docs/stylesheet.css java/BioLegato-1.1.1/src/Core/package.properties java/BioLegato-1.1.1/src/Core/pcd.xml java/BioLegato-1.1.1/src/Core/src/ java/BioLegato-1.1.1/src/Core/src/.DS_Store java/BioLegato-1.1.1/src/Core/src/default.properties java/BioLegato-1.1.1/src/Core/src/manpage.txt java/BioLegato-1.1.1/src/Core/src/optionlist.txt java/BioLegato-1.1.1/src/Core/src/org/ java/BioLegato-1.1.1/src/Core/src/org/.DS_Store java/BioLegato-1.1.1/src/Core/src/org/biolegato/ java/BioLegato-1.1.1/src/Core/src/org/biolegato/.DS_Store java/BioLegato-1.1.1/src/Core/src/org/biolegato/main/ java/BioLegato-1.1.1/src/Core/src/org/biolegato/main/BLMain.java java/BioLegato-1.1.1/src/Core/src/org/biolegato/main/BLMain.java.1.0.5.1.bak1 java/BioLegato-1.1.1/src/Core/src/org/biolegato/main/DataCanvas.java java/BioLegato-1.1.1/src/Core/src/org/biolegato/main/PluginLoader.java java/BioLegato-1.1.1/src/Core/src/org/biolegato/main/PluginWrapper.java java/BioLegato-1.1.1/src/Core/src/org/biolegato/main/StreamCopier.java java/BioLegato-1.1.1/src/README.txt java/BioLegato-1.1.1/src/Turtle/ java/BioLegato-1.1.1/src/Turtle/bin/ java/BioLegato-1.1.1/src/Turtle/bin/turtle.jar java/BioLegato-1.1.1/src/Turtle/build.old java/BioLegato-1.1.1/src/Turtle/build.xml java/BioLegato-1.1.1/src/Turtle/lib/ java/BioLegato-1.1.1/src/Turtle/lib/ant-contrib.jar java/BioLegato-1.1.1/src/Turtle/lib/ant-junit.jar java/BioLegato-1.1.1/src/Turtle/lib/javacc.jar java/BioLegato-1.1.1/src/Turtle/lib/junit-3.8.1.jar java/BioLegato-1.1.1/src/Turtle/lib/junit-4.9.jar java/BioLegato-1.1.1/src/Turtle/lib/junit.jar java/BioLegato-1.1.1/src/Turtle/lib/makeman.sh java/BioLegato-1.1.1/src/Turtle/package.properties java/BioLegato-1.1.1/src/Turtle/selfbuild.xml java/BioLegato-1.1.1/src/Turtle/src/ java/BioLegato-1.1.1/src/Turtle/src/manpages/ java/BioLegato-1.1.1/src/Turtle/src/manpages/CAT.man java/BioLegato-1.1.1/src/Turtle/src/manpages/CD.man java/BioLegato-1.1.1/src/Turtle/src/manpages/COMMANDS.man java/BioLegato-1.1.1/src/Turtle/src/manpages/CP.man java/BioLegato-1.1.1/src/Turtle/src/manpages/CUT.man java/BioLegato-1.1.1/src/Turtle/src/manpages/DATE.man java/BioLegato-1.1.1/src/Turtle/src/manpages/ECHO.man java/BioLegato-1.1.1/src/Turtle/src/manpages/EXPR.man java/BioLegato-1.1.1/src/Turtle/src/manpages/FGREP.man java/BioLegato-1.1.1/src/Turtle/src/manpages/GREP.man java/BioLegato-1.1.1/src/Turtle/src/manpages/HEAD.man java/BioLegato-1.1.1/src/Turtle/src/manpages/MAN.man java/BioLegato-1.1.1/src/Turtle/src/manpages/MKDIRS.man java/BioLegato-1.1.1/src/Turtle/src/manpages/MV.man java/BioLegato-1.1.1/src/Turtle/src/manpages/PASTE.man java/BioLegato-1.1.1/src/Turtle/src/manpages/PWD.man java/BioLegato-1.1.1/src/Turtle/src/manpages/REV.man java/BioLegato-1.1.1/src/Turtle/src/manpages/RM.man java/BioLegato-1.1.1/src/Turtle/src/manpages/RSORT.man java/BioLegato-1.1.1/src/Turtle/src/manpages/SORT.man java/BioLegato-1.1.1/src/Turtle/src/manpages/SYNTAX.man java/BioLegato-1.1.1/src/Turtle/src/manpages/TAIL.man java/BioLegato-1.1.1/src/Turtle/src/manpages/TR.man java/BioLegato-1.1.1/src/Turtle/src/manpages/UNIQ.man java/BioLegato-1.1.1/src/Turtle/src/manpages/WC.man java/BioLegato-1.1.1/src/Turtle/src/org/ java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/ java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/StreamCopier.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/TEnv.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/TurtleFileWriter.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/cmd/ java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/cmd/.cvsignore java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/cmd/.man java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/cmd/CAT.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/cmd/CD.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/cmd/CP.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/cmd/CUT.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/cmd/DATE.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/cmd/ECHO.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/cmd/EXPR.jj java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/cmd/FGREP.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/cmd/GREP.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/cmd/HEAD.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/cmd/MAN.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/cmd/MKDIRS.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/cmd/MV.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/cmd/PASTE.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/cmd/PWD.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/cmd/REV.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/cmd/RM.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/cmd/RSORT.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/cmd/SED.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/cmd/SED.man java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/cmd/SORT.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/cmd/TAC.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/cmd/TAIL.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/cmd/TEST.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/cmd/TR.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/cmd/UNIQ.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/cmd/WC.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/strings/ java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/strings/DoubleExecString.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/strings/ShellString.jj java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/strings/TString.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/tasks/ java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/tasks/AndTask.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/tasks/Command.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/tasks/DualTask.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/tasks/IfTask.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/tasks/LogicTask.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/tasks/OrTask.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/tasks/SequentialTask.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/tasks/TTask.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/tasks/WhileTask.java java/BioLegato-1.1.1/src/Turtle/src/org/turtleshell/turtle.jj java/BioLegato-1.1.1/src/ants.properties java/BioLegato-1.1.1/src/applet_work/ java/BioLegato-1.1.1/src/applet_work/image.html java/BioLegato-1.1.1/src/applet_work/list.html java/BioLegato-1.1.1/src/applet_work/pcdcanvas.html java/BioLegato-1.1.1/src/applet_work/sequence.html java/BioLegato-1.1.1/src/applet_work/sequence.jnlp java/BioLegato-1.1.1/src/applet_work/table.html java/BioLegato-1.1.1/src/bin/ java/BioLegato-1.1.1/src/bin/biolegato.jar java/BioLegato-1.1.1/src/bin/biopcd.jar java/BioLegato-1.1.1/src/bin/biopcdedit.jar java/BioLegato-1.1.1/src/bin/gde2pcd.jar java/BioLegato-1.1.1/src/bin/image.jar java/BioLegato-1.1.1/src/bin/pcdcanvas.jar java/BioLegato-1.1.1/src/bin/sequence.jar java/BioLegato-1.1.1/src/bin/table.jar java/BioLegato-1.1.1/src/biolegato java/BioLegato-1.1.1/src/build.old java/BioLegato-1.1.1/src/build.xml java/BioLegato-1.1.1/src/docs/ java/BioLegato-1.1.1/src/docs/BioPCD/ java/BioLegato-1.1.1/src/docs/BioPCD/GDE2PCD/ java/BioLegato-1.1.1/src/docs/BioPCD/GDE2PCD/allclasses-frame.html java/BioLegato-1.1.1/src/docs/BioPCD/GDE2PCD/allclasses-noframe.html java/BioLegato-1.1.1/src/docs/BioPCD/GDE2PCD/constant-values.html java/BioLegato-1.1.1/src/docs/BioPCD/GDE2PCD/deprecated-list.html java/BioLegato-1.1.1/src/docs/BioPCD/GDE2PCD/help-doc.html java/BioLegato-1.1.1/src/docs/BioPCD/GDE2PCD/index-all.html java/BioLegato-1.1.1/src/docs/BioPCD/GDE2PCD/index.html java/BioLegato-1.1.1/src/docs/BioPCD/GDE2PCD/org/ java/BioLegato-1.1.1/src/docs/BioPCD/GDE2PCD/org/biolegato/ java/BioLegato-1.1.1/src/docs/BioPCD/GDE2PCD/org/biolegato/gde2pcd/ java/BioLegato-1.1.1/src/docs/BioPCD/GDE2PCD/org/biolegato/gde2pcd/GDE2PCD.html java/BioLegato-1.1.1/src/docs/BioPCD/GDE2PCD/org/biolegato/gde2pcd/GDEMakeMenus.html java/BioLegato-1.1.1/src/docs/BioPCD/GDE2PCD/org/biolegato/gde2pcd/GDEMenu.html java/BioLegato-1.1.1/src/docs/BioPCD/GDE2PCD/org/biolegato/gde2pcd/GDEMenuParser.html java/BioLegato-1.1.1/src/docs/BioPCD/GDE2PCD/org/biolegato/gde2pcd/class-use/ java/BioLegato-1.1.1/src/docs/BioPCD/GDE2PCD/org/biolegato/gde2pcd/class-use/GDE2PCD.html java/BioLegato-1.1.1/src/docs/BioPCD/GDE2PCD/org/biolegato/gde2pcd/class-use/GDEMakeMenus.html java/BioLegato-1.1.1/src/docs/BioPCD/GDE2PCD/org/biolegato/gde2pcd/class-use/GDEMenu.html java/BioLegato-1.1.1/src/docs/BioPCD/GDE2PCD/org/biolegato/gde2pcd/class-use/GDEMenuParser.html java/BioLegato-1.1.1/src/docs/BioPCD/GDE2PCD/org/biolegato/gde2pcd/package-frame.html java/BioLegato-1.1.1/src/docs/BioPCD/GDE2PCD/org/biolegato/gde2pcd/package-summary.html java/BioLegato-1.1.1/src/docs/BioPCD/GDE2PCD/org/biolegato/gde2pcd/package-tree.html java/BioLegato-1.1.1/src/docs/BioPCD/GDE2PCD/org/biolegato/gde2pcd/package-use.html java/BioLegato-1.1.1/src/docs/BioPCD/GDE2PCD/overview-tree.html java/BioLegato-1.1.1/src/docs/BioPCD/GDE2PCD/package-list java/BioLegato-1.1.1/src/docs/BioPCD/GDE2PCD/script.js java/BioLegato-1.1.1/src/docs/BioPCD/GDE2PCD/stylesheet.css java/BioLegato-1.1.1/src/docs/BioPCD/parser/ java/BioLegato-1.1.1/src/docs/BioPCD/parser/allclasses-frame.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/allclasses-noframe.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/constant-values.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/deprecated-list.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/help-doc.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/index-all.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/index.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/ java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/ java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/ java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/ASTAct.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/ASTArchList.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/ASTArchName.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/ASTBody.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/ASTBool.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/ASTContent.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/ASTDecimal.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/ASTFileFormat.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/ASTFullSQLQuery.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/ASTIdent.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/ASTNumber.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/ASTPanel.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/ASTParam.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/ASTParseDBConnect.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/ASTSystemName.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/ASTTab.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/ASTText.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/ASTbuttonFields.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/ASTdecimalFields.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/ASTdirFields.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/ASTfileFields.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/ASTlistFields.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/ASTnumberFields.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/ASTparseFullMenu.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/ASTparseMenuItem.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/ASTtempfileFields.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/ASTtextAreaFields.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/ASTtextFields.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/CommandThread.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/JJTPCDState.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/Node.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/PCD.ARCH.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/PCD.ListType.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/PCD.OS.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/PCD.PCDMetaTokenManager.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/PCD.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/PCDConstants.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/PCDIO.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/PCDObject.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/PCDTokenManager.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/PCDTreeConstants.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/PCDVisitor.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/ParseException.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/PreProcess.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/RunWindow.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/SimpleCharStream.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/SimpleNode.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/StreamCopier.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/SystemToken.ARCH.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/SystemToken.OS.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/SystemToken.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/Token.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/TokenMgrError.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/class-use/ java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/class-use/ASTAct.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/class-use/ASTArchList.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/class-use/ASTArchName.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/class-use/ASTBody.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/class-use/ASTBool.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/class-use/ASTContent.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/class-use/ASTDecimal.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/class-use/ASTFileFormat.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/class-use/ASTFullSQLQuery.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/class-use/ASTIdent.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/class-use/ASTNumber.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/class-use/ASTPanel.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/class-use/ASTParam.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/class-use/ASTParseDBConnect.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/class-use/ASTSystemName.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/class-use/ASTTab.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/class-use/ASTText.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/class-use/ASTbuttonFields.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/class-use/ASTdecimalFields.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/class-use/ASTdirFields.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/class-use/ASTfileFields.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/class-use/ASTlistFields.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/class-use/ASTnumberFields.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/class-use/ASTparseFullMenu.html java/BioLegato-1.1.1/src/docs/BioPCD/parser/org/biopcd/parser/class-use/ASTparseMenuItem.html 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java/BioLegato-1.1.1/src/docs/Canvases/Sequence/org/biolegato/sequence/data/Seq.Direction.html java/BioLegato-1.1.1/src/docs/Canvases/Sequence/org/biolegato/sequence/data/Seq.Strandedness.html java/BioLegato-1.1.1/src/docs/Canvases/Sequence/org/biolegato/sequence/data/Seq.Topology.html java/BioLegato-1.1.1/src/docs/Canvases/Sequence/org/biolegato/sequence/data/Seq.Type.html java/BioLegato-1.1.1/src/docs/Canvases/Sequence/org/biolegato/sequence/data/Seq.html java/BioLegato-1.1.1/src/docs/Canvases/Sequence/org/biolegato/sequence/data/SequenceWindow.html java/BioLegato-1.1.1/src/docs/Canvases/Sequence/org/biolegato/sequence/data/class-use/ java/BioLegato-1.1.1/src/docs/Canvases/Sequence/org/biolegato/sequence/data/class-use/DataFormat.html java/BioLegato-1.1.1/src/docs/Canvases/Sequence/org/biolegato/sequence/data/class-use/Dataset.html java/BioLegato-1.1.1/src/docs/Canvases/Sequence/org/biolegato/sequence/data/class-use/FastAFile.html 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java/BioLegato-1.1.1/src/docs/Canvases/Sequence/org/biolegato/sequence/data/package-frame.html java/BioLegato-1.1.1/src/docs/Canvases/Sequence/org/biolegato/sequence/data/package-summary.html java/BioLegato-1.1.1/src/docs/Canvases/Sequence/org/biolegato/sequence/data/package-tree.html java/BioLegato-1.1.1/src/docs/Canvases/Sequence/org/biolegato/sequence/data/package-use.html java/BioLegato-1.1.1/src/docs/Canvases/Sequence/overview-frame.html java/BioLegato-1.1.1/src/docs/Canvases/Sequence/overview-summary.html java/BioLegato-1.1.1/src/docs/Canvases/Sequence/overview-tree.html java/BioLegato-1.1.1/src/docs/Canvases/Sequence/package-list java/BioLegato-1.1.1/src/docs/Canvases/Sequence/script.js java/BioLegato-1.1.1/src/docs/Canvases/Sequence/serialized-form.html java/BioLegato-1.1.1/src/docs/Canvases/Sequence/stylesheet.css java/BioLegato-1.1.1/src/docs/Canvases/Tables/ java/BioLegato-1.1.1/src/docs/Canvases/Tables/allclasses-frame.html 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java/BioLegato-1.1.1/src/lib/javacc.jar java/BioLegato-1.1.1/src/lib/junit-3.8.1.jar java/BioLegato-1.1.1/src/lib/junit-4.9.jar java/BioLegato-1.1.1/src/lib/junit.jar java/BioLegato-1.1.1/src/lib/makeman.sh java/BioLegato-1.1.1/src/nbproject/ java/BioLegato-1.1.1/src/nbproject/.cvsignore java/BioLegato-1.1.1/src/nbproject/genfiles.properties java/BioLegato-1.1.1/src/nbproject/jdk.xml java/BioLegato-1.1.1/src/nbproject/nbjdk.properties java/BioLegato-1.1.1/src/nbproject/nbjdk.xml java/BioLegato-1.1.1/src/nbproject/private/ java/BioLegato-1.1.1/src/nbproject/private/private.xml java/BioLegato-1.1.1/src/nbproject/private/private.xml.0.nblh~ java/BioLegato-1.1.1/src/nbproject/project.xml java/BioLegato-1.1.1/src/nbproject/project.xml~ java/BioLegato-1.1.1/src/test/ java/BioLegato-1.1.1/src/test/all.CDS.gde java/BioLegato-1.1.1/src/test/all.gen java/BioLegato-1.1.1/src/test/all.pro.fsa java/BioLegato-1.1.1/src/test/birch_white.png java/BioLegato-1.1.1/src/test/columntest.csv java/BioLegato-1.1.1/src/test/columntest2.csv java/BioLegato-1.1.1/src/test/standard_dna.csv java/BioLegato-1.1.1/src/test/supertest.gen java/BioLegato-1.1.1/src/test/test.blimg java/BioLegato-1.1.1/src/test/test.flat java/BioLegato-1.1.1/src/test/tiger1.jpg java/BioLegato-1.1.1/src/todo.txt java/BioLegato-1.1.1/table.jar java/BioLegato-1.1.1/test/ java/BioLegato-1.1.1/test/README.txt java/BioLegato-1.1.1/test/admin/ java/BioLegato-1.1.1/test/admin/README.txt java/BioLegato-1.1.1/test/admin/setblenv.profile.linux-x86_64.source java/BioLegato-1.1.1/test/admin/setblenv.profile.osx-x86_64.source java/BioLegato-1.1.1/test/bin-linux-x86_64/ java/BioLegato-1.1.1/test/bin-linux-x86_64/README.txt java/BioLegato-1.1.1/test/bin-osx-x86_64/ java/BioLegato-1.1.1/test/bin-osx-x86_64/README.txt java/BioLegato-1.1.1/test/blfiles java/BioLegato-1.1.1/test/bltable java/BioLegato-1.1.1/test/dat/ java/BioLegato-1.1.1/test/dat/README.txt java/BioLegato-1.1.1/test/dat/birch_black_ico.png java/BioLegato-1.1.1/test/dat/blfiles/ java/BioLegato-1.1.1/test/dat/blfiles/PCD/ java/BioLegato-1.1.1/test/dat/blfiles/PCD/Documentation/ java/BioLegato-1.1.1/test/dat/blfiles/PCD/Documentation/ViewDoc.blmenu java/BioLegato-1.1.1/test/dat/blfiles/PCD/Documentation/pcd_order java/BioLegato-1.1.1/test/dat/blfiles/PCD/Edit/ java/BioLegato-1.1.1/test/dat/blfiles/PCD/Edit/BLSORT.blmenu java/BioLegato-1.1.1/test/dat/blfiles/PCD/Edit/CopyOut.blmenu java/BioLegato-1.1.1/test/dat/blfiles/PCD/Edit/Extract.blmenu java/BioLegato-1.1.1/test/dat/blfiles/PCD/Edit/Extract.blmenu~ java/BioLegato-1.1.1/test/dat/blfiles/PCD/Edit/PasteIn.blmenu java/BioLegato-1.1.1/test/dat/blfiles/PCD/Edit/pcd_order java/BioLegato-1.1.1/test/dat/blfiles/PCD/File/ java/BioLegato-1.1.1/test/dat/blfiles/PCD/File/Compress.blmenu java/BioLegato-1.1.1/test/dat/blfiles/PCD/File/ConcatFiles.blmenu java/BioLegato-1.1.1/test/dat/blfiles/PCD/File/Decompress.blmenu java/BioLegato-1.1.1/test/dat/blfiles/PCD/File/DeleteFiles.blmenu java/BioLegato-1.1.1/test/dat/blfiles/PCD/File/Export.blmenu java/BioLegato-1.1.1/test/dat/blfiles/PCD/File/GetFiles.blmenu java/BioLegato-1.1.1/test/dat/blfiles/PCD/File/Makelinks.blmenu java/BioLegato-1.1.1/test/dat/blfiles/PCD/File/NewRow.blmenu java/BioLegato-1.1.1/test/dat/blfiles/PCD/File/OpenDir.blmenu java/BioLegato-1.1.1/test/dat/blfiles/PCD/File/ReName.blmenu java/BioLegato-1.1.1/test/dat/blfiles/PCD/File/Refresh.blmenu java/BioLegato-1.1.1/test/dat/blfiles/PCD/File/SaveSel.blmenu java/BioLegato-1.1.1/test/dat/blfiles/PCD/File/ShortNames.blmenu java/BioLegato-1.1.1/test/dat/blfiles/PCD/File/ViewFile.blmenu java/BioLegato-1.1.1/test/dat/blfiles/PCD/File/pcd_order java/BioLegato-1.1.1/test/dat/blfiles/PCD/pcd_order java/BioLegato-1.1.1/test/dat/blfiles/blfiles.properties java/BioLegato-1.1.1/test/dat/blfiles/seqcolors/ java/BioLegato-1.1.1/test/dat/blfiles/seqcolors/color_notes.txt java/BioLegato-1.1.1/test/dat/blfiles/seqcolors/default.csv java/BioLegato-1.1.1/test/dat/blfiles/seqcolors/standard_marker.csv java/BioLegato-1.1.1/test/dat/blfiles/seqcolors/~color_notes.txt java/BioLegato-1.1.1/test/dat/blgeneric/ java/BioLegato-1.1.1/test/dat/blgeneric/birch.properties~ java/BioLegato-1.1.1/test/dat/blgeneric/blank.obj.bak java/BioLegato-1.1.1/test/dat/blgeneric/blank.png java/BioLegato-1.1.1/test/dat/blgeneric/blgeneric.properties java/BioLegato-1.1.1/test/dat/blgeneric/ldir.param~ java/BioLegato-1.1.1/test/dat/blgeneric/splash.blimg java/BioLegato-1.1.1/test/dat/bltable/ java/BioLegato-1.1.1/test/dat/bltable/PCD/ java/BioLegato-1.1.1/test/dat/bltable/PCD/Documentation/ java/BioLegato-1.1.1/test/dat/bltable/PCD/Documentation/ViewDoc.blmenu java/BioLegato-1.1.1/test/dat/bltable/PCD/Documentation/pcd_order java/BioLegato-1.1.1/test/dat/bltable/PCD/Edit/ java/BioLegato-1.1.1/test/dat/bltable/PCD/Edit/BLSORT.blmenu java/BioLegato-1.1.1/test/dat/bltable/PCD/Edit/CopyOut.blmenu java/BioLegato-1.1.1/test/dat/bltable/PCD/Edit/Extract.blmenu java/BioLegato-1.1.1/test/dat/bltable/PCD/Edit/PasteIn.blmenu java/BioLegato-1.1.1/test/dat/bltable/PCD/Edit/pcd_order java/BioLegato-1.1.1/test/dat/bltable/PCD/File/ java/BioLegato-1.1.1/test/dat/bltable/PCD/File/Export.blmenu java/BioLegato-1.1.1/test/dat/bltable/PCD/File/Extract.blmenu java/BioLegato-1.1.1/test/dat/bltable/PCD/File/ImportCSV.blmenu java/BioLegato-1.1.1/test/dat/bltable/PCD/File/NewRows.blmenu java/BioLegato-1.1.1/test/dat/bltable/PCD/File/NewWindow.blmenu java/BioLegato-1.1.1/test/dat/bltable/PCD/File/PasteCSV.blmenu java/BioLegato-1.1.1/test/dat/bltable/PCD/File/PasteTSV.blmenu java/BioLegato-1.1.1/test/dat/bltable/PCD/File/PrintCSV.blmenu java/BioLegato-1.1.1/test/dat/bltable/PCD/File/PrintTSV.blmenu java/BioLegato-1.1.1/test/dat/bltable/PCD/File/SaveAs.blmenu java/BioLegato-1.1.1/test/dat/bltable/PCD/File/pcd_order java/BioLegato-1.1.1/test/dat/bltable/PCD/Help java/BioLegato-1.1.1/test/dat/bltable/PCD/pcd_order java/BioLegato-1.1.1/test/dat/bltable/bltable.properties java/BioLegato-1.1.1/test/dat/bltable/bltable.properties~ java/BioLegato-1.1.1/test/dat/bltable/sample_data/ java/BioLegato-1.1.1/test/dat/bltable/sample_data/bltable_example.tsv java/BioLegato-1.1.1/test/dat/bltable/seqcolors/ java/BioLegato-1.1.1/test/dat/bltable/seqcolors/color_notes.txt java/BioLegato-1.1.1/test/dat/bltable/seqcolors/default.csv java/BioLegato-1.1.1/test/dat/bltable/seqcolors/standard_marker.csv java/BioLegato-1.1.1/test/dat/bltable/seqcolors/~color_notes.txt java/BioLegato-1.1.1/test/doc/ java/BioLegato-1.1.1/test/doc/README.txt java/BioLegato-1.1.1/test/doc/bioLegato/ java/BioLegato-1.1.1/test/doc/bioLegato/bl_alias.html java/BioLegato-1.1.1/test/doc/bioLegato/bl_compress.html java/BioLegato-1.1.1/test/doc/bioLegato/bl_decompress.html java/BioLegato-1.1.1/test/doc/bioLegato/bl_deletefiles.html java/BioLegato-1.1.1/test/doc/bioLegato/bl_makelinks.html java/BioLegato-1.1.1/test/doc/bioLegato/bl_rename.html java/BioLegato-1.1.1/test/doc/bioLegato/blsort.html java/BioLegato-1.1.1/test/doc/bioLegato/chooseviewer.html java/BioLegato-1.1.1/test/java/ java/BioLegato-1.1.1/test/java/bioLegato/ java/BioLegato-1.1.1/test/java/bioLegato/biolegato.jar java/BioLegato-1.1.1/test/java/bioLegato/biopcd.jar java/BioLegato-1.1.1/test/java/bioLegato/table.jar java/BioLegato-1.1.1/test/local/ java/BioLegato-1.1.1/test/local/README.txt java/BioLegato-1.1.1/test/local/dat/ java/BioLegato-1.1.1/test/local/dat/blfiles/ java/BioLegato-1.1.1/test/local/dat/blfiles/PCD/ java/BioLegato-1.1.1/test/local/dat/blfiles/PCD/File/ java/BioLegato-1.1.1/test/local/dat/blfiles/PCD/File/Grep.blmenu.example java/BioLegato-1.1.1/test/script/ java/BioLegato-1.1.1/test/script/ConfirmBox2.jar java/BioLegato-1.1.1/test/script/DirChooser2.jar java/BioLegato-1.1.1/test/script/ErrorBox2.jar java/BioLegato-1.1.1/test/script/OkayBox2.jar java/BioLegato-1.1.1/test/script/README.txt java/BioLegato-1.1.1/test/script/__pycache__/ java/BioLegato-1.1.1/test/script/__pycache__/browser.cpython-36.pyc java/BioLegato-1.1.1/test/script/bl_alias.py java/BioLegato-1.1.1/test/script/bl_compress.sh java/BioLegato-1.1.1/test/script/bl_decompress.sh java/BioLegato-1.1.1/test/script/bl_deletefiles.sh java/BioLegato-1.1.1/test/script/bl_email.py java/BioLegato-1.1.1/test/script/bl_rename.py java/BioLegato-1.1.1/test/script/bldirtab.py java/BioLegato-1.1.1/test/script/blfiles java/BioLegato-1.1.1/test/script/blsort.py java/BioLegato-1.1.1/test/script/bltable java/BioLegato-1.1.1/test/script/bltsv2name.py java/BioLegato-1.1.1/test/script/browser.py java/BioLegato-1.1.1/test/script/chooseviewer.py java/BioLegato-1.1.1/test/script/makelinks.sh java/BioLegato-1.1.2/ java/BioLegato-1.1.2/ChangeLog.html java/BioLegato-1.1.2/LICENSE.html java/BioLegato-1.1.2/LICENSE.txt java/BioLegato-1.1.2/README.txt java/BioLegato-1.1.2/README_CreateNewVersion.txt java/BioLegato-1.1.2/README_CreateNewVersion.txt~ java/BioLegato-1.1.2/biolegato.jar java/BioLegato-1.1.2/biopcd.jar java/BioLegato-1.1.2/biopcdedit.jar java/BioLegato-1.1.2/docs java/BioLegato-1.1.2/gde2pcd.jar java/BioLegato-1.1.2/image.jar java/BioLegato-1.1.2/manpage.txt java/BioLegato-1.1.2/pcdcanvas.jar java/BioLegato-1.1.2/sequence.jar java/BioLegato-1.1.2/src/ java/BioLegato-1.1.2/src/.DS_Store java/BioLegato-1.1.2/src/.cvsignore java/BioLegato-1.1.2/src/BioPCD/ java/BioLegato-1.1.2/src/BioPCD/.DS_Store java/BioLegato-1.1.2/src/BioPCD/GDE2PCD/ java/BioLegato-1.1.2/src/BioPCD/GDE2PCD/.DS_Store java/BioLegato-1.1.2/src/BioPCD/GDE2PCD/.cvsignore java/BioLegato-1.1.2/src/BioPCD/GDE2PCD/bin/ java/BioLegato-1.1.2/src/BioPCD/GDE2PCD/bin/gde2pcd.jar java/BioLegato-1.1.2/src/BioPCD/GDE2PCD/build.old java/BioLegato-1.1.2/src/BioPCD/GDE2PCD/build.xml java/BioLegato-1.1.2/src/BioPCD/GDE2PCD/package.properties java/BioLegato-1.1.2/src/BioPCD/GDE2PCD/src/ java/BioLegato-1.1.2/src/BioPCD/GDE2PCD/src/org/ java/BioLegato-1.1.2/src/BioPCD/GDE2PCD/src/org/biolegato/ java/BioLegato-1.1.2/src/BioPCD/GDE2PCD/src/org/biolegato/gde2pcd/ java/BioLegato-1.1.2/src/BioPCD/GDE2PCD/src/org/biolegato/gde2pcd/GDE2PCD.java java/BioLegato-1.1.2/src/BioPCD/GDE2PCD/src/org/biolegato/gde2pcd/GDEMakeMenus.java java/BioLegato-1.1.2/src/BioPCD/GDE2PCD/src/org/biolegato/gde2pcd/GDEMenu.java java/BioLegato-1.1.2/src/BioPCD/GDE2PCD/src/org/biolegato/gde2pcd/GDEMenuParser.java java/BioLegato-1.1.2/src/BioPCD/GDE2PCD/src/usage.txt java/BioLegato-1.1.2/src/BioPCD/bin/ java/BioLegato-1.1.2/src/BioPCD/bin/biopcd.jar java/BioLegato-1.1.2/src/BioPCD/bin/gde2pcd.jar java/BioLegato-1.1.2/src/BioPCD/build.xml java/BioLegato-1.1.2/src/BioPCD/parser/ java/BioLegato-1.1.2/src/BioPCD/parser/JJTPCDState.java java/BioLegato-1.1.2/src/BioPCD/parser/Node.java java/BioLegato-1.1.2/src/BioPCD/parser/PCDTreeConstants.java java/BioLegato-1.1.2/src/BioPCD/parser/SimpleNode.java java/BioLegato-1.1.2/src/BioPCD/parser/bin/ java/BioLegato-1.1.2/src/BioPCD/parser/bin/biopcd.jar java/BioLegato-1.1.2/src/BioPCD/parser/build.xml java/BioLegato-1.1.2/src/BioPCD/parser/build.xml~ java/BioLegato-1.1.2/src/BioPCD/parser/package.properties java/BioLegato-1.1.2/src/BioPCD/parser/src/ java/BioLegato-1.1.2/src/BioPCD/parser/src/org/ java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/ java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/icons/ java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/icons/checkbox.png java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/icons/choice_list.svg java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/icons/choicelist.png java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/icons/chooser.png java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/icons/combobox.png java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/icons/commandbutton.png java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/icons/dirchooser.png java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/icons/filechooser.png java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/icons/numberwidget.png java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/icons/panelwidget.png java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/icons/tabbedwidget.png java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/icons/tempfile.png java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/icons/textwidget.png java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/parser/ java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/parser/CommandThread.java java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/parser/CommandThread.java.v1.02 java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/parser/PCDIO.java java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/parser/PCDIO.java.1.0.4.bak1 java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/parser/PCDIO.java~ java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/parser/PCDMenuVisitor java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/parser/PCDMenuVisitor~ java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/parser/PCDObject.java java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/parser/PreProcess.java java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/parser/PreProcess.java.bak1 java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/parser/RunWindow.java java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/parser/StreamCopier.java java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/parser/SystemToken.java java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/parser/pcd.jj.v1.0.4.bak1 java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/parser/pcd.jj.v1.0.4.bak2 java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/parser/pcd.jjt java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/parser/pcd.jjt.1.0.5.1 java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/parser/pcd.jjt.bak1 java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/parser/pcd.jjt.old java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/parser/pcd.jjt~ java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/parser/pcd.jj~ java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/parser/pcd.v1.1.1.jjt.bak java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/sql/ java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/sql/JDBCDBConnection.java java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/sql/PCDSQL.java java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/widgets/ java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/widgets/AbstractFileChooser.java java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/widgets/ChoiceList.java java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/widgets/Chooser.java java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/widgets/CloseableWindow.java java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/widgets/ComboBoxWidget.java java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/widgets/CommandButton.java java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/widgets/DirectoryChooser.java java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/widgets/FileChooser.java java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/widgets/ListWidget.java java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/widgets/NumberWidget.java java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/widgets/PanelWidget.java java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/widgets/SimpleWidget.java java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/widgets/TabbedWidget.java java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/widgets/TempFile.java java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/widgets/TempFile.java.1.0.4.bak2 java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/widgets/TempFile.java.bak1 java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/widgets/TempFile.java.bak2 java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/widgets/TempFile.java~ java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/widgets/TextAreaWidget.java java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/widgets/TextWidget.java java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/widgets/Widget.java java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/widgets/WidgetGenerator.java java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/widgets/WidgetInstance.java java/BioLegato-1.1.2/src/BioPCD/parser/src/org/biopcd/widgets/WidgetTransferHandler.java java/BioLegato-1.1.2/src/Canvases/ java/BioLegato-1.1.2/src/Canvases/.DS_Store java/BioLegato-1.1.2/src/Canvases/BioPCDEditor/ java/BioLegato-1.1.2/src/Canvases/BioPCDEditor/.DS_Store java/BioLegato-1.1.2/src/Canvases/BioPCDEditor/.cvsignore java/BioLegato-1.1.2/src/Canvases/BioPCDEditor/README.txt java/BioLegato-1.1.2/src/Canvases/BioPCDEditor/bin/ java/BioLegato-1.1.2/src/Canvases/BioPCDEditor/bin/biopcdedit.jar java/BioLegato-1.1.2/src/Canvases/BioPCDEditor/build.old java/BioLegato-1.1.2/src/Canvases/BioPCDEditor/build.xml java/BioLegato-1.1.2/src/Canvases/BioPCDEditor/package.properties java/BioLegato-1.1.2/src/Canvases/BioPCDEditor/src/ java/BioLegato-1.1.2/src/Canvases/BioPCDEditor/src/.DS_Store java/BioLegato-1.1.2/src/Canvases/BioPCDEditor/src/org/ java/BioLegato-1.1.2/src/Canvases/BioPCDEditor/src/org/.DS_Store java/BioLegato-1.1.2/src/Canvases/BioPCDEditor/src/org/biopcd/ java/BioLegato-1.1.2/src/Canvases/BioPCDEditor/src/org/biopcd/editor/ java/BioLegato-1.1.2/src/Canvases/BioPCDEditor/src/org/biopcd/editor/.DS_Store java/BioLegato-1.1.2/src/Canvases/BioPCDEditor/src/org/biopcd/editor/MenuCanvas.java java/BioLegato-1.1.2/src/Canvases/BioPCDEditor/src/org/biopcd/editor/MenuWidgetsPanel.java java/BioLegato-1.1.2/src/Canvases/BioPCDEditor/src/org/biopcd/editor/PCDEditor.java java/BioLegato-1.1.2/src/Canvases/BioPCDEditor/src/org/biopcd/editor/PCDEditor.java.1.0.3.bak1 java/BioLegato-1.1.2/src/Canvases/BioPCDEditor/src/org/biopcd/editor/PCDEditor.java~ java/BioLegato-1.1.2/src/Canvases/BioPCDEditor/src/org/biopcd/editor/PanelWidgetGenerator.java java/BioLegato-1.1.2/src/Canvases/Images/ java/BioLegato-1.1.2/src/Canvases/Images/.cvsignore java/BioLegato-1.1.2/src/Canvases/Images/bin/ java/BioLegato-1.1.2/src/Canvases/Images/bin/image.jar java/BioLegato-1.1.2/src/Canvases/Images/build.old java/BioLegato-1.1.2/src/Canvases/Images/build.xml java/BioLegato-1.1.2/src/Canvases/Images/package.properties java/BioLegato-1.1.2/src/Canvases/Images/src/ java/BioLegato-1.1.2/src/Canvases/Images/src/org/ java/BioLegato-1.1.2/src/Canvases/Images/src/org/biolegato/ java/BioLegato-1.1.2/src/Canvases/Images/src/org/biolegato/images/ java/BioLegato-1.1.2/src/Canvases/Images/src/org/biolegato/images/ImageCanvas.java java/BioLegato-1.1.2/src/Canvases/Images/src/org/biolegato/images/ImageCanvas.java.1.0.3.bak1 java/BioLegato-1.1.2/src/Canvases/Images/src/org/biolegato/images/ImageCanvas.java~ java/BioLegato-1.1.2/src/Canvases/Sequence/ java/BioLegato-1.1.2/src/Canvases/Sequence/.cvsignore java/BioLegato-1.1.2/src/Canvases/Sequence/bin/ java/BioLegato-1.1.2/src/Canvases/Sequence/bin/sequence.jar java/BioLegato-1.1.2/src/Canvases/Sequence/build.old java/BioLegato-1.1.2/src/Canvases/Sequence/build.xml java/BioLegato-1.1.2/src/Canvases/Sequence/package.properties java/BioLegato-1.1.2/src/Canvases/Sequence/src/ java/BioLegato-1.1.2/src/Canvases/Sequence/src/org/ java/BioLegato-1.1.2/src/Canvases/Sequence/src/org/biolegato/ java/BioLegato-1.1.2/src/Canvases/Sequence/src/org/biolegato/sequence/ java/BioLegato-1.1.2/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/ java/BioLegato-1.1.2/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/ColourMask.java java/BioLegato-1.1.2/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/SequenceCanvas.java java/BioLegato-1.1.2/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/SequenceCanvas.java.bak1 java/BioLegato-1.1.2/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/SequenceCanvas.java~ java/BioLegato-1.1.2/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/SequenceCanvasObject.java java/BioLegato-1.1.2/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/SequenceCanvasProperties.java java/BioLegato-1.1.2/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/SequenceList.java java/BioLegato-1.1.2/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/SequenceTextArea.java java/BioLegato-1.1.2/src/Canvases/Sequence/src/org/biolegato/sequence/data/ java/BioLegato-1.1.2/src/Canvases/Sequence/src/org/biolegato/sequence/data/DataFormat.java java/BioLegato-1.1.2/src/Canvases/Sequence/src/org/biolegato/sequence/data/DataFormat.java~ java/BioLegato-1.1.2/src/Canvases/Sequence/src/org/biolegato/sequence/data/Dataset.java java/BioLegato-1.1.2/src/Canvases/Sequence/src/org/biolegato/sequence/data/Dataset.java~ java/BioLegato-1.1.2/src/Canvases/Sequence/src/org/biolegato/sequence/data/FastAFile.java java/BioLegato-1.1.2/src/Canvases/Sequence/src/org/biolegato/sequence/data/FastAFile.java~ java/BioLegato-1.1.2/src/Canvases/Sequence/src/org/biolegato/sequence/data/GDEFile.java java/BioLegato-1.1.2/src/Canvases/Sequence/src/org/biolegato/sequence/data/GDEFile.java~ java/BioLegato-1.1.2/src/Canvases/Sequence/src/org/biolegato/sequence/data/GDEFlatfile.java java/BioLegato-1.1.2/src/Canvases/Sequence/src/org/biolegato/sequence/data/GDEFlatfile.java~ java/BioLegato-1.1.2/src/Canvases/Sequence/src/org/biolegato/sequence/data/GenBankFile2008.java java/BioLegato-1.1.2/src/Canvases/Sequence/src/org/biolegato/sequence/data/GenBankFile2008.java~ java/BioLegato-1.1.2/src/Canvases/Sequence/src/org/biolegato/sequence/data/Seq.java java/BioLegato-1.1.2/src/Canvases/Sequence/src/org/biolegato/sequence/data/Seq.java~ java/BioLegato-1.1.2/src/Canvases/Sequence/src/org/biolegato/sequence/data/SequenceWindow.java java/BioLegato-1.1.2/src/Canvases/Sequence/src/org/biolegato/sequence/data/SequenceWindow.java~ java/BioLegato-1.1.2/src/Canvases/Tables/ java/BioLegato-1.1.2/src/Canvases/Tables/.cvsignore java/BioLegato-1.1.2/src/Canvases/Tables/bin/ java/BioLegato-1.1.2/src/Canvases/Tables/bin/table.jar java/BioLegato-1.1.2/src/Canvases/Tables/build.old java/BioLegato-1.1.2/src/Canvases/Tables/build.xml java/BioLegato-1.1.2/src/Canvases/Tables/package.properties java/BioLegato-1.1.2/src/Canvases/Tables/src/ java/BioLegato-1.1.2/src/Canvases/Tables/src/org/ java/BioLegato-1.1.2/src/Canvases/Tables/src/org/biolegato/ java/BioLegato-1.1.2/src/Canvases/Tables/src/org/biolegato/tables/ java/BioLegato-1.1.2/src/Canvases/Tables/src/org/biolegato/tables/CSVFile.jj java/BioLegato-1.1.2/src/Canvases/Tables/src/org/biolegato/tables/CSVFile.jj.1.0.4.bak1 java/BioLegato-1.1.2/src/Canvases/Tables/src/org/biolegato/tables/CSVFile.jj.1.0.4.bak2 java/BioLegato-1.1.2/src/Canvases/Tables/src/org/biolegato/tables/CSVFile.jj.1.0.4.bak3 java/BioLegato-1.1.2/src/Canvases/Tables/src/org/biolegato/tables/CSVFile.jj.1.1.0.bak1 java/BioLegato-1.1.2/src/Canvases/Tables/src/org/biolegato/tables/CSVFile.jj~ java/BioLegato-1.1.2/src/Canvases/Tables/src/org/biolegato/tables/RowHeaderRenderer.java java/BioLegato-1.1.2/src/Canvases/Tables/src/org/biolegato/tables/TSVFile.jj java/BioLegato-1.1.2/src/Canvases/Tables/src/org/biolegato/tables/TSVFile.jj.1.0.4.bak1 java/BioLegato-1.1.2/src/Canvases/Tables/src/org/biolegato/tables/TSVFile.jj.1.0.4.bak2 java/BioLegato-1.1.2/src/Canvases/Tables/src/org/biolegato/tables/TSVFile.jj.1.1.0.bak1 java/BioLegato-1.1.2/src/Canvases/Tables/src/org/biolegato/tables/TSVFile.jj~ java/BioLegato-1.1.2/src/Canvases/Tables/src/org/biolegato/tables/TableCanvas.java java/BioLegato-1.1.2/src/Canvases/Tables/src/org/biolegato/tables/TableCanvas.java.1.0.4.bak1 java/BioLegato-1.1.2/src/Canvases/Tables/src/org/biolegato/tables/TableCanvas.java.1.0.4.bak2 java/BioLegato-1.1.2/src/Canvases/Tables/src/org/biolegato/tables/TableCanvas.java.1.0.4.fix1 java/BioLegato-1.1.2/src/Canvases/Tables/src/org/biolegato/tables/TableCanvas.java.bak2 java/BioLegato-1.1.2/src/Canvases/Tables/src/org/biolegato/tables/TableCanvas.java~ java/BioLegato-1.1.2/src/Canvases/Tables/src/org/biolegato/tables/TableCanvasProperties.java java/BioLegato-1.1.2/src/Canvases/Tables/src/org/biolegato/tables/TableRowModel.java java/BioLegato-1.1.2/src/Canvases/bin/ java/BioLegato-1.1.2/src/Canvases/bin/biopcdedit.jar java/BioLegato-1.1.2/src/Canvases/bin/image.jar java/BioLegato-1.1.2/src/Canvases/bin/pcdcanvas.jar java/BioLegato-1.1.2/src/Canvases/bin/sequence.jar java/BioLegato-1.1.2/src/Canvases/bin/table.jar java/BioLegato-1.1.2/src/Canvases/biopcd/ java/BioLegato-1.1.2/src/Canvases/biopcd/bin/ java/BioLegato-1.1.2/src/Canvases/biopcd/bin/pcdcanvas.jar java/BioLegato-1.1.2/src/Canvases/biopcd/build.xml java/BioLegato-1.1.2/src/Canvases/biopcd/package.properties java/BioLegato-1.1.2/src/Canvases/biopcd/src/ java/BioLegato-1.1.2/src/Canvases/biopcd/src/org/ java/BioLegato-1.1.2/src/Canvases/biopcd/src/org/biopcd/ java/BioLegato-1.1.2/src/Canvases/biopcd/src/org/biopcd/canvas/ java/BioLegato-1.1.2/src/Canvases/biopcd/src/org/biopcd/canvas/PCDCanvas.java java/BioLegato-1.1.2/src/Canvases/biopcd/src/org/biopcd/canvas/PCDCanvas.java.1.0.3.bak1 java/BioLegato-1.1.2/src/Canvases/biopcd/src/org/biopcd/canvas/PCDCanvas.java~ java/BioLegato-1.1.2/src/Canvases/biopcd/src/org/biopcd/canvas/ValuesFile.jj java/BioLegato-1.1.2/src/Canvases/build.xml java/BioLegato-1.1.2/src/Canvases/dbpcd/ java/BioLegato-1.1.2/src/Canvases/dbpcd/bin/ java/BioLegato-1.1.2/src/Canvases/dbpcd/bin/dbcanvas.jar java/BioLegato-1.1.2/src/Canvases/dbpcd/bin/hsqldb.jar java/BioLegato-1.1.2/src/Canvases/dbpcd/build.xml java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/ java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/allclasses-frame.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/allclasses-noframe.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/constant-values.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/deprecated-list.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/help-doc.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/index-all.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/index.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/ java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/ java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/ java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/DBCanvas.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/DBPCD.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/DBPCDConstants.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/DBPCDTokenManager.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/DBSchema.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/EntriesListModel.Entry.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/EntriesListModel.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/JDBCDBConnection.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/PCDSQL.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/ParseException.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/SchemaListModel.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/SimpleCharStream.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/Token.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/TokenMgrError.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/ValuesFile.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/ValuesFileConstants.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/ValuesFileTokenManager.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/ java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/DBCanvas.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/DBPCD.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/DBPCDConstants.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/DBPCDTokenManager.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/DBSchema.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/EntriesListModel.Entry.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/EntriesListModel.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/JDBCDBConnection.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/PCDSQL.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/ParseException.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/SchemaListModel.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/SimpleCharStream.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/Token.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/TokenMgrError.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/ValuesFile.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/ValuesFileConstants.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/ValuesFileTokenManager.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/fields/ java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/fields/BooleanField.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/fields/DBCommand.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/fields/DBCommandThread.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/fields/DBField.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/fields/DBTextField.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/fields/DecimalField.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/fields/KeyableField.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/fields/NumberField.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/fields/ReferenceField.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/ java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/BooleanField.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/DBCommand.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/DBCommandThread.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/DBField.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/DBTextField.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/DecimalField.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/KeyableField.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/NumberField.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/ReferenceField.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/fields/package-frame.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/fields/package-summary.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/fields/package-tree.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/fields/package-use.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/package-frame.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/package-summary.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/package-tree.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/package-use.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/ java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/FieldGenerator.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/FieldTransferHandler.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/SchemaFieldsPanel.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/class-use/ java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/class-use/FieldGenerator.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/class-use/FieldTransferHandler.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/class-use/SchemaFieldsPanel.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/package-frame.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/package-summary.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/package-tree.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/package-use.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/overview-frame.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/overview-summary.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/overview-tree.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/package-list java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/resources/ java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/resources/background.gif java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/resources/tab.gif java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/resources/titlebar.gif java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/resources/titlebar_end.gif java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/serialized-form.html java/BioLegato-1.1.2/src/Canvases/dbpcd/docs/stylesheet.css java/BioLegato-1.1.2/src/Canvases/dbpcd/lib/ java/BioLegato-1.1.2/src/Canvases/dbpcd/lib/hsqldb.jar java/BioLegato-1.1.2/src/Canvases/dbpcd/package.properties java/BioLegato-1.1.2/src/Canvases/dbpcd/src/ java/BioLegato-1.1.2/src/Canvases/dbpcd/src/org/ java/BioLegato-1.1.2/src/Canvases/dbpcd/src/org/biolegato/ java/BioLegato-1.1.2/src/Canvases/dbpcd/src/org/biolegato/database/ java/BioLegato-1.1.2/src/Canvases/dbpcd/src/org/biolegato/database/DBCanvas.java java/BioLegato-1.1.2/src/Canvases/dbpcd/src/org/biolegato/database/DBSchema.java java/BioLegato-1.1.2/src/Canvases/dbpcd/src/org/biolegato/database/EntriesListModel.java java/BioLegato-1.1.2/src/Canvases/dbpcd/src/org/biolegato/database/JDBCDBConnection.java java/BioLegato-1.1.2/src/Canvases/dbpcd/src/org/biolegato/database/PCDSQL.java java/BioLegato-1.1.2/src/Canvases/dbpcd/src/org/biolegato/database/SchemaListModel.java java/BioLegato-1.1.2/src/Canvases/dbpcd/src/org/biolegato/database/ValuesFile.jj java/BioLegato-1.1.2/src/Canvases/dbpcd/src/org/biolegato/database/dbpcd.jj java/BioLegato-1.1.2/src/Canvases/dbpcd/src/org/biolegato/database/fields/ java/BioLegato-1.1.2/src/Canvases/dbpcd/src/org/biolegato/database/fields/BooleanField.java java/BioLegato-1.1.2/src/Canvases/dbpcd/src/org/biolegato/database/fields/DBCommand.java java/BioLegato-1.1.2/src/Canvases/dbpcd/src/org/biolegato/database/fields/DBCommandThread.java java/BioLegato-1.1.2/src/Canvases/dbpcd/src/org/biolegato/database/fields/DBField.java java/BioLegato-1.1.2/src/Canvases/dbpcd/src/org/biolegato/database/fields/DBTextField.java java/BioLegato-1.1.2/src/Canvases/dbpcd/src/org/biolegato/database/fields/DecimalField.java java/BioLegato-1.1.2/src/Canvases/dbpcd/src/org/biolegato/database/fields/KeyableField.java java/BioLegato-1.1.2/src/Canvases/dbpcd/src/org/biolegato/database/fields/NumberField.java java/BioLegato-1.1.2/src/Canvases/dbpcd/src/org/biolegato/database/fields/ReferenceField.java java/BioLegato-1.1.2/src/Canvases/dbpcd/src/org/biolegato/database/schemaeditor/ java/BioLegato-1.1.2/src/Canvases/dbpcd/src/org/biolegato/database/schemaeditor/FieldGenerator.java java/BioLegato-1.1.2/src/Canvases/dbpcd/src/org/biolegato/database/schemaeditor/FieldTransferHandler.java java/BioLegato-1.1.2/src/Canvases/dbpcd/src/org/biolegato/database/schemaeditor/SchemaFieldsPanel.java java/BioLegato-1.1.2/src/Core/ java/BioLegato-1.1.2/src/Core/.DS_Store java/BioLegato-1.1.2/src/Core/.cvsignore java/BioLegato-1.1.2/src/Core/bin/ java/BioLegato-1.1.2/src/Core/bin/biolegato.jar java/BioLegato-1.1.2/src/Core/build.old java/BioLegato-1.1.2/src/Core/build.xml java/BioLegato-1.1.2/src/Core/package.properties java/BioLegato-1.1.2/src/Core/pcd.xml java/BioLegato-1.1.2/src/Core/src/ java/BioLegato-1.1.2/src/Core/src/.DS_Store java/BioLegato-1.1.2/src/Core/src/default.properties java/BioLegato-1.1.2/src/Core/src/manpage.txt java/BioLegato-1.1.2/src/Core/src/optionlist.txt java/BioLegato-1.1.2/src/Core/src/org/ java/BioLegato-1.1.2/src/Core/src/org/.DS_Store java/BioLegato-1.1.2/src/Core/src/org/biolegato/ java/BioLegato-1.1.2/src/Core/src/org/biolegato/.DS_Store java/BioLegato-1.1.2/src/Core/src/org/biolegato/main/ java/BioLegato-1.1.2/src/Core/src/org/biolegato/main/BLMain.java java/BioLegato-1.1.2/src/Core/src/org/biolegato/main/BLMain.java.1.0.5.1.bak1 java/BioLegato-1.1.2/src/Core/src/org/biolegato/main/DataCanvas.java java/BioLegato-1.1.2/src/Core/src/org/biolegato/main/PluginLoader.java java/BioLegato-1.1.2/src/Core/src/org/biolegato/main/PluginWrapper.java java/BioLegato-1.1.2/src/Core/src/org/biolegato/main/StreamCopier.java java/BioLegato-1.1.2/src/README.txt java/BioLegato-1.1.2/src/Turtle/ java/BioLegato-1.1.2/src/Turtle/bin/ java/BioLegato-1.1.2/src/Turtle/bin/turtle.jar java/BioLegato-1.1.2/src/Turtle/build.old java/BioLegato-1.1.2/src/Turtle/build.xml java/BioLegato-1.1.2/src/Turtle/lib/ java/BioLegato-1.1.2/src/Turtle/lib/ant-contrib.jar java/BioLegato-1.1.2/src/Turtle/lib/ant-junit.jar java/BioLegato-1.1.2/src/Turtle/lib/javacc.jar java/BioLegato-1.1.2/src/Turtle/lib/junit-3.8.1.jar java/BioLegato-1.1.2/src/Turtle/lib/junit-4.9.jar java/BioLegato-1.1.2/src/Turtle/lib/junit.jar java/BioLegato-1.1.2/src/Turtle/lib/makeman.sh java/BioLegato-1.1.2/src/Turtle/package.properties java/BioLegato-1.1.2/src/Turtle/selfbuild.xml java/BioLegato-1.1.2/src/Turtle/src/ java/BioLegato-1.1.2/src/Turtle/src/manpages/ java/BioLegato-1.1.2/src/Turtle/src/manpages/CAT.man java/BioLegato-1.1.2/src/Turtle/src/manpages/CD.man java/BioLegato-1.1.2/src/Turtle/src/manpages/COMMANDS.man java/BioLegato-1.1.2/src/Turtle/src/manpages/CP.man java/BioLegato-1.1.2/src/Turtle/src/manpages/CUT.man java/BioLegato-1.1.2/src/Turtle/src/manpages/DATE.man java/BioLegato-1.1.2/src/Turtle/src/manpages/ECHO.man java/BioLegato-1.1.2/src/Turtle/src/manpages/EXPR.man java/BioLegato-1.1.2/src/Turtle/src/manpages/FGREP.man java/BioLegato-1.1.2/src/Turtle/src/manpages/GREP.man java/BioLegato-1.1.2/src/Turtle/src/manpages/HEAD.man java/BioLegato-1.1.2/src/Turtle/src/manpages/MAN.man java/BioLegato-1.1.2/src/Turtle/src/manpages/MKDIRS.man java/BioLegato-1.1.2/src/Turtle/src/manpages/MV.man java/BioLegato-1.1.2/src/Turtle/src/manpages/PASTE.man java/BioLegato-1.1.2/src/Turtle/src/manpages/PWD.man java/BioLegato-1.1.2/src/Turtle/src/manpages/REV.man java/BioLegato-1.1.2/src/Turtle/src/manpages/RM.man java/BioLegato-1.1.2/src/Turtle/src/manpages/RSORT.man java/BioLegato-1.1.2/src/Turtle/src/manpages/SORT.man java/BioLegato-1.1.2/src/Turtle/src/manpages/SYNTAX.man java/BioLegato-1.1.2/src/Turtle/src/manpages/TAIL.man java/BioLegato-1.1.2/src/Turtle/src/manpages/TR.man java/BioLegato-1.1.2/src/Turtle/src/manpages/UNIQ.man java/BioLegato-1.1.2/src/Turtle/src/manpages/WC.man java/BioLegato-1.1.2/src/Turtle/src/org/ java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/ java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/StreamCopier.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/TEnv.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/TurtleFileWriter.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/cmd/ java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/cmd/.cvsignore java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/cmd/.man java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/cmd/CAT.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/cmd/CD.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/cmd/CP.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/cmd/CUT.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/cmd/DATE.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/cmd/ECHO.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/cmd/EXPR.jj java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/cmd/FGREP.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/cmd/GREP.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/cmd/HEAD.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/cmd/MAN.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/cmd/MKDIRS.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/cmd/MV.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/cmd/PASTE.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/cmd/PWD.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/cmd/REV.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/cmd/RM.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/cmd/RSORT.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/cmd/SED.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/cmd/SED.man java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/cmd/SORT.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/cmd/TAC.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/cmd/TAIL.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/cmd/TEST.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/cmd/TR.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/cmd/UNIQ.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/cmd/WC.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/strings/ java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/strings/DoubleExecString.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/strings/ShellString.jj java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/strings/TString.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/tasks/ java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/tasks/AndTask.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/tasks/Command.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/tasks/DualTask.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/tasks/IfTask.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/tasks/LogicTask.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/tasks/OrTask.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/tasks/SequentialTask.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/tasks/TTask.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/tasks/WhileTask.java java/BioLegato-1.1.2/src/Turtle/src/org/turtleshell/turtle.jj java/BioLegato-1.1.2/src/ants.properties java/BioLegato-1.1.2/src/applet_work/ java/BioLegato-1.1.2/src/applet_work/image.html java/BioLegato-1.1.2/src/applet_work/list.html java/BioLegato-1.1.2/src/applet_work/pcdcanvas.html java/BioLegato-1.1.2/src/applet_work/sequence.html java/BioLegato-1.1.2/src/applet_work/sequence.jnlp java/BioLegato-1.1.2/src/applet_work/table.html java/BioLegato-1.1.2/src/bin/ java/BioLegato-1.1.2/src/bin/biolegato.jar java/BioLegato-1.1.2/src/bin/biopcd.jar java/BioLegato-1.1.2/src/bin/biopcdedit.jar java/BioLegato-1.1.2/src/bin/gde2pcd.jar java/BioLegato-1.1.2/src/bin/image.jar java/BioLegato-1.1.2/src/bin/pcdcanvas.jar java/BioLegato-1.1.2/src/bin/sequence.jar java/BioLegato-1.1.2/src/bin/table.jar java/BioLegato-1.1.2/src/biolegato java/BioLegato-1.1.2/src/build.old java/BioLegato-1.1.2/src/build.xml java/BioLegato-1.1.2/src/gde2pcd.sh java/BioLegato-1.1.2/src/gde2pcd.txt java/BioLegato-1.1.2/src/lib/ java/BioLegato-1.1.2/src/lib/ant-contrib.jar java/BioLegato-1.1.2/src/lib/ant-junit.jar java/BioLegato-1.1.2/src/lib/javacc.jar java/BioLegato-1.1.2/src/lib/junit-3.8.1.jar java/BioLegato-1.1.2/src/lib/junit-4.9.jar java/BioLegato-1.1.2/src/lib/junit.jar java/BioLegato-1.1.2/src/lib/makeman.sh java/BioLegato-1.1.2/src/nbproject/ java/BioLegato-1.1.2/src/nbproject/.cvsignore java/BioLegato-1.1.2/src/nbproject/genfiles.properties java/BioLegato-1.1.2/src/nbproject/ide-file-targets.xml java/BioLegato-1.1.2/src/nbproject/jdk.xml java/BioLegato-1.1.2/src/nbproject/nbjdk.properties java/BioLegato-1.1.2/src/nbproject/nbjdk.xml java/BioLegato-1.1.2/src/nbproject/private/ java/BioLegato-1.1.2/src/nbproject/private/private.xml java/BioLegato-1.1.2/src/nbproject/private/private.xml.0.nblh~ java/BioLegato-1.1.2/src/nbproject/project.xml java/BioLegato-1.1.2/src/nbproject/project.xml~ java/BioLegato-1.1.2/src/test/ java/BioLegato-1.1.2/src/test/all.CDS.gde java/BioLegato-1.1.2/src/test/all.gen java/BioLegato-1.1.2/src/test/all.pro.fsa java/BioLegato-1.1.2/src/test/birch_white.png java/BioLegato-1.1.2/src/test/columntest.csv java/BioLegato-1.1.2/src/test/columntest2.csv java/BioLegato-1.1.2/src/test/standard_dna.csv java/BioLegato-1.1.2/src/test/supertest.gen java/BioLegato-1.1.2/src/test/test.blimg java/BioLegato-1.1.2/src/test/test.flat java/BioLegato-1.1.2/src/test/tiger1.jpg java/BioLegato-1.1.2/src/todo.txt java/BioLegato-1.1.2/table.jar java/BioLegato-1.1.2/test/ java/BioLegato-1.1.2/test/README.txt java/BioLegato-1.1.2/test/admin/ java/BioLegato-1.1.2/test/admin/README.txt java/BioLegato-1.1.2/test/admin/setblenv.profile.linux-x86_64.source java/BioLegato-1.1.2/test/admin/setblenv.profile.osx-x86_64.source java/BioLegato-1.1.2/test/bin-linux-x86_64/ java/BioLegato-1.1.2/test/bin-linux-x86_64/README.txt java/BioLegato-1.1.2/test/bin-macos-arm64/ java/BioLegato-1.1.2/test/bin-macos-arm64/README.txt java/BioLegato-1.1.2/test/bin-osx-x86_64/ java/BioLegato-1.1.2/test/bin-osx-x86_64/README.txt java/BioLegato-1.1.2/test/blfiles java/BioLegato-1.1.2/test/bltable java/BioLegato-1.1.2/test/dat/ java/BioLegato-1.1.2/test/dat/README.txt java/BioLegato-1.1.2/test/dat/birch_black_ico.png java/BioLegato-1.1.2/test/dat/blfiles/ java/BioLegato-1.1.2/test/dat/blfiles/PCD/ java/BioLegato-1.1.2/test/dat/blfiles/PCD/Documentation/ java/BioLegato-1.1.2/test/dat/blfiles/PCD/Documentation/ViewDoc.blmenu java/BioLegato-1.1.2/test/dat/blfiles/PCD/Documentation/pcd_order java/BioLegato-1.1.2/test/dat/blfiles/PCD/Edit/ java/BioLegato-1.1.2/test/dat/blfiles/PCD/Edit/BLSORT.blmenu java/BioLegato-1.1.2/test/dat/blfiles/PCD/Edit/CopyOut.blmenu java/BioLegato-1.1.2/test/dat/blfiles/PCD/Edit/Extract.blmenu java/BioLegato-1.1.2/test/dat/blfiles/PCD/Edit/Extract.blmenu~ java/BioLegato-1.1.2/test/dat/blfiles/PCD/Edit/PasteIn.blmenu java/BioLegato-1.1.2/test/dat/blfiles/PCD/Edit/pcd_order java/BioLegato-1.1.2/test/dat/blfiles/PCD/File/ java/BioLegato-1.1.2/test/dat/blfiles/PCD/File/Compress.blmenu java/BioLegato-1.1.2/test/dat/blfiles/PCD/File/ConcatFiles.blmenu java/BioLegato-1.1.2/test/dat/blfiles/PCD/File/Decompress.blmenu java/BioLegato-1.1.2/test/dat/blfiles/PCD/File/DeleteFiles.blmenu java/BioLegato-1.1.2/test/dat/blfiles/PCD/File/Export.blmenu java/BioLegato-1.1.2/test/dat/blfiles/PCD/File/GetFiles.blmenu java/BioLegato-1.1.2/test/dat/blfiles/PCD/File/Makelinks.blmenu java/BioLegato-1.1.2/test/dat/blfiles/PCD/File/NewRow.blmenu java/BioLegato-1.1.2/test/dat/blfiles/PCD/File/OpenDir.blmenu java/BioLegato-1.1.2/test/dat/blfiles/PCD/File/ReName.blmenu java/BioLegato-1.1.2/test/dat/blfiles/PCD/File/Refresh.blmenu java/BioLegato-1.1.2/test/dat/blfiles/PCD/File/SaveSel.blmenu java/BioLegato-1.1.2/test/dat/blfiles/PCD/File/ShortNames.blmenu java/BioLegato-1.1.2/test/dat/blfiles/PCD/File/ViewFile.blmenu java/BioLegato-1.1.2/test/dat/blfiles/PCD/File/pcd_order java/BioLegato-1.1.2/test/dat/blfiles/PCD/pcd_order java/BioLegato-1.1.2/test/dat/blfiles/blfiles.properties java/BioLegato-1.1.2/test/dat/blfiles/seqcolors/ java/BioLegato-1.1.2/test/dat/blfiles/seqcolors/color_notes.txt java/BioLegato-1.1.2/test/dat/blfiles/seqcolors/default.csv java/BioLegato-1.1.2/test/dat/blfiles/seqcolors/standard_marker.csv java/BioLegato-1.1.2/test/dat/blfiles/seqcolors/~color_notes.txt java/BioLegato-1.1.2/test/dat/blgeneric/ java/BioLegato-1.1.2/test/dat/blgeneric/birch.properties~ java/BioLegato-1.1.2/test/dat/blgeneric/blank.obj.bak java/BioLegato-1.1.2/test/dat/blgeneric/blank.png java/BioLegato-1.1.2/test/dat/blgeneric/blgeneric.properties java/BioLegato-1.1.2/test/dat/blgeneric/ldir.param~ java/BioLegato-1.1.2/test/dat/blgeneric/splash.blimg java/BioLegato-1.1.2/test/dat/bltable/ java/BioLegato-1.1.2/test/dat/bltable/PCD/ java/BioLegato-1.1.2/test/dat/bltable/PCD/Documentation/ java/BioLegato-1.1.2/test/dat/bltable/PCD/Documentation/ViewDoc.blmenu java/BioLegato-1.1.2/test/dat/bltable/PCD/Documentation/pcd_order java/BioLegato-1.1.2/test/dat/bltable/PCD/Edit/ java/BioLegato-1.1.2/test/dat/bltable/PCD/Edit/BLSORT.blmenu java/BioLegato-1.1.2/test/dat/bltable/PCD/Edit/CopyOut.blmenu java/BioLegato-1.1.2/test/dat/bltable/PCD/Edit/Extract.blmenu java/BioLegato-1.1.2/test/dat/bltable/PCD/Edit/PasteIn.blmenu java/BioLegato-1.1.2/test/dat/bltable/PCD/Edit/pcd_order java/BioLegato-1.1.2/test/dat/bltable/PCD/File/ java/BioLegato-1.1.2/test/dat/bltable/PCD/File/Export.blmenu java/BioLegato-1.1.2/test/dat/bltable/PCD/File/Extract.blmenu java/BioLegato-1.1.2/test/dat/bltable/PCD/File/ImportCSV.blmenu java/BioLegato-1.1.2/test/dat/bltable/PCD/File/NewRows.blmenu java/BioLegato-1.1.2/test/dat/bltable/PCD/File/NewWindow.blmenu java/BioLegato-1.1.2/test/dat/bltable/PCD/File/PasteCSV.blmenu java/BioLegato-1.1.2/test/dat/bltable/PCD/File/PasteTSV.blmenu java/BioLegato-1.1.2/test/dat/bltable/PCD/File/PrintCSV.blmenu java/BioLegato-1.1.2/test/dat/bltable/PCD/File/PrintTSV.blmenu java/BioLegato-1.1.2/test/dat/bltable/PCD/File/SaveAs.blmenu java/BioLegato-1.1.2/test/dat/bltable/PCD/File/pcd_order java/BioLegato-1.1.2/test/dat/bltable/PCD/Help java/BioLegato-1.1.2/test/dat/bltable/PCD/pcd_order java/BioLegato-1.1.2/test/dat/bltable/bltable.properties java/BioLegato-1.1.2/test/dat/bltable/bltable.properties~ java/BioLegato-1.1.2/test/dat/bltable/sample_data/ java/BioLegato-1.1.2/test/dat/bltable/sample_data/bltable_example.tsv java/BioLegato-1.1.2/test/dat/bltable/seqcolors/ java/BioLegato-1.1.2/test/dat/bltable/seqcolors/color_notes.txt java/BioLegato-1.1.2/test/dat/bltable/seqcolors/default.csv java/BioLegato-1.1.2/test/dat/bltable/seqcolors/standard_marker.csv java/BioLegato-1.1.2/test/dat/bltable/seqcolors/~color_notes.txt java/BioLegato-1.1.2/test/doc/ java/BioLegato-1.1.2/test/doc/README.txt java/BioLegato-1.1.2/test/doc/bioLegato/ java/BioLegato-1.1.2/test/doc/bioLegato/bl_alias.html java/BioLegato-1.1.2/test/doc/bioLegato/bl_compress.html java/BioLegato-1.1.2/test/doc/bioLegato/bl_decompress.html java/BioLegato-1.1.2/test/doc/bioLegato/bl_deletefiles.html java/BioLegato-1.1.2/test/doc/bioLegato/bl_makelinks.html java/BioLegato-1.1.2/test/doc/bioLegato/bl_rename.html java/BioLegato-1.1.2/test/doc/bioLegato/blsort.html java/BioLegato-1.1.2/test/doc/bioLegato/chooseviewer.html java/BioLegato-1.1.2/test/java/ java/BioLegato-1.1.2/test/java/bioLegato/ java/BioLegato-1.1.2/test/java/bioLegato/biolegato.jar java/BioLegato-1.1.2/test/java/bioLegato/biopcd.jar java/BioLegato-1.1.2/test/java/bioLegato/table.jar java/BioLegato-1.1.2/test/local/ java/BioLegato-1.1.2/test/local/README.txt java/BioLegato-1.1.2/test/local/dat/ java/BioLegato-1.1.2/test/local/dat/blfiles/ java/BioLegato-1.1.2/test/local/dat/blfiles/PCD/ java/BioLegato-1.1.2/test/local/dat/blfiles/PCD/File/ java/BioLegato-1.1.2/test/local/dat/blfiles/PCD/File/Grep.blmenu.example java/BioLegato-1.1.2/test/script/ java/BioLegato-1.1.2/test/script/ConfirmBox2.jar java/BioLegato-1.1.2/test/script/DirChooser2.jar java/BioLegato-1.1.2/test/script/ErrorBox2.jar java/BioLegato-1.1.2/test/script/OkayBox2.jar java/BioLegato-1.1.2/test/script/README.txt java/BioLegato-1.1.2/test/script/__pycache__/ java/BioLegato-1.1.2/test/script/__pycache__/browser.cpython-36.pyc java/BioLegato-1.1.2/test/script/bl_alias.py java/BioLegato-1.1.2/test/script/bl_compress.sh java/BioLegato-1.1.2/test/script/bl_decompress.sh java/BioLegato-1.1.2/test/script/bl_deletefiles.sh java/BioLegato-1.1.2/test/script/bl_email.py java/BioLegato-1.1.2/test/script/bl_rename.py java/BioLegato-1.1.2/test/script/bldirtab.py java/BioLegato-1.1.2/test/script/blfiles java/BioLegato-1.1.2/test/script/blsort.py java/BioLegato-1.1.2/test/script/bltable java/BioLegato-1.1.2/test/script/bltsv2name.py java/BioLegato-1.1.2/test/script/browser.py java/BioLegato-1.1.2/test/script/chooseviewer.py java/BioLegato-1.1.2/test/script/makelinks.sh java/XSLoader.3pm.gz java/cytoscape/ java/cytoscape/.install4j/ java/cytoscape/.install4j/response.varfile java/cytoscape/.install4j/Cytoscape.png java/cytoscape/.install4j/uninstall.png java/cytoscape/.install4j/inst_jre.cfg java/cytoscape/.install4j/i4jruntime.jar java/cytoscape/.install4j/MessagesDefault java/cytoscape/.install4j/i4jparams.conf java/cytoscape/.install4j/stats.properties java/cytoscape/.install4j/i4jempty.ttf java/cytoscape/.install4j/user.jar java/cytoscape/.install4j/launcher9f9f67a4.jar java/cytoscape/.install4j/launcher2bfa42ba.jar java/cytoscape/.install4j/launcher0.jar java/cytoscape/.install4j/i4j_extf_3_1yh2kyd.xsl java/cytoscape/.install4j/libi4jinst2.dylib 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java/cytoscape/framework/examples/karaf-camel-example/karaf-camel-example-features/src/main/feature/feature.xml java/cytoscape/framework/examples/karaf-camel-example/karaf-camel-example-features/pom.xml java/cytoscape/framework/examples/karaf-camel-example/karaf-camel-example-java/ java/cytoscape/framework/examples/karaf-camel-example/karaf-camel-example-java/src/ java/cytoscape/framework/examples/karaf-camel-example/karaf-camel-example-java/src/main/ java/cytoscape/framework/examples/karaf-camel-example/karaf-camel-example-java/src/main/java/ java/cytoscape/framework/examples/karaf-camel-example/karaf-camel-example-java/src/main/java/org/ java/cytoscape/framework/examples/karaf-camel-example/karaf-camel-example-java/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-camel-example/karaf-camel-example-java/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-camel-example/karaf-camel-example-java/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-camel-example/karaf-camel-example-java/src/main/java/org/apache/karaf/examples/camel/ java/cytoscape/framework/examples/karaf-camel-example/karaf-camel-example-java/src/main/java/org/apache/karaf/examples/camel/java/ java/cytoscape/framework/examples/karaf-camel-example/karaf-camel-example-java/src/main/java/org/apache/karaf/examples/camel/java/ExampleCamelRouteBuilder.java java/cytoscape/framework/examples/karaf-camel-example/karaf-camel-example-java/src/main/resources/ java/cytoscape/framework/examples/karaf-camel-example/karaf-camel-example-java/src/main/resources/OSGI-INF/ java/cytoscape/framework/examples/karaf-camel-example/karaf-camel-example-java/src/main/resources/OSGI-INF/blueprint/ java/cytoscape/framework/examples/karaf-camel-example/karaf-camel-example-java/src/main/resources/OSGI-INF/blueprint/route.xml java/cytoscape/framework/examples/karaf-camel-example/karaf-camel-example-java/pom.xml java/cytoscape/framework/examples/karaf-camel-example/pom.xml java/cytoscape/framework/examples/karaf-command-example/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-api/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-api/src/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-api/src/main/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-api/src/main/java/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-api/src/main/java/org/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-api/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-api/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-api/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-api/src/main/java/org/apache/karaf/examples/command/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-api/src/main/java/org/apache/karaf/examples/command/api/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-api/src/main/java/org/apache/karaf/examples/command/api/Booking.java java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-api/src/main/java/org/apache/karaf/examples/command/api/BookingService.java java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-api/pom.xml java/cytoscape/framework/examples/karaf-command-example/README.md java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-command/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-command/src/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-command/src/main/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-command/src/main/java/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-command/src/main/java/org/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-command/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-command/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-command/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-command/src/main/java/org/apache/karaf/examples/command/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-command/src/main/java/org/apache/karaf/examples/command/command/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-command/src/main/java/org/apache/karaf/examples/command/command/AddCommand.java java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-command/src/main/java/org/apache/karaf/examples/command/command/ListCommand.java java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-command/src/main/java/org/apache/karaf/examples/command/command/RemoveCommand.java java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-command/src/main/java/org/apache/karaf/examples/command/completers/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-command/src/main/java/org/apache/karaf/examples/command/completers/BookingIdCompleter.java java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-command/pom.xml java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-features/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-features/src/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-features/src/main/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-features/src/main/feature/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-features/src/main/feature/feature.xml java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-features/pom.xml java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-provider/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-provider/src/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-provider/src/main/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-provider/src/main/java/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-provider/src/main/java/org/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-provider/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-provider/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-provider/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-provider/src/main/java/org/apache/karaf/examples/command/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-provider/src/main/java/org/apache/karaf/examples/command/provider/ java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-provider/src/main/java/org/apache/karaf/examples/command/provider/Activator.java java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-provider/src/main/java/org/apache/karaf/examples/command/provider/BookingServiceMemoryImpl.java java/cytoscape/framework/examples/karaf-command-example/karaf-command-example-provider/pom.xml java/cytoscape/framework/examples/karaf-command-example/pom.xml java/cytoscape/framework/examples/karaf-config-example/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-blueprint/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-blueprint/src/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-blueprint/src/main/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-blueprint/src/main/java/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-blueprint/src/main/java/org/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-blueprint/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-blueprint/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-blueprint/src/main/java/org/apache/karaf/example/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-blueprint/src/main/java/org/apache/karaf/example/config/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-blueprint/src/main/java/org/apache/karaf/example/config/blueprint/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-blueprint/src/main/java/org/apache/karaf/example/config/blueprint/DisplayBean.java java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-blueprint/src/main/resources/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-blueprint/src/main/resources/OSGI-INF/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-blueprint/src/main/resources/OSGI-INF/blueprint/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-blueprint/src/main/resources/OSGI-INF/blueprint/config.xml java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-blueprint/pom.xml java/cytoscape/framework/examples/karaf-config-example/README.md java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-features/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-features/src/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-features/src/main/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-features/src/main/feature/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-features/src/main/feature/feature.xml java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-features/pom.xml java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-listener/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-listener/src/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-listener/src/main/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-listener/src/main/java/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-listener/src/main/java/org/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-listener/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-listener/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-listener/src/main/java/org/apache/karaf/example/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-listener/src/main/java/org/apache/karaf/example/config/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-listener/src/main/java/org/apache/karaf/example/config/listener/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-listener/src/main/java/org/apache/karaf/example/config/listener/Activator.java java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-listener/pom.xml java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-managed-factory/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-managed-factory/src/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-managed-factory/src/main/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-managed-factory/src/main/java/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-managed-factory/src/main/java/org/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-managed-factory/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-managed-factory/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-managed-factory/src/main/java/org/apache/karaf/example/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-managed-factory/src/main/java/org/apache/karaf/example/config/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-managed-factory/src/main/java/org/apache/karaf/example/config/managedfactory/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-managed-factory/src/main/java/org/apache/karaf/example/config/managedfactory/Activator.java java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-managed-factory/pom.xml java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-managed/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-managed/src/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-managed/src/main/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-managed/src/main/java/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-managed/src/main/java/org/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-managed/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-managed/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-managed/src/main/java/org/apache/karaf/example/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-managed/src/main/java/org/apache/karaf/example/config/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-managed/src/main/java/org/apache/karaf/example/config/managed/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-managed/src/main/java/org/apache/karaf/example/config/managed/Activator.java java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-managed/pom.xml java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-scr/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-scr/src/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-scr/src/main/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-scr/src/main/java/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-scr/src/main/java/org/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-scr/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-scr/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-scr/src/main/java/org/apache/karaf/example/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-scr/src/main/java/org/apache/karaf/example/config/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-scr/src/main/java/org/apache/karaf/example/config/scr/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-scr/src/main/java/org/apache/karaf/example/config/scr/MyComponent.java java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-scr/pom.xml java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-static/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-static/src/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-static/src/main/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-static/src/main/java/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-static/src/main/java/org/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-static/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-static/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-static/src/main/java/org/apache/karaf/example/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-static/src/main/java/org/apache/karaf/example/config/ java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-static/src/main/java/org/apache/karaf/example/config/Activator.java java/cytoscape/framework/examples/karaf-config-example/karaf-config-example-static/pom.xml java/cytoscape/framework/examples/karaf-config-example/pom.xml java/cytoscape/framework/examples/karaf-deployer-example/ java/cytoscape/framework/examples/karaf-deployer-example/src/ java/cytoscape/framework/examples/karaf-deployer-example/src/main/ java/cytoscape/framework/examples/karaf-deployer-example/src/main/java/ java/cytoscape/framework/examples/karaf-deployer-example/src/main/java/org/ java/cytoscape/framework/examples/karaf-deployer-example/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-deployer-example/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-deployer-example/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-deployer-example/src/main/java/org/apache/karaf/examples/deployer/ java/cytoscape/framework/examples/karaf-deployer-example/src/main/java/org/apache/karaf/examples/deployer/ExampleDeployer.java java/cytoscape/framework/examples/karaf-deployer-example/README.md java/cytoscape/framework/examples/karaf-deployer-example/pom.xml java/cytoscape/framework/examples/karaf-docker-example/ java/cytoscape/framework/examples/karaf-docker-example/karaf-docker-example-app/ java/cytoscape/framework/examples/karaf-docker-example/karaf-docker-example-app/src/ java/cytoscape/framework/examples/karaf-docker-example/karaf-docker-example-app/src/main/ java/cytoscape/framework/examples/karaf-docker-example/karaf-docker-example-app/src/main/java/ java/cytoscape/framework/examples/karaf-docker-example/karaf-docker-example-app/src/main/java/org/ java/cytoscape/framework/examples/karaf-docker-example/karaf-docker-example-app/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-docker-example/karaf-docker-example-app/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-docker-example/karaf-docker-example-app/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-docker-example/karaf-docker-example-app/src/main/java/org/apache/karaf/examples/docker/ java/cytoscape/framework/examples/karaf-docker-example/karaf-docker-example-app/src/main/java/org/apache/karaf/examples/docker/ExampleServlet.java java/cytoscape/framework/examples/karaf-docker-example/karaf-docker-example-app/pom.xml java/cytoscape/framework/examples/karaf-docker-example/README.md java/cytoscape/framework/examples/karaf-docker-example/karaf-docker-example-dynamic-dist/ java/cytoscape/framework/examples/karaf-docker-example/karaf-docker-example-dynamic-dist/pom.xml java/cytoscape/framework/examples/karaf-docker-example/karaf-docker-example-static-dist/ java/cytoscape/framework/examples/karaf-docker-example/karaf-docker-example-static-dist/k8s/ java/cytoscape/framework/examples/karaf-docker-example/karaf-docker-example-static-dist/k8s/karaf-docker-example-static-dist.yaml java/cytoscape/framework/examples/karaf-docker-example/karaf-docker-example-static-dist/pom.xml java/cytoscape/framework/examples/karaf-docker-example/pom.xml java/cytoscape/framework/examples/karaf-dump-example/ java/cytoscape/framework/examples/karaf-dump-example/src/ java/cytoscape/framework/examples/karaf-dump-example/src/main/ java/cytoscape/framework/examples/karaf-dump-example/src/main/java/ java/cytoscape/framework/examples/karaf-dump-example/src/main/java/org/ java/cytoscape/framework/examples/karaf-dump-example/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-dump-example/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-dump-example/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-dump-example/src/main/java/org/apache/karaf/examples/dump/ java/cytoscape/framework/examples/karaf-dump-example/src/main/java/org/apache/karaf/examples/dump/ScreenshotDumpProvider.java java/cytoscape/framework/examples/karaf-dump-example/README.md java/cytoscape/framework/examples/karaf-dump-example/pom.xml java/cytoscape/framework/examples/karaf-http-resource-example/ java/cytoscape/framework/examples/karaf-http-resource-example/README.md java/cytoscape/framework/examples/karaf-http-resource-example/karaf-http-resource-example-features/ java/cytoscape/framework/examples/karaf-http-resource-example/karaf-http-resource-example-features/src/ java/cytoscape/framework/examples/karaf-http-resource-example/karaf-http-resource-example-features/src/main/ java/cytoscape/framework/examples/karaf-http-resource-example/karaf-http-resource-example-features/src/main/feature/ java/cytoscape/framework/examples/karaf-http-resource-example/karaf-http-resource-example-features/src/main/feature/feature.xml java/cytoscape/framework/examples/karaf-http-resource-example/karaf-http-resource-example-features/pom.xml java/cytoscape/framework/examples/karaf-http-resource-example/karaf-http-resource-example-whiteboard/ java/cytoscape/framework/examples/karaf-http-resource-example/karaf-http-resource-example-whiteboard/src/ java/cytoscape/framework/examples/karaf-http-resource-example/karaf-http-resource-example-whiteboard/src/main/ java/cytoscape/framework/examples/karaf-http-resource-example/karaf-http-resource-example-whiteboard/src/main/java/ java/cytoscape/framework/examples/karaf-http-resource-example/karaf-http-resource-example-whiteboard/src/main/java/org/ java/cytoscape/framework/examples/karaf-http-resource-example/karaf-http-resource-example-whiteboard/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-http-resource-example/karaf-http-resource-example-whiteboard/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-http-resource-example/karaf-http-resource-example-whiteboard/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-http-resource-example/karaf-http-resource-example-whiteboard/src/main/java/org/apache/karaf/examples/http/ java/cytoscape/framework/examples/karaf-http-resource-example/karaf-http-resource-example-whiteboard/src/main/java/org/apache/karaf/examples/http/resource/ java/cytoscape/framework/examples/karaf-http-resource-example/karaf-http-resource-example-whiteboard/src/main/java/org/apache/karaf/examples/http/resource/whiteboard/ java/cytoscape/framework/examples/karaf-http-resource-example/karaf-http-resource-example-whiteboard/src/main/java/org/apache/karaf/examples/http/resource/whiteboard/ExampleResource.java java/cytoscape/framework/examples/karaf-http-resource-example/karaf-http-resource-example-whiteboard/src/main/resources/ java/cytoscape/framework/examples/karaf-http-resource-example/karaf-http-resource-example-whiteboard/src/main/resources/resources/ java/cytoscape/framework/examples/karaf-http-resource-example/karaf-http-resource-example-whiteboard/src/main/resources/resources/index.html java/cytoscape/framework/examples/karaf-http-resource-example/karaf-http-resource-example-whiteboard/pom.xml java/cytoscape/framework/examples/karaf-http-resource-example/pom.xml java/cytoscape/framework/examples/karaf-itest-example/ java/cytoscape/framework/examples/karaf-itest-example/src/ java/cytoscape/framework/examples/karaf-itest-example/src/test/ java/cytoscape/framework/examples/karaf-itest-example/src/test/java/ java/cytoscape/framework/examples/karaf-itest-example/src/test/java/org/ java/cytoscape/framework/examples/karaf-itest-example/src/test/java/org/apache/ java/cytoscape/framework/examples/karaf-itest-example/src/test/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-itest-example/src/test/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-itest-example/src/test/java/org/apache/karaf/examples/itests/ java/cytoscape/framework/examples/karaf-itest-example/src/test/java/org/apache/karaf/examples/itests/ExampleITest.java java/cytoscape/framework/examples/karaf-itest-example/src/test/java/org/apache/karaf/examples/itests/ExampleWithConfigITest.java java/cytoscape/framework/examples/karaf-itest-example/README.md java/cytoscape/framework/examples/karaf-itest-example/pom.xml java/cytoscape/framework/examples/karaf-jaas-example/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-app/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-app/src/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-app/src/main/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-app/src/main/java/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-app/src/main/java/org/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-app/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-app/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-app/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-app/src/main/java/org/apache/karaf/examples/jaas/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-app/src/main/java/org/apache/karaf/examples/jaas/app/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-app/src/main/java/org/apache/karaf/examples/jaas/app/JaasExampleCommand.java java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-app/src/main/java/org/apache/karaf/examples/jaas/app/SecuredService.java java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-app/src/main/java/org/apache/karaf/examples/jaas/app/SecuredServiceImpl.java java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-app/pom.xml java/cytoscape/framework/examples/karaf-jaas-example/README.md java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-features/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-features/src/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-features/src/main/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-features/src/main/feature/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-features/src/main/feature/feature.xml java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-features/pom.xml java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-wab/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-wab/src/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-wab/src/main/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-wab/src/main/java/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-wab/src/main/java/org/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-wab/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-wab/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-wab/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-wab/src/main/java/org/apache/karaf/examples/jaas/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-wab/src/main/java/org/apache/karaf/examples/jaas/wab/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-wab/src/main/java/org/apache/karaf/examples/jaas/wab/ExampleServlet.java java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-wab/src/main/webapp/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-wab/src/main/webapp/WEB-INF/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-wab/src/main/webapp/WEB-INF/web.xml java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-wab/pom.xml java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-war/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-war/src/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-war/src/main/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-war/src/main/webapp/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-war/src/main/webapp/WEB-INF/ java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-war/src/main/webapp/WEB-INF/web.xml java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-war/src/main/webapp/index.jsp java/cytoscape/framework/examples/karaf-jaas-example/karaf-jaas-example-war/pom.xml java/cytoscape/framework/examples/karaf-jaas-example/pom.xml java/cytoscape/framework/examples/karaf-jdbc-example/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-api/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-api/src/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-api/src/main/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-api/src/main/java/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-api/src/main/java/org/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-api/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-api/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-api/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-api/src/main/java/org/apache/karaf/examples/jdbc/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-api/src/main/java/org/apache/karaf/examples/jdbc/api/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-api/src/main/java/org/apache/karaf/examples/jdbc/api/Booking.java java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-api/src/main/java/org/apache/karaf/examples/jdbc/api/BookingService.java java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-api/pom.xml java/cytoscape/framework/examples/karaf-jdbc-example/README.md java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-command/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-command/src/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-command/src/main/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-command/src/main/java/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-command/src/main/java/org/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-command/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-command/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-command/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-command/src/main/java/org/apache/karaf/examples/jdbc/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-command/src/main/java/org/apache/karaf/examples/jdbc/command/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-command/src/main/java/org/apache/karaf/examples/jdbc/command/AddCommand.java java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-command/src/main/java/org/apache/karaf/examples/jdbc/command/GetCommand.java java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-command/src/main/java/org/apache/karaf/examples/jdbc/command/ListCommand.java java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-command/src/main/java/org/apache/karaf/examples/jdbc/command/RemoveCommand.java java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-command/src/main/java/org/apache/karaf/examples/jdbc/completers/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-command/src/main/java/org/apache/karaf/examples/jdbc/completers/BookingIdCompleter.java java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-command/pom.xml java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-features/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-features/src/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-features/src/main/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-features/src/main/feature/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-features/src/main/feature/feature.xml java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-features/pom.xml java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-provider/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-provider/src/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-provider/src/main/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-provider/src/main/java/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-provider/src/main/java/org/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-provider/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-provider/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-provider/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-provider/src/main/java/org/apache/karaf/examples/jdbc/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-provider/src/main/java/org/apache/karaf/examples/jdbc/provider/ java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-provider/src/main/java/org/apache/karaf/examples/jdbc/provider/BookingServiceJdbcImpl.java java/cytoscape/framework/examples/karaf-jdbc-example/karaf-jdbc-example-provider/pom.xml java/cytoscape/framework/examples/karaf-jdbc-example/pom.xml java/cytoscape/framework/examples/karaf-jms-example/ java/cytoscape/framework/examples/karaf-jms-example/karaf-jms-example-command/ java/cytoscape/framework/examples/karaf-jms-example/karaf-jms-example-command/src/ java/cytoscape/framework/examples/karaf-jms-example/karaf-jms-example-command/src/main/ java/cytoscape/framework/examples/karaf-jms-example/karaf-jms-example-command/src/main/java/ java/cytoscape/framework/examples/karaf-jms-example/karaf-jms-example-command/src/main/java/org/ java/cytoscape/framework/examples/karaf-jms-example/karaf-jms-example-command/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-jms-example/karaf-jms-example-command/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-jms-example/karaf-jms-example-command/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-jms-example/karaf-jms-example-command/src/main/java/org/apache/karaf/examples/jms/ java/cytoscape/framework/examples/karaf-jms-example/karaf-jms-example-command/src/main/java/org/apache/karaf/examples/jms/command/ java/cytoscape/framework/examples/karaf-jms-example/karaf-jms-example-command/src/main/java/org/apache/karaf/examples/jms/command/ConsumeCommand.java java/cytoscape/framework/examples/karaf-jms-example/karaf-jms-example-command/src/main/java/org/apache/karaf/examples/jms/command/SendCommand.java java/cytoscape/framework/examples/karaf-jms-example/karaf-jms-example-command/pom.xml java/cytoscape/framework/examples/karaf-jms-example/README.md java/cytoscape/framework/examples/karaf-jms-example/karaf-jms-example-features/ java/cytoscape/framework/examples/karaf-jms-example/karaf-jms-example-features/src/ java/cytoscape/framework/examples/karaf-jms-example/karaf-jms-example-features/src/main/ java/cytoscape/framework/examples/karaf-jms-example/karaf-jms-example-features/src/main/feature/ java/cytoscape/framework/examples/karaf-jms-example/karaf-jms-example-features/src/main/feature/feature.xml java/cytoscape/framework/examples/karaf-jms-example/karaf-jms-example-features/pom.xml java/cytoscape/framework/examples/karaf-jms-example/pom.xml java/cytoscape/framework/examples/karaf-jpa-example/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-command/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-command/src/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-command/src/main/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-command/src/main/java/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-command/src/main/java/org/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-command/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-command/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-command/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-command/src/main/java/org/apache/karaf/examples/jpa/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-command/src/main/java/org/apache/karaf/examples/jpa/command/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-command/src/main/java/org/apache/karaf/examples/jpa/command/AddCommand.java java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-command/src/main/java/org/apache/karaf/examples/jpa/command/GetCommand.java java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-command/src/main/java/org/apache/karaf/examples/jpa/command/ListCommand.java java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-command/src/main/java/org/apache/karaf/examples/jpa/command/RemoveCommand.java java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-command/src/main/java/org/apache/karaf/examples/jpa/completers/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-command/src/main/java/org/apache/karaf/examples/jpa/completers/BookingIdCompleter.java java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-command/pom.xml java/cytoscape/framework/examples/karaf-jpa-example/README.md java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-features/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-features/src/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-features/src/main/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-features/src/main/feature/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-features/src/main/feature/feature.xml java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-features/pom.xml java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-api/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-api/src/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-api/src/main/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-api/src/main/java/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-api/src/main/java/org/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-api/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-api/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-api/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-api/src/main/java/org/apache/karaf/examples/jpa/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-api/src/main/java/org/apache/karaf/examples/jpa/Booking.java java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-api/src/main/java/org/apache/karaf/examples/jpa/BookingService.java java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-api/pom.xml java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-eclipselink/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-eclipselink/src/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-eclipselink/src/main/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-eclipselink/src/main/java/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-eclipselink/src/main/java/org/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-eclipselink/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-eclipselink/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-eclipselink/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-eclipselink/src/main/java/org/apache/karaf/examples/jpa/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-eclipselink/src/main/java/org/apache/karaf/examples/jpa/provider/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-eclipselink/src/main/java/org/apache/karaf/examples/jpa/provider/blueprint/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-eclipselink/src/main/java/org/apache/karaf/examples/jpa/provider/blueprint/eclipselink/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-eclipselink/src/main/java/org/apache/karaf/examples/jpa/provider/blueprint/eclipselink/BookingServiceImpl.java java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-eclipselink/src/main/resources/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-eclipselink/src/main/resources/META-INF/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-eclipselink/src/main/resources/META-INF/persistence.xml java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-eclipselink/src/main/resources/OSGI-INF/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-eclipselink/src/main/resources/OSGI-INF/blueprint/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-eclipselink/src/main/resources/OSGI-INF/blueprint/blueprint.xml java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-eclipselink/pom.xml java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-hibernate/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-hibernate/src/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-hibernate/src/main/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-hibernate/src/main/java/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-hibernate/src/main/java/org/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-hibernate/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-hibernate/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-hibernate/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-hibernate/src/main/java/org/apache/karaf/examples/jpa/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-hibernate/src/main/java/org/apache/karaf/examples/jpa/provider/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-hibernate/src/main/java/org/apache/karaf/examples/jpa/provider/blueprint/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-hibernate/src/main/java/org/apache/karaf/examples/jpa/provider/blueprint/hibernate/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-hibernate/src/main/java/org/apache/karaf/examples/jpa/provider/blueprint/hibernate/BookingServiceImpl.java java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-hibernate/src/main/resources/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-hibernate/src/main/resources/META-INF/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-hibernate/src/main/resources/META-INF/persistence.xml java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-hibernate/src/main/resources/OSGI-INF/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-hibernate/src/main/resources/OSGI-INF/blueprint/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-hibernate/src/main/resources/OSGI-INF/blueprint/blueprint.xml java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-hibernate/pom.xml java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-openjpa/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-openjpa/src/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-openjpa/src/main/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-openjpa/src/main/java/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-openjpa/src/main/java/org/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-openjpa/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-openjpa/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-openjpa/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-openjpa/src/main/java/org/apache/karaf/examples/jpa/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-openjpa/src/main/java/org/apache/karaf/examples/jpa/provider/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-openjpa/src/main/java/org/apache/karaf/examples/jpa/provider/blueprint/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-openjpa/src/main/java/org/apache/karaf/examples/jpa/provider/blueprint/openjpa/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-openjpa/src/main/java/org/apache/karaf/examples/jpa/provider/blueprint/openjpa/BookingServiceImpl.java java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-openjpa/src/main/resources/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-openjpa/src/main/resources/META-INF/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-openjpa/src/main/resources/META-INF/persistence.xml java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-openjpa/src/main/resources/OSGI-INF/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-openjpa/src/main/resources/OSGI-INF/blueprint/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-openjpa/src/main/resources/OSGI-INF/blueprint/blueprint.xml java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/karaf-jpa-example-provider-blueprint-openjpa/pom.xml java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-blueprint/pom.xml java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-eclipselink/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-eclipselink/src/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-eclipselink/src/main/ 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java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-eclipselink/src/main/java/org/apache/karaf/examples/jpa/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-eclipselink/src/main/java/org/apache/karaf/examples/jpa/provider/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-eclipselink/src/main/java/org/apache/karaf/examples/jpa/provider/ds/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-eclipselink/src/main/java/org/apache/karaf/examples/jpa/provider/ds/eclipselink/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-eclipselink/src/main/java/org/apache/karaf/examples/jpa/provider/ds/eclipselink/BookingServiceImpl.java java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-eclipselink/src/main/resources/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-eclipselink/src/main/resources/META-INF/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-eclipselink/src/main/resources/META-INF/persistence.xml java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-eclipselink/pom.xml java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-hibernate/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-hibernate/src/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-hibernate/src/main/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-hibernate/src/main/java/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-hibernate/src/main/java/org/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-hibernate/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-hibernate/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-hibernate/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-hibernate/src/main/java/org/apache/karaf/examples/jpa/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-hibernate/src/main/java/org/apache/karaf/examples/jpa/provider/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-hibernate/src/main/java/org/apache/karaf/examples/jpa/provider/ds/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-hibernate/src/main/java/org/apache/karaf/examples/jpa/provider/ds/hibernate/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-hibernate/src/main/java/org/apache/karaf/examples/jpa/provider/ds/hibernate/BookingServiceImpl.java java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-hibernate/src/main/resources/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-hibernate/src/main/resources/META-INF/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-hibernate/src/main/resources/META-INF/persistence.xml java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-hibernate/pom.xml java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-openjpa/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-openjpa/src/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-openjpa/src/main/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-openjpa/src/main/java/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-openjpa/src/main/java/org/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-openjpa/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-openjpa/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-openjpa/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-openjpa/src/main/java/org/apache/karaf/examples/jpa/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-openjpa/src/main/java/org/apache/karaf/examples/jpa/provider/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-openjpa/src/main/java/org/apache/karaf/examples/jpa/provider/ds/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-openjpa/src/main/java/org/apache/karaf/examples/jpa/provider/ds/openjpa/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-openjpa/src/main/java/org/apache/karaf/examples/jpa/provider/ds/openjpa/BookingServiceImpl.java java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-openjpa/src/main/resources/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-openjpa/src/main/resources/META-INF/ java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-openjpa/src/main/resources/META-INF/persistence.xml java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/karaf-jpa-example-provider-ds-openjpa/pom.xml java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/karaf-jpa-example-provider-ds/pom.xml java/cytoscape/framework/examples/karaf-jpa-example/karaf-jpa-example-provider/pom.xml java/cytoscape/framework/examples/karaf-jpa-example/pom.xml java/cytoscape/framework/examples/karaf-log-appender-example/ java/cytoscape/framework/examples/karaf-log-appender-example/karaf-log-appender-example-core/ java/cytoscape/framework/examples/karaf-log-appender-example/karaf-log-appender-example-core/src/ java/cytoscape/framework/examples/karaf-log-appender-example/karaf-log-appender-example-core/src/main/ java/cytoscape/framework/examples/karaf-log-appender-example/karaf-log-appender-example-core/src/main/java/ java/cytoscape/framework/examples/karaf-log-appender-example/karaf-log-appender-example-core/src/main/java/org/ java/cytoscape/framework/examples/karaf-log-appender-example/karaf-log-appender-example-core/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-log-appender-example/karaf-log-appender-example-core/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-log-appender-example/karaf-log-appender-example-core/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-log-appender-example/karaf-log-appender-example-core/src/main/java/org/apache/karaf/examples/log/ java/cytoscape/framework/examples/karaf-log-appender-example/karaf-log-appender-example-core/src/main/java/org/apache/karaf/examples/log/ExampleLogAppender.java java/cytoscape/framework/examples/karaf-log-appender-example/karaf-log-appender-example-core/pom.xml java/cytoscape/framework/examples/karaf-log-appender-example/README.md java/cytoscape/framework/examples/karaf-log-appender-example/karaf-log-appender-example-features/ java/cytoscape/framework/examples/karaf-log-appender-example/karaf-log-appender-example-features/src/ java/cytoscape/framework/examples/karaf-log-appender-example/karaf-log-appender-example-features/src/main/ java/cytoscape/framework/examples/karaf-log-appender-example/karaf-log-appender-example-features/src/main/feature/ java/cytoscape/framework/examples/karaf-log-appender-example/karaf-log-appender-example-features/src/main/feature/feature.xml java/cytoscape/framework/examples/karaf-log-appender-example/karaf-log-appender-example-features/pom.xml java/cytoscape/framework/examples/karaf-log-appender-example/pom.xml java/cytoscape/framework/examples/karaf-maven-example/ java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-assembly/ java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-assembly/pom.xml java/cytoscape/framework/examples/karaf-maven-example/README.md java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-client/ java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-client/pom.xml java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-deploy/ java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-deploy/src/ java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-deploy/src/main/ java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-deploy/src/main/java/ java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-deploy/src/main/java/org/ java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-deploy/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-deploy/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-deploy/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-deploy/src/main/java/org/apache/karaf/examples/maven/ java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-deploy/src/main/java/org/apache/karaf/examples/maven/Activator.java java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-deploy/pom.xml java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-kar/ java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-kar/src/ java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-kar/src/main/ java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-kar/src/main/feature/ java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-kar/src/main/feature/features-repo.xml java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-kar/pom.xml java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-run-bundle/ java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-run-bundle/src/ java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-run-bundle/src/main/ java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-run-bundle/src/main/java/ java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-run-bundle/src/main/java/org/ java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-run-bundle/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-run-bundle/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-run-bundle/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-run-bundle/src/main/java/org/apache/karaf/examples/maven/ java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-run-bundle/src/main/java/org/apache/karaf/examples/maven/Activator.java java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-run-bundle/pom.xml java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-run/ java/cytoscape/framework/examples/karaf-maven-example/karaf-maven-example-run/pom.xml java/cytoscape/framework/examples/karaf-maven-example/pom.xml java/cytoscape/framework/examples/karaf-mbean-example/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-api/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-api/src/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-api/src/main/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-api/src/main/java/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-api/src/main/java/org/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-api/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-api/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-api/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-api/src/main/java/org/apache/karaf/examples/mbean/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-api/src/main/java/org/apache/karaf/examples/mbean/api/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-api/src/main/java/org/apache/karaf/examples/mbean/api/Booking.java java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-api/src/main/java/org/apache/karaf/examples/mbean/api/BookingService.java java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-api/pom.xml java/cytoscape/framework/examples/karaf-mbean-example/README.md java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-blueprint/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-blueprint/src/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-blueprint/src/main/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-blueprint/src/main/java/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-blueprint/src/main/java/org/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-blueprint/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-blueprint/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-blueprint/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-blueprint/src/main/java/org/apache/karaf/examples/mbean/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-blueprint/src/main/java/org/apache/karaf/examples/mbean/blueprint/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-blueprint/src/main/java/org/apache/karaf/examples/mbean/blueprint/BookingMBean.java java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-blueprint/src/main/java/org/apache/karaf/examples/mbean/blueprint/BookingMBeanImpl.java java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-blueprint/src/main/resources/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-blueprint/src/main/resources/OSGI-INF/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-blueprint/src/main/resources/OSGI-INF/blueprint/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-blueprint/src/main/resources/OSGI-INF/blueprint/jmx.xml java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-blueprint/pom.xml java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-features/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-features/src/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-features/src/main/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-features/src/main/feature/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-features/src/main/feature/feature.xml java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-features/pom.xml java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-provider/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-provider/src/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-provider/src/main/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-provider/src/main/java/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-provider/src/main/java/org/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-provider/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-provider/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-provider/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-provider/src/main/java/org/apache/karaf/examples/mbean/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-provider/src/main/java/org/apache/karaf/examples/mbean/provider/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-provider/src/main/java/org/apache/karaf/examples/mbean/provider/Activator.java java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-provider/src/main/java/org/apache/karaf/examples/mbean/provider/BookingServiceMemoryImpl.java java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-provider/pom.xml java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-scr/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-scr/src/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-scr/src/main/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-scr/src/main/java/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-scr/src/main/java/org/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-scr/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-scr/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-scr/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-scr/src/main/java/org/apache/karaf/examples/mbean/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-scr/src/main/java/org/apache/karaf/examples/mbean/scr/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-scr/src/main/java/org/apache/karaf/examples/mbean/scr/BookingMBean.java java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-scr/src/main/java/org/apache/karaf/examples/mbean/scr/BookingMBeanImpl.java java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-scr/pom.xml java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-simple/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-simple/src/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-simple/src/main/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-simple/src/main/java/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-simple/src/main/java/org/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-simple/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-simple/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-simple/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-simple/src/main/java/org/apache/karaf/examples/mbean/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-simple/src/main/java/org/apache/karaf/examples/mbean/simple/ java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-simple/src/main/java/org/apache/karaf/examples/mbean/simple/Activator.java java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-simple/src/main/java/org/apache/karaf/examples/mbean/simple/BookingMBean.java java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-simple/src/main/java/org/apache/karaf/examples/mbean/simple/BookingMBeanImpl.java java/cytoscape/framework/examples/karaf-mbean-example/karaf-mbean-example-simple/pom.xml java/cytoscape/framework/examples/karaf-mbean-example/pom.xml java/cytoscape/framework/examples/karaf-profile-example/ java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-dynamic/ java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-dynamic/pom.xml java/cytoscape/framework/examples/karaf-profile-example/README.md java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/ java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/ java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/ java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/ java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/activemq/ java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/activemq/broker.profile/ java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/activemq/broker.profile/profile.cfg java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/activemq/client.profile/ java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/activemq/client.profile/profile.cfg java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/camel.profile/ java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/camel.profile/profile.cfg java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/default.profile/ java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/default.profile/jetty.xml java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/default.profile/org.ops4j.pax.web.cfg java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/default.profile/profile.cfg java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/default.profile/version.cfg java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/karaf.profile/ java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/karaf.profile/org.ops4j.pax.logging.cfg java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/karaf.profile/org.ops4j.pax.logging.cfg#static java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/karaf.profile/profile.cfg java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/loanbroker/ java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/loanbroker/bank1.profile/ java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/loanbroker/bank1.profile/bank1.xml java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/loanbroker/bank1.profile/profile.cfg java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/loanbroker/bank2.profile/ java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/loanbroker/bank2.profile/bank2.xml java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/loanbroker/bank2.profile/profile.cfg java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/loanbroker/bank3.profile/ java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/loanbroker/bank3.profile/bank3.xml java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/loanbroker/bank3.profile/profile.cfg java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/loanbroker/base.profile/ java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/loanbroker/base.profile/profile.cfg java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/loanbroker/broker.profile/ java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/loanbroker/broker.profile/loanBroker.xml java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/src/main/resources/loanbroker/broker.profile/profile.cfg java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-registry/pom.xml java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-static/ java/cytoscape/framework/examples/karaf-profile-example/karaf-profile-example-static/pom.xml java/cytoscape/framework/examples/karaf-profile-example/pom.xml java/cytoscape/framework/examples/karaf-rest-example/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-api/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-api/src/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-api/src/main/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-api/src/main/java/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-api/src/main/java/org/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-api/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-api/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-api/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-api/src/main/java/org/apache/karaf/examples/rest/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-api/src/main/java/org/apache/karaf/examples/rest/api/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-api/src/main/java/org/apache/karaf/examples/rest/api/Booking.java java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-api/src/main/java/org/apache/karaf/examples/rest/api/BookingService.java java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-api/pom.xml java/cytoscape/framework/examples/karaf-rest-example/README.md java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-blueprint/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-blueprint/src/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-blueprint/src/main/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-blueprint/src/main/java/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-blueprint/src/main/java/org/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-blueprint/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-blueprint/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-blueprint/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-blueprint/src/main/java/org/apache/karaf/examples/rest/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-blueprint/src/main/java/org/apache/karaf/examples/rest/blueprint/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-blueprint/src/main/java/org/apache/karaf/examples/rest/blueprint/BookingServiceRest.java java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-blueprint/src/main/resources/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-blueprint/src/main/resources/OSGI-INF/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-blueprint/src/main/resources/OSGI-INF/blueprint/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-blueprint/src/main/resources/OSGI-INF/blueprint/rest.xml java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-blueprint/pom.xml java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-client/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-client/karaf-rest-example-client-cxf/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-client/karaf-rest-example-client-cxf/src/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-client/karaf-rest-example-client-cxf/src/main/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-client/karaf-rest-example-client-cxf/src/main/java/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-client/karaf-rest-example-client-cxf/src/main/java/org/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-client/karaf-rest-example-client-cxf/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-client/karaf-rest-example-client-cxf/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-client/karaf-rest-example-client-cxf/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-client/karaf-rest-example-client-cxf/src/main/java/org/apache/karaf/examples/rest/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-client/karaf-rest-example-client-cxf/src/main/java/org/apache/karaf/examples/rest/client/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-client/karaf-rest-example-client-cxf/src/main/java/org/apache/karaf/examples/rest/client/cxf/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-client/karaf-rest-example-client-cxf/src/main/java/org/apache/karaf/examples/rest/client/cxf/AddBookingCommand.java java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-client/karaf-rest-example-client-cxf/src/main/java/org/apache/karaf/examples/rest/client/cxf/ListBookingCommand.java java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-client/karaf-rest-example-client-cxf/pom.xml java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-client/karaf-rest-example-client-http/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-client/karaf-rest-example-client-http/src/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-client/karaf-rest-example-client-http/src/main/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-client/karaf-rest-example-client-http/src/main/java/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-client/karaf-rest-example-client-http/src/main/java/org/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-client/karaf-rest-example-client-http/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-client/karaf-rest-example-client-http/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-client/karaf-rest-example-client-http/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-client/karaf-rest-example-client-http/src/main/java/org/apache/karaf/examples/rest/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-client/karaf-rest-example-client-http/src/main/java/org/apache/karaf/examples/rest/client/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-client/karaf-rest-example-client-http/src/main/java/org/apache/karaf/examples/rest/client/http/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-client/karaf-rest-example-client-http/src/main/java/org/apache/karaf/examples/rest/client/http/AddBookingCommand.java java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-client/karaf-rest-example-client-http/src/main/java/org/apache/karaf/examples/rest/client/http/ListBookingCommand.java java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-client/karaf-rest-example-client-http/pom.xml java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-client/pom.xml java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-features/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-features/src/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-features/src/main/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-features/src/main/feature/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-features/src/main/feature/feature.xml java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-features/pom.xml java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-scr/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-scr/src/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-scr/src/main/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-scr/src/main/java/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-scr/src/main/java/org/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-scr/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-scr/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-scr/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-scr/src/main/java/org/apache/karaf/examples/rest/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-scr/src/main/java/org/apache/karaf/examples/rest/scr/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-scr/src/main/java/org/apache/karaf/examples/rest/scr/BookingServiceRest.java java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-scr/src/main/java/org/apache/karaf/examples/rest/scr/RestService.java java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-scr/pom.xml java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-whiteboard/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-whiteboard/src/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-whiteboard/src/main/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-whiteboard/src/main/java/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-whiteboard/src/main/java/org/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-whiteboard/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-whiteboard/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-whiteboard/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-whiteboard/src/main/java/org/apache/karaf/examples/rest/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-whiteboard/src/main/java/org/apache/karaf/examples/rest/whiteboard/ java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-whiteboard/src/main/java/org/apache/karaf/examples/rest/whiteboard/BookingServiceRest.java java/cytoscape/framework/examples/karaf-rest-example/karaf-rest-example-whiteboard/pom.xml java/cytoscape/framework/examples/karaf-rest-example/pom.xml java/cytoscape/framework/examples/karaf-scheduler-example/ java/cytoscape/framework/examples/karaf-scheduler-example/karaf-scheduler-example-features/ java/cytoscape/framework/examples/karaf-scheduler-example/karaf-scheduler-example-features/src/ java/cytoscape/framework/examples/karaf-scheduler-example/karaf-scheduler-example-features/src/main/ java/cytoscape/framework/examples/karaf-scheduler-example/karaf-scheduler-example-features/src/main/feature/ java/cytoscape/framework/examples/karaf-scheduler-example/karaf-scheduler-example-features/src/main/feature/feature.xml java/cytoscape/framework/examples/karaf-scheduler-example/karaf-scheduler-example-features/pom.xml java/cytoscape/framework/examples/karaf-scheduler-example/README.md java/cytoscape/framework/examples/karaf-scheduler-example/karaf-scheduler-example-runnable/ java/cytoscape/framework/examples/karaf-scheduler-example/karaf-scheduler-example-runnable/src/ java/cytoscape/framework/examples/karaf-scheduler-example/karaf-scheduler-example-runnable/src/main/ java/cytoscape/framework/examples/karaf-scheduler-example/karaf-scheduler-example-runnable/src/main/java/ java/cytoscape/framework/examples/karaf-scheduler-example/karaf-scheduler-example-runnable/src/main/java/org/ java/cytoscape/framework/examples/karaf-scheduler-example/karaf-scheduler-example-runnable/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-scheduler-example/karaf-scheduler-example-runnable/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-scheduler-example/karaf-scheduler-example-runnable/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-scheduler-example/karaf-scheduler-example-runnable/src/main/java/org/apache/karaf/examples/scheduler/ java/cytoscape/framework/examples/karaf-scheduler-example/karaf-scheduler-example-runnable/src/main/java/org/apache/karaf/examples/scheduler/RunnableService.java java/cytoscape/framework/examples/karaf-scheduler-example/karaf-scheduler-example-runnable/pom.xml java/cytoscape/framework/examples/karaf-scheduler-example/pom.xml java/cytoscape/framework/examples/karaf-scr-example/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-api/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-api/src/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-api/src/main/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-api/src/main/java/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-api/src/main/java/org/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-api/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-api/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-api/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-api/src/main/java/org/apache/karaf/examples/scr/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-api/src/main/java/org/apache/karaf/examples/scr/api/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-api/src/main/java/org/apache/karaf/examples/scr/api/Booking.java java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-api/src/main/java/org/apache/karaf/examples/scr/api/BookingService.java java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-api/pom.xml java/cytoscape/framework/examples/karaf-scr-example/README.md java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-client/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-client/src/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-client/src/main/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-client/src/main/java/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-client/src/main/java/org/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-client/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-client/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-client/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-client/src/main/java/org/apache/karaf/examples/scr/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-client/src/main/java/org/apache/karaf/examples/scr/client/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-client/src/main/java/org/apache/karaf/examples/scr/client/ConsoleClient.java java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-client/pom.xml java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-features/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-features/src/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-features/src/main/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-features/src/main/feature/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-features/src/main/feature/feature.xml java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-features/pom.xml java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-provider/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-provider/src/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-provider/src/main/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-provider/src/main/java/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-provider/src/main/java/org/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-provider/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-provider/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-provider/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-provider/src/main/java/org/apache/karaf/examples/scr/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-provider/src/main/java/org/apache/karaf/examples/scr/provider/ java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-provider/src/main/java/org/apache/karaf/examples/scr/provider/BookingServiceMemoryImpl.java java/cytoscape/framework/examples/karaf-scr-example/karaf-scr-example-provider/pom.xml java/cytoscape/framework/examples/karaf-scr-example/pom.xml java/cytoscape/framework/examples/karaf-servlet-example/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-annotation/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-annotation/src/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-annotation/src/main/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-annotation/src/main/java/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-annotation/src/main/java/org/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-annotation/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-annotation/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-annotation/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-annotation/src/main/java/org/apache/karaf/examples/servlet/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-annotation/src/main/java/org/apache/karaf/examples/servlet/annotation/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-annotation/src/main/java/org/apache/karaf/examples/servlet/annotation/ExampleServlet.java java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-annotation/src/main/webapp/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-annotation/src/main/webapp/WEB-INF/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-annotation/src/main/webapp/WEB-INF/web.xml java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-annotation/pom.xml java/cytoscape/framework/examples/karaf-servlet-example/README.md java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-blueprint/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-blueprint/src/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-blueprint/src/main/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-blueprint/src/main/java/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-blueprint/src/main/java/org/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-blueprint/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-blueprint/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-blueprint/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-blueprint/src/main/java/org/apache/karaf/examples/servlet/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-blueprint/src/main/java/org/apache/karaf/examples/servlet/blueprint/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-blueprint/src/main/java/org/apache/karaf/examples/servlet/blueprint/ExampleServlet.java java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-blueprint/src/main/resources/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-blueprint/src/main/resources/OSGI-INF/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-blueprint/src/main/resources/OSGI-INF/blueprint/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-blueprint/src/main/resources/OSGI-INF/blueprint/servlet.xml java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-blueprint/pom.xml java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-features/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-features/src/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-features/src/main/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-features/src/main/feature/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-features/src/main/feature/feature.xml java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-features/pom.xml java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-registration/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-registration/src/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-registration/src/main/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-registration/src/main/java/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-registration/src/main/java/org/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-registration/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-registration/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-registration/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-registration/src/main/java/org/apache/karaf/examples/servlet/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-registration/src/main/java/org/apache/karaf/examples/servlet/registration/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-registration/src/main/java/org/apache/karaf/examples/servlet/registration/Activator.java java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-registration/src/main/java/org/apache/karaf/examples/servlet/registration/ExampleServlet.java java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-registration/pom.xml java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-scr/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-scr/src/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-scr/src/main/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-scr/src/main/java/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-scr/src/main/java/org/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-scr/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-scr/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-scr/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-scr/src/main/java/org/apache/karaf/examples/servlet/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-scr/src/main/java/org/apache/karaf/examples/servlet/scr/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-scr/src/main/java/org/apache/karaf/examples/servlet/scr/ExampleServlet.java java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-scr/pom.xml java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-upload/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-upload/src/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-upload/src/main/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-upload/src/main/java/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-upload/src/main/java/org/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-upload/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-upload/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-upload/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-upload/src/main/java/org/apache/karaf/examples/servlet/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-upload/src/main/java/org/apache/karaf/examples/servlet/upload/ java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-upload/src/main/java/org/apache/karaf/examples/servlet/upload/Component.java java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-upload/src/main/java/org/apache/karaf/examples/servlet/upload/UploadServlet.java java/cytoscape/framework/examples/karaf-servlet-example/karaf-servlet-example-upload/pom.xml java/cytoscape/framework/examples/karaf-servlet-example/pom.xml java/cytoscape/framework/examples/karaf-soap-example/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-api/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-api/src/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-api/src/main/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-api/src/main/java/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-api/src/main/java/org/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-api/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-api/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-api/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-api/src/main/java/org/apache/karaf/examples/soap/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-api/src/main/java/org/apache/karaf/examples/soap/api/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-api/src/main/java/org/apache/karaf/examples/soap/api/Booking.java java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-api/src/main/java/org/apache/karaf/examples/soap/api/BookingService.java java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-api/pom.xml java/cytoscape/framework/examples/karaf-soap-example/README.md java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-blueprint/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-blueprint/src/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-blueprint/src/main/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-blueprint/src/main/java/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-blueprint/src/main/java/org/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-blueprint/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-blueprint/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-blueprint/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-blueprint/src/main/java/org/apache/karaf/examples/soap/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-blueprint/src/main/java/org/apache/karaf/examples/soap/blueprint/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-blueprint/src/main/java/org/apache/karaf/examples/soap/blueprint/BookingServiceSoap.java java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-blueprint/src/main/java/org/apache/karaf/examples/soap/blueprint/BookingServiceSoapImpl.java java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-blueprint/src/main/resources/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-blueprint/src/main/resources/OSGI-INF/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-blueprint/src/main/resources/OSGI-INF/blueprint/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-blueprint/src/main/resources/OSGI-INF/blueprint/soap.xml java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-blueprint/pom.xml java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-client/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-client/src/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-client/src/main/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-client/src/main/java/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-client/src/main/java/org/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-client/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-client/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-client/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-client/src/main/java/org/apache/karaf/examples/soap/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-client/src/main/java/org/apache/karaf/examples/soap/client/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-client/src/main/java/org/apache/karaf/examples/soap/client/AddCommand.java java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-client/src/main/java/org/apache/karaf/examples/soap/client/CxfClient.java java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-client/src/main/java/org/apache/karaf/examples/soap/client/ListCommand.java java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-client/pom.xml java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-features/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-features/src/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-features/src/main/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-features/src/main/feature/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-features/src/main/feature/feature.xml java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-features/pom.xml java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-scr/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-scr/src/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-scr/src/main/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-scr/src/main/java/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-scr/src/main/java/org/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-scr/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-scr/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-scr/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-scr/src/main/java/org/apache/karaf/examples/soap/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-scr/src/main/java/org/apache/karaf/examples/soap/scr/ java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-scr/src/main/java/org/apache/karaf/examples/soap/scr/BookingServiceSoap.java java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-scr/src/main/java/org/apache/karaf/examples/soap/scr/BookingServiceSoapImpl.java java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-scr/src/main/java/org/apache/karaf/examples/soap/scr/SoapService.java java/cytoscape/framework/examples/karaf-soap-example/karaf-soap-example-scr/pom.xml java/cytoscape/framework/examples/karaf-soap-example/pom.xml java/cytoscape/framework/examples/karaf-url-namespace-handler-example/ java/cytoscape/framework/examples/karaf-url-namespace-handler-example/README.md java/cytoscape/framework/examples/karaf-url-namespace-handler-example/karaf-url-namespace-handler-example-core/ java/cytoscape/framework/examples/karaf-url-namespace-handler-example/karaf-url-namespace-handler-example-core/src/ java/cytoscape/framework/examples/karaf-url-namespace-handler-example/karaf-url-namespace-handler-example-core/src/main/ java/cytoscape/framework/examples/karaf-url-namespace-handler-example/karaf-url-namespace-handler-example-core/src/main/java/ java/cytoscape/framework/examples/karaf-url-namespace-handler-example/karaf-url-namespace-handler-example-core/src/main/java/org/ java/cytoscape/framework/examples/karaf-url-namespace-handler-example/karaf-url-namespace-handler-example-core/src/main/java/org/apache/ java/cytoscape/framework/examples/karaf-url-namespace-handler-example/karaf-url-namespace-handler-example-core/src/main/java/org/apache/karaf/ java/cytoscape/framework/examples/karaf-url-namespace-handler-example/karaf-url-namespace-handler-example-core/src/main/java/org/apache/karaf/examples/ java/cytoscape/framework/examples/karaf-url-namespace-handler-example/karaf-url-namespace-handler-example-core/src/main/java/org/apache/karaf/examples/url/ java/cytoscape/framework/examples/karaf-url-namespace-handler-example/karaf-url-namespace-handler-example-core/src/main/java/org/apache/karaf/examples/url/ExampleUrlHandler.java java/cytoscape/framework/examples/karaf-url-namespace-handler-example/karaf-url-namespace-handler-example-core/pom.xml java/cytoscape/framework/examples/karaf-url-namespace-handler-example/karaf-url-namespace-handler-example-features/ java/cytoscape/framework/examples/karaf-url-namespace-handler-example/karaf-url-namespace-handler-example-features/src/ java/cytoscape/framework/examples/karaf-url-namespace-handler-example/karaf-url-namespace-handler-example-features/src/main/ java/cytoscape/framework/examples/karaf-url-namespace-handler-example/karaf-url-namespace-handler-example-features/src/main/feature/ java/cytoscape/framework/examples/karaf-url-namespace-handler-example/karaf-url-namespace-handler-example-features/src/main/feature/feature.xml java/cytoscape/framework/examples/karaf-url-namespace-handler-example/karaf-url-namespace-handler-example-features/pom.xml java/cytoscape/framework/examples/karaf-url-namespace-handler-example/pom.xml java/cytoscape/framework/examples/karaf-war-example/ java/cytoscape/framework/examples/karaf-war-example/karaf-war-example-features/ java/cytoscape/framework/examples/karaf-war-example/karaf-war-example-features/src/ java/cytoscape/framework/examples/karaf-war-example/karaf-war-example-features/src/main/ java/cytoscape/framework/examples/karaf-war-example/karaf-war-example-features/src/main/feature/ java/cytoscape/framework/examples/karaf-war-example/karaf-war-example-features/src/main/feature/feature.xml java/cytoscape/framework/examples/karaf-war-example/karaf-war-example-features/pom.xml java/cytoscape/framework/examples/karaf-war-example/README.md java/cytoscape/framework/examples/karaf-war-example/karaf-war-example-webapp/ java/cytoscape/framework/examples/karaf-war-example/karaf-war-example-webapp/src/ java/cytoscape/framework/examples/karaf-war-example/karaf-war-example-webapp/src/main/ java/cytoscape/framework/examples/karaf-war-example/karaf-war-example-webapp/src/main/webapp/ java/cytoscape/framework/examples/karaf-war-example/karaf-war-example-webapp/src/main/webapp/WEB-INF/ java/cytoscape/framework/examples/karaf-war-example/karaf-war-example-webapp/src/main/webapp/WEB-INF/web.xml java/cytoscape/framework/examples/karaf-war-example/karaf-war-example-webapp/src/main/webapp/index.jsp java/cytoscape/framework/examples/karaf-war-example/karaf-war-example-webapp/pom.xml java/cytoscape/framework/examples/karaf-war-example/pom.xml java/cytoscape/framework/examples/karaf-websocket-example/ java/cytoscape/framework/examples/karaf-websocket-example/src/ 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java/cytoscape/framework/examples/pom.xml java/cytoscape/framework/lib/ java/cytoscape/framework/lib/boot/ java/cytoscape/framework/lib/boot/README java/cytoscape/framework/lib/boot/branding-3.9.1.jar java/cytoscape/framework/lib/boot/karaf-launcher-3.9.1.jar java/cytoscape/framework/lib/boot/opendmk_jmxremote_optional_jar-1.0-b01-ea.jar java/cytoscape/framework/lib/boot/org.apache.karaf.diagnostic.boot-4.2.8.jar java/cytoscape/framework/lib/boot/org.apache.karaf.jaas.boot-4.2.8.jar java/cytoscape/framework/lib/boot/org.apache.karaf.main-4.2.8.jar java/cytoscape/framework/lib/boot/org.apache.karaf.specs.activator-4.2.8.jar java/cytoscape/framework/lib/boot/osgi.core-6.0.0.jar java/cytoscape/framework/lib/README java/cytoscape/framework/lib/endorsed/ java/cytoscape/framework/lib/endorsed/README java/cytoscape/framework/lib/endorsed/org.apache.karaf.specs.java.xml-4.2.8.jar java/cytoscape/framework/lib/endorsed/org.apache.karaf.specs.java.xml.ws-4.2.8.jar 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java/cytoscape/framework/system/org/apache/aries/blueprint/org.apache.aries.blueprint.cm/1.3.1/org.apache.aries.blueprint.cm-1.3.1.jar java/cytoscape/framework/system/org/apache/aries/blueprint/org.apache.aries.blueprint.core.compatibility/ java/cytoscape/framework/system/org/apache/aries/blueprint/org.apache.aries.blueprint.core.compatibility/1.0.0/ java/cytoscape/framework/system/org/apache/aries/blueprint/org.apache.aries.blueprint.core.compatibility/1.0.0/org.apache.aries.blueprint.core.compatibility-1.0.0.jar java/cytoscape/framework/system/org/apache/aries/blueprint/org.apache.aries.blueprint.core/ java/cytoscape/framework/system/org/apache/aries/blueprint/org.apache.aries.blueprint.core/1.10.2/ java/cytoscape/framework/system/org/apache/aries/blueprint/org.apache.aries.blueprint.core/1.10.2/org.apache.aries.blueprint.core-1.10.2.jar java/cytoscape/framework/system/org/apache/aries/jmx/ java/cytoscape/framework/system/org/apache/aries/jmx/org.apache.aries.jmx.api/ java/cytoscape/framework/system/org/apache/aries/jmx/org.apache.aries.jmx.api/1.1.5/ java/cytoscape/framework/system/org/apache/aries/jmx/org.apache.aries.jmx.api/1.1.5/org.apache.aries.jmx.api-1.1.5.jar java/cytoscape/framework/system/org/apache/aries/jmx/org.apache.aries.jmx.blueprint.api/ java/cytoscape/framework/system/org/apache/aries/jmx/org.apache.aries.jmx.blueprint.api/1.2.0/ java/cytoscape/framework/system/org/apache/aries/jmx/org.apache.aries.jmx.blueprint.api/1.2.0/org.apache.aries.jmx.blueprint.api-1.2.0.jar java/cytoscape/framework/system/org/apache/aries/jmx/org.apache.aries.jmx.blueprint.core/ java/cytoscape/framework/system/org/apache/aries/jmx/org.apache.aries.jmx.blueprint.core/1.2.0/ java/cytoscape/framework/system/org/apache/aries/jmx/org.apache.aries.jmx.blueprint.core/1.2.0/org.apache.aries.jmx.blueprint.core-1.2.0.jar java/cytoscape/framework/system/org/apache/aries/jmx/org.apache.aries.jmx.core/ java/cytoscape/framework/system/org/apache/aries/jmx/org.apache.aries.jmx.core/1.1.8/ java/cytoscape/framework/system/org/apache/aries/jmx/org.apache.aries.jmx.core/1.1.8/org.apache.aries.jmx.core-1.1.8.jar java/cytoscape/framework/system/org/apache/aries/jmx/org.apache.aries.jmx.whiteboard/ java/cytoscape/framework/system/org/apache/aries/jmx/org.apache.aries.jmx.whiteboard/1.2.0/ java/cytoscape/framework/system/org/apache/aries/jmx/org.apache.aries.jmx.whiteboard/1.2.0/org.apache.aries.jmx.whiteboard-1.2.0.jar java/cytoscape/framework/system/org/apache/aries/jpa/ java/cytoscape/framework/system/org/apache/aries/jpa/jpa-features/ java/cytoscape/framework/system/org/apache/aries/jpa/jpa-features/2.7.2/ java/cytoscape/framework/system/org/apache/aries/jpa/jpa-features/2.7.2/jpa-features-2.7.2-features.xml java/cytoscape/framework/system/org/apache/aries/org.apache.aries.util/ java/cytoscape/framework/system/org/apache/aries/org.apache.aries.util/1.1.3/ java/cytoscape/framework/system/org/apache/aries/org.apache.aries.util/1.1.3/org.apache.aries.util-1.1.3.jar java/cytoscape/framework/system/org/apache/aries/proxy/ java/cytoscape/framework/system/org/apache/aries/proxy/org.apache.aries.proxy/ java/cytoscape/framework/system/org/apache/aries/proxy/org.apache.aries.proxy/1.1.6/ java/cytoscape/framework/system/org/apache/aries/proxy/org.apache.aries.proxy/1.1.6/org.apache.aries.proxy-1.1.6.jar java/cytoscape/framework/system/org/apache/aries/spifly/ java/cytoscape/framework/system/org/apache/aries/spifly/org.apache.aries.spifly.dynamic.bundle/ java/cytoscape/framework/system/org/apache/aries/spifly/org.apache.aries.spifly.dynamic.bundle/1.2.3/ java/cytoscape/framework/system/org/apache/aries/spifly/org.apache.aries.spifly.dynamic.bundle/1.2.3/org.apache.aries.spifly.dynamic.bundle-1.2.3.jar java/cytoscape/framework/system/org/apache/felix/ java/cytoscape/framework/system/org/apache/felix/org.apache.felix.configadmin/ java/cytoscape/framework/system/org/apache/felix/org.apache.felix.configadmin/1.9.16/ java/cytoscape/framework/system/org/apache/felix/org.apache.felix.configadmin/1.9.16/org.apache.felix.configadmin-1.9.16.jar java/cytoscape/framework/system/org/apache/felix/org.apache.felix.coordinator/ java/cytoscape/framework/system/org/apache/felix/org.apache.felix.coordinator/1.0.2/ java/cytoscape/framework/system/org/apache/felix/org.apache.felix.coordinator/1.0.2/org.apache.felix.coordinator-1.0.2.jar java/cytoscape/framework/system/org/apache/felix/org.apache.felix.fileinstall/ java/cytoscape/framework/system/org/apache/felix/org.apache.felix.fileinstall/3.6.4/ java/cytoscape/framework/system/org/apache/felix/org.apache.felix.fileinstall/3.6.4/org.apache.felix.fileinstall-3.6.4.jar java/cytoscape/framework/system/org/apache/felix/org.apache.felix.framework/ java/cytoscape/framework/system/org/apache/felix/org.apache.felix.framework/5.6.12/ java/cytoscape/framework/system/org/apache/felix/org.apache.felix.framework/5.6.12/org.apache.felix.framework-5.6.12.jar java/cytoscape/framework/system/org/apache/felix/org.apache.felix.inventory/ java/cytoscape/framework/system/org/apache/felix/org.apache.felix.inventory/1.0.6/ java/cytoscape/framework/system/org/apache/felix/org.apache.felix.inventory/1.0.6/org.apache.felix.inventory-1.0.6.jar java/cytoscape/framework/system/org/apache/felix/org.apache.felix.metatype/ java/cytoscape/framework/system/org/apache/felix/org.apache.felix.metatype/1.2.2/ java/cytoscape/framework/system/org/apache/felix/org.apache.felix.metatype/1.2.2/org.apache.felix.metatype-1.2.2.jar java/cytoscape/framework/system/org/apache/felix/org.apache.felix.scr/ java/cytoscape/framework/system/org/apache/felix/org.apache.felix.scr/2.1.16/ java/cytoscape/framework/system/org/apache/felix/org.apache.felix.scr/2.1.16/org.apache.felix.scr-2.1.16.jar java/cytoscape/framework/system/org/apache/felix/org.apache.felix.webconsole.plugins.ds/ java/cytoscape/framework/system/org/apache/felix/org.apache.felix.webconsole.plugins.ds/2.1.0/ java/cytoscape/framework/system/org/apache/felix/org.apache.felix.webconsole.plugins.ds/2.1.0/org.apache.felix.webconsole.plugins.ds-2.1.0.jar java/cytoscape/framework/system/org/apache/felix/org.apache.felix.webconsole.plugins.event/ java/cytoscape/framework/system/org/apache/felix/org.apache.felix.webconsole.plugins.event/1.1.8/ java/cytoscape/framework/system/org/apache/felix/org.apache.felix.webconsole.plugins.event/1.1.8/org.apache.felix.webconsole.plugins.event-1.1.8.jar java/cytoscape/framework/system/org/apache/geronimo/ java/cytoscape/framework/system/org/apache/geronimo/specs/ java/cytoscape/framework/system/org/apache/geronimo/specs/geronimo-annotation_1.1_spec/ java/cytoscape/framework/system/org/apache/geronimo/specs/geronimo-annotation_1.1_spec/1.0.1/ java/cytoscape/framework/system/org/apache/geronimo/specs/geronimo-annotation_1.1_spec/1.0.1/geronimo-annotation_1.1_spec-1.0.1.jar java/cytoscape/framework/system/org/apache/geronimo/specs/geronimo-jaspic_1.0_spec/ java/cytoscape/framework/system/org/apache/geronimo/specs/geronimo-jaspic_1.0_spec/1.1/ java/cytoscape/framework/system/org/apache/geronimo/specs/geronimo-jaspic_1.0_spec/1.1/geronimo-jaspic_1.0_spec-1.1.jar java/cytoscape/framework/system/org/apache/geronimo/specs/geronimo-jta_1.1_spec/ java/cytoscape/framework/system/org/apache/geronimo/specs/geronimo-jta_1.1_spec/1.1.1/ java/cytoscape/framework/system/org/apache/geronimo/specs/geronimo-jta_1.1_spec/1.1.1/geronimo-jta_1.1_spec-1.1.1.jar java/cytoscape/framework/system/org/apache/karaf/ java/cytoscape/framework/system/org/apache/karaf/bundle/ java/cytoscape/framework/system/org/apache/karaf/bundle/org.apache.karaf.bundle.blueprintstate/ java/cytoscape/framework/system/org/apache/karaf/bundle/org.apache.karaf.bundle.blueprintstate/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/bundle/org.apache.karaf.bundle.blueprintstate/4.2.8/org.apache.karaf.bundle.blueprintstate-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/bundle/org.apache.karaf.bundle.core/ java/cytoscape/framework/system/org/apache/karaf/bundle/org.apache.karaf.bundle.core/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/bundle/org.apache.karaf.bundle.core/4.2.8/org.apache.karaf.bundle.core-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/config/ java/cytoscape/framework/system/org/apache/karaf/config/org.apache.karaf.config.core/ java/cytoscape/framework/system/org/apache/karaf/config/org.apache.karaf.config.core/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/config/org.apache.karaf.config.core/4.2.8/org.apache.karaf.config.core-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/deployer/ java/cytoscape/framework/system/org/apache/karaf/deployer/org.apache.karaf.deployer.blueprint/ java/cytoscape/framework/system/org/apache/karaf/deployer/org.apache.karaf.deployer.blueprint/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/deployer/org.apache.karaf.deployer.blueprint/4.2.8/org.apache.karaf.deployer.blueprint-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/deployer/org.apache.karaf.deployer.features/ java/cytoscape/framework/system/org/apache/karaf/deployer/org.apache.karaf.deployer.features/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/deployer/org.apache.karaf.deployer.features/4.2.8/org.apache.karaf.deployer.features-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/deployer/org.apache.karaf.deployer.kar/ java/cytoscape/framework/system/org/apache/karaf/deployer/org.apache.karaf.deployer.kar/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/deployer/org.apache.karaf.deployer.kar/4.2.8/org.apache.karaf.deployer.kar-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/deployer/org.apache.karaf.deployer.wrap/ java/cytoscape/framework/system/org/apache/karaf/deployer/org.apache.karaf.deployer.wrap/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/deployer/org.apache.karaf.deployer.wrap/4.2.8/org.apache.karaf.deployer.wrap-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/diagnostic/ java/cytoscape/framework/system/org/apache/karaf/diagnostic/org.apache.karaf.diagnostic.boot/ java/cytoscape/framework/system/org/apache/karaf/diagnostic/org.apache.karaf.diagnostic.boot/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/diagnostic/org.apache.karaf.diagnostic.boot/4.2.8/org.apache.karaf.diagnostic.boot-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/diagnostic/org.apache.karaf.diagnostic.core/ java/cytoscape/framework/system/org/apache/karaf/diagnostic/org.apache.karaf.diagnostic.core/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/diagnostic/org.apache.karaf.diagnostic.core/4.2.8/org.apache.karaf.diagnostic.core-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/features/ java/cytoscape/framework/system/org/apache/karaf/features/enterprise/ java/cytoscape/framework/system/org/apache/karaf/features/enterprise/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/features/enterprise/4.2.8/enterprise-4.2.8-features.xml java/cytoscape/framework/system/org/apache/karaf/features/framework/ java/cytoscape/framework/system/org/apache/karaf/features/framework/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/features/framework/4.2.8/framework-4.2.8-features.xml java/cytoscape/framework/system/org/apache/karaf/features/org.apache.karaf.features.command/ java/cytoscape/framework/system/org/apache/karaf/features/org.apache.karaf.features.command/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/features/org.apache.karaf.features.command/4.2.8/org.apache.karaf.features.command-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/features/org.apache.karaf.features.core/ java/cytoscape/framework/system/org/apache/karaf/features/org.apache.karaf.features.core/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/features/org.apache.karaf.features.core/4.2.8/org.apache.karaf.features.core-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/features/org.apache.karaf.features.extension/ java/cytoscape/framework/system/org/apache/karaf/features/org.apache.karaf.features.extension/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/features/org.apache.karaf.features.extension/4.2.8/org.apache.karaf.features.extension-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/features/spring/ java/cytoscape/framework/system/org/apache/karaf/features/spring/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/features/spring/4.2.8/spring-4.2.8-features.xml java/cytoscape/framework/system/org/apache/karaf/features/standard/ java/cytoscape/framework/system/org/apache/karaf/features/standard/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/features/standard/4.2.8/standard-4.2.8-features.xml java/cytoscape/framework/system/org/apache/karaf/http/ java/cytoscape/framework/system/org/apache/karaf/http/org.apache.karaf.http.core/ java/cytoscape/framework/system/org/apache/karaf/http/org.apache.karaf.http.core/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/http/org.apache.karaf.http.core/4.2.8/org.apache.karaf.http.core-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/instance/ java/cytoscape/framework/system/org/apache/karaf/instance/org.apache.karaf.instance.core/ java/cytoscape/framework/system/org/apache/karaf/instance/org.apache.karaf.instance.core/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/instance/org.apache.karaf.instance.core/4.2.8/org.apache.karaf.instance.core-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/jaas/ java/cytoscape/framework/system/org/apache/karaf/jaas/blueprint/ java/cytoscape/framework/system/org/apache/karaf/jaas/blueprint/org.apache.karaf.jaas.blueprint.config/ java/cytoscape/framework/system/org/apache/karaf/jaas/blueprint/org.apache.karaf.jaas.blueprint.config/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/jaas/blueprint/org.apache.karaf.jaas.blueprint.config/4.2.8/org.apache.karaf.jaas.blueprint.config-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/jaas/org.apache.karaf.jaas.boot/ java/cytoscape/framework/system/org/apache/karaf/jaas/org.apache.karaf.jaas.boot/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/jaas/org.apache.karaf.jaas.boot/4.2.8/org.apache.karaf.jaas.boot-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/jaas/org.apache.karaf.jaas.command/ java/cytoscape/framework/system/org/apache/karaf/jaas/org.apache.karaf.jaas.command/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/jaas/org.apache.karaf.jaas.command/4.2.8/org.apache.karaf.jaas.command-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/jaas/org.apache.karaf.jaas.config/ java/cytoscape/framework/system/org/apache/karaf/jaas/org.apache.karaf.jaas.config/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/jaas/org.apache.karaf.jaas.config/4.2.8/org.apache.karaf.jaas.config-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/jaas/org.apache.karaf.jaas.modules/ java/cytoscape/framework/system/org/apache/karaf/jaas/org.apache.karaf.jaas.modules/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/jaas/org.apache.karaf.jaas.modules/4.2.8/org.apache.karaf.jaas.modules-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/kar/ java/cytoscape/framework/system/org/apache/karaf/kar/org.apache.karaf.kar.core/ java/cytoscape/framework/system/org/apache/karaf/kar/org.apache.karaf.kar.core/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/kar/org.apache.karaf.kar.core/4.2.8/org.apache.karaf.kar.core-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/log/ java/cytoscape/framework/system/org/apache/karaf/log/org.apache.karaf.log.core/ java/cytoscape/framework/system/org/apache/karaf/log/org.apache.karaf.log.core/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/log/org.apache.karaf.log.core/4.2.8/org.apache.karaf.log.core-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/management/ java/cytoscape/framework/system/org/apache/karaf/management/org.apache.karaf.management.server/ java/cytoscape/framework/system/org/apache/karaf/management/org.apache.karaf.management.server/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/management/org.apache.karaf.management.server/4.2.8/org.apache.karaf.management.server-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/org.apache.karaf.client/ java/cytoscape/framework/system/org/apache/karaf/org.apache.karaf.client/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/org.apache.karaf.client/4.2.8/org.apache.karaf.client-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/org.apache.karaf.event/ java/cytoscape/framework/system/org/apache/karaf/org.apache.karaf.event/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/org.apache.karaf.event/4.2.8/org.apache.karaf.event-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/package/ java/cytoscape/framework/system/org/apache/karaf/package/org.apache.karaf.package.core/ java/cytoscape/framework/system/org/apache/karaf/package/org.apache.karaf.package.core/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/package/org.apache.karaf.package.core/4.2.8/org.apache.karaf.package.core-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/scr/ java/cytoscape/framework/system/org/apache/karaf/scr/org.apache.karaf.scr.management/ java/cytoscape/framework/system/org/apache/karaf/scr/org.apache.karaf.scr.management/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/scr/org.apache.karaf.scr.management/4.2.8/org.apache.karaf.scr.management-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/scr/org.apache.karaf.scr.state/ java/cytoscape/framework/system/org/apache/karaf/scr/org.apache.karaf.scr.state/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/scr/org.apache.karaf.scr.state/4.2.8/org.apache.karaf.scr.state-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/service/ java/cytoscape/framework/system/org/apache/karaf/service/org.apache.karaf.service.core/ java/cytoscape/framework/system/org/apache/karaf/service/org.apache.karaf.service.core/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/service/org.apache.karaf.service.core/4.2.8/org.apache.karaf.service.core-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/services/ java/cytoscape/framework/system/org/apache/karaf/services/org.apache.karaf.services.eventadmin/ java/cytoscape/framework/system/org/apache/karaf/services/org.apache.karaf.services.eventadmin/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/services/org.apache.karaf.services.eventadmin/4.2.8/org.apache.karaf.services.eventadmin-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/shell/ java/cytoscape/framework/system/org/apache/karaf/shell/org.apache.karaf.shell.commands/ java/cytoscape/framework/system/org/apache/karaf/shell/org.apache.karaf.shell.commands/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/shell/org.apache.karaf.shell.commands/4.2.8/org.apache.karaf.shell.commands-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/shell/org.apache.karaf.shell.console/ java/cytoscape/framework/system/org/apache/karaf/shell/org.apache.karaf.shell.console/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/shell/org.apache.karaf.shell.console/4.2.8/org.apache.karaf.shell.console-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/shell/org.apache.karaf.shell.core/ java/cytoscape/framework/system/org/apache/karaf/shell/org.apache.karaf.shell.core/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/shell/org.apache.karaf.shell.core/4.2.8/org.apache.karaf.shell.core-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/shell/org.apache.karaf.shell.ssh/ java/cytoscape/framework/system/org/apache/karaf/shell/org.apache.karaf.shell.ssh/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/shell/org.apache.karaf.shell.ssh/4.2.8/org.apache.karaf.shell.ssh-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/shell/org.apache.karaf.shell.table/ java/cytoscape/framework/system/org/apache/karaf/shell/org.apache.karaf.shell.table/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/shell/org.apache.karaf.shell.table/4.2.8/org.apache.karaf.shell.table-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/system/ java/cytoscape/framework/system/org/apache/karaf/system/org.apache.karaf.system.core/ java/cytoscape/framework/system/org/apache/karaf/system/org.apache.karaf.system.core/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/system/org.apache.karaf.system.core/4.2.8/org.apache.karaf.system.core-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/webconsole/ java/cytoscape/framework/system/org/apache/karaf/webconsole/org.apache.karaf.webconsole.http/ java/cytoscape/framework/system/org/apache/karaf/webconsole/org.apache.karaf.webconsole.http/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/webconsole/org.apache.karaf.webconsole.http/4.2.8/org.apache.karaf.webconsole.http-4.2.8.jar java/cytoscape/framework/system/org/apache/karaf/wrapper/ java/cytoscape/framework/system/org/apache/karaf/wrapper/org.apache.karaf.wrapper.core/ java/cytoscape/framework/system/org/apache/karaf/wrapper/org.apache.karaf.wrapper.core/4.2.8/ java/cytoscape/framework/system/org/apache/karaf/wrapper/org.apache.karaf.wrapper.core/4.2.8/org.apache.karaf.wrapper.core-4.2.8.jar java/cytoscape/framework/system/org/apache/openjpa/ java/cytoscape/framework/system/org/apache/openjpa/openjpa-features/ java/cytoscape/framework/system/org/apache/openjpa/openjpa-features/3.0.0/ java/cytoscape/framework/system/org/apache/openjpa/openjpa-features/3.0.0/openjpa-features-3.0.0-features.xml java/cytoscape/framework/system/org/apache/servicemix/ java/cytoscape/framework/system/org/apache/servicemix/bundles/ java/cytoscape/framework/system/org/apache/servicemix/bundles/org.apache.servicemix.bundles.jaxb-impl/ java/cytoscape/framework/system/org/apache/servicemix/bundles/org.apache.servicemix.bundles.jaxb-impl/2.1.6_1/ java/cytoscape/framework/system/org/apache/servicemix/bundles/org.apache.servicemix.bundles.jaxb-impl/2.1.6_1/org.apache.servicemix.bundles.jaxb-impl-2.1.6_1.jar java/cytoscape/framework/system/org/apache/servicemix/bundles/org.apache.servicemix.bundles.not-yet-commons-ssl/ java/cytoscape/framework/system/org/apache/servicemix/bundles/org.apache.servicemix.bundles.not-yet-commons-ssl/0.3.11_1/ java/cytoscape/framework/system/org/apache/servicemix/bundles/org.apache.servicemix.bundles.not-yet-commons-ssl/0.3.11_1/org.apache.servicemix.bundles.not-yet-commons-ssl-0.3.11_1.jar java/cytoscape/framework/system/org/apache/servicemix/bundles/org.apache.servicemix.bundles.xmlbeans/ java/cytoscape/framework/system/org/apache/servicemix/bundles/org.apache.servicemix.bundles.xmlbeans/2.4.0_5/ java/cytoscape/framework/system/org/apache/servicemix/bundles/org.apache.servicemix.bundles.xmlbeans/2.4.0_5/org.apache.servicemix.bundles.xmlbeans-2.4.0_5.jar java/cytoscape/framework/system/org/apache/servicemix/specs/ java/cytoscape/framework/system/org/apache/servicemix/specs/org.apache.servicemix.specs.activation-api-1.1/ java/cytoscape/framework/system/org/apache/servicemix/specs/org.apache.servicemix.specs.activation-api-1.1/2.9.0/ java/cytoscape/framework/system/org/apache/servicemix/specs/org.apache.servicemix.specs.activation-api-1.1/2.9.0/org.apache.servicemix.specs.activation-api-1.1-2.9.0.jar java/cytoscape/framework/system/org/apache/servicemix/specs/org.apache.servicemix.specs.jaxb-api-2.1/ java/cytoscape/framework/system/org/apache/servicemix/specs/org.apache.servicemix.specs.jaxb-api-2.1/1.2.0/ java/cytoscape/framework/system/org/apache/servicemix/specs/org.apache.servicemix.specs.jaxb-api-2.1/1.2.0/org.apache.servicemix.specs.jaxb-api-2.1-1.2.0.jar java/cytoscape/framework/system/org/apache/servicemix/specs/org.apache.servicemix.specs.jaxb-api-2.2/ java/cytoscape/framework/system/org/apache/servicemix/specs/org.apache.servicemix.specs.jaxb-api-2.2/2.9.0/ java/cytoscape/framework/system/org/apache/servicemix/specs/org.apache.servicemix.specs.jaxb-api-2.2/2.9.0/org.apache.servicemix.specs.jaxb-api-2.2-2.9.0.jar java/cytoscape/framework/system/org/apache/servicemix/specs/org.apache.servicemix.specs.jaxws-api-2.2/ java/cytoscape/framework/system/org/apache/servicemix/specs/org.apache.servicemix.specs.jaxws-api-2.2/2.9.0/ java/cytoscape/framework/system/org/apache/servicemix/specs/org.apache.servicemix.specs.jaxws-api-2.2/2.9.0/org.apache.servicemix.specs.jaxws-api-2.2-2.9.0.jar java/cytoscape/framework/system/org/apache/servicemix/specs/org.apache.servicemix.specs.saaj-api-1.3/ java/cytoscape/framework/system/org/apache/servicemix/specs/org.apache.servicemix.specs.saaj-api-1.3/2.9.0/ java/cytoscape/framework/system/org/apache/servicemix/specs/org.apache.servicemix.specs.saaj-api-1.3/2.9.0/org.apache.servicemix.specs.saaj-api-1.3-2.9.0.jar java/cytoscape/framework/system/org/apache/servicemix/specs/org.apache.servicemix.specs.stax-api-1.0/ java/cytoscape/framework/system/org/apache/servicemix/specs/org.apache.servicemix.specs.stax-api-1.0/2.9.0/ java/cytoscape/framework/system/org/apache/servicemix/specs/org.apache.servicemix.specs.stax-api-1.0/2.9.0/org.apache.servicemix.specs.stax-api-1.0-2.9.0.jar java/cytoscape/framework/system/org/apache/sshd/ java/cytoscape/framework/system/org/apache/sshd/sshd-core/ java/cytoscape/framework/system/org/apache/sshd/sshd-core/1.7.0/ java/cytoscape/framework/system/org/apache/sshd/sshd-core/1.7.0/sshd-core-1.7.0.jar java/cytoscape/framework/system/org/apache/xbean/ java/cytoscape/framework/system/org/apache/xbean/xbean-bundleutils/ java/cytoscape/framework/system/org/apache/xbean/xbean-bundleutils/4.14/ java/cytoscape/framework/system/org/apache/xbean/xbean-bundleutils/4.14/xbean-bundleutils-4.14.jar java/cytoscape/framework/system/org/apache/xbean/xbean-finder/ java/cytoscape/framework/system/org/apache/xbean/xbean-finder/4.14/ java/cytoscape/framework/system/org/apache/xbean/xbean-finder/4.14/xbean-finder-4.14.jar java/cytoscape/framework/system/org/apache/xbean/xbean-reflect/ java/cytoscape/framework/system/org/apache/xbean/xbean-reflect/4.14/ java/cytoscape/framework/system/org/apache/xbean/xbean-reflect/4.14/xbean-reflect-4.14.jar java/cytoscape/framework/system/org/cytoscape/ java/cytoscape/framework/system/org/cytoscape/api-bundle/ java/cytoscape/framework/system/org/cytoscape/api-bundle/3.9.1/ java/cytoscape/framework/system/org/cytoscape/api-bundle/3.9.1/api-bundle-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/app-impl/ java/cytoscape/framework/system/org/cytoscape/app-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/app-impl/3.9.1/app-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/application-impl/ java/cytoscape/framework/system/org/cytoscape/application-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/application-impl/3.9.1/application-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/cmdline/ java/cytoscape/framework/system/org/cytoscape/cmdline/3.9.1/ java/cytoscape/framework/system/org/cytoscape/cmdline/3.9.1/cmdline-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/command-executor-impl/ java/cytoscape/framework/system/org/cytoscape/command-executor-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/command-executor-impl/3.9.1/command-executor-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/core-task-impl/ java/cytoscape/framework/system/org/cytoscape/core-task-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/core-task-impl/3.9.1/core-task-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/custom-graphics-internal/ java/cytoscape/framework/system/org/cytoscape/custom-graphics-internal/3.9.1/ java/cytoscape/framework/system/org/cytoscape/custom-graphics-internal/3.9.1/custom-graphics-internal-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/datasource-impl/ java/cytoscape/framework/system/org/cytoscape/datasource-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/datasource-impl/3.9.1/datasource-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/ding-presentation-impl/ java/cytoscape/framework/system/org/cytoscape/ding-presentation-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/ding-presentation-impl/3.9.1/ding-presentation-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/distribution/ java/cytoscape/framework/system/org/cytoscape/distribution/application-metadata-impl/ java/cytoscape/framework/system/org/cytoscape/distribution/application-metadata-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/distribution/application-metadata-impl/3.9.1/application-metadata-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/distribution/cmdline-impl/ java/cytoscape/framework/system/org/cytoscape/distribution/cmdline-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/distribution/cmdline-impl/3.9.1/cmdline-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/distribution/diagnostics-impl/ java/cytoscape/framework/system/org/cytoscape/distribution/diagnostics-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/distribution/diagnostics-impl/3.9.1/diagnostics-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/distribution/features/ java/cytoscape/framework/system/org/cytoscape/distribution/features/3.9.1/ java/cytoscape/framework/system/org/cytoscape/distribution/features/3.9.1/features-3.9.1-features.xml java/cytoscape/framework/system/org/cytoscape/distribution/splash-updater-impl/ java/cytoscape/framework/system/org/cytoscape/distribution/splash-updater-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/distribution/splash-updater-impl/3.9.1/splash-updater-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/distribution/third-party/ java/cytoscape/framework/system/org/cytoscape/distribution/third-party/3.9.1/ java/cytoscape/framework/system/org/cytoscape/distribution/third-party/3.9.1/third-party-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/edge-bundler-impl/ java/cytoscape/framework/system/org/cytoscape/edge-bundler-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/edge-bundler-impl/3.9.1/edge-bundler-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/editor-impl/ java/cytoscape/framework/system/org/cytoscape/editor-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/editor-impl/3.9.1/editor-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/equations-functions-impl/ java/cytoscape/framework/system/org/cytoscape/equations-functions-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/equations-functions-impl/3.9.1/equations-functions-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/equations-impl/ java/cytoscape/framework/system/org/cytoscape/equations-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/equations-impl/3.9.1/equations-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/event-impl/ java/cytoscape/framework/system/org/cytoscape/event-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/event-impl/3.9.1/event-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/filter2-impl/ java/cytoscape/framework/system/org/cytoscape/filter2-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/filter2-impl/3.9.1/filter2-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/graphml-impl/ java/cytoscape/framework/system/org/cytoscape/graphml-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/graphml-impl/3.9.1/graphml-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/group-impl/ java/cytoscape/framework/system/org/cytoscape/group-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/group-impl/3.9.1/group-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/gui-cmdline-parser-impl/ java/cytoscape/framework/system/org/cytoscape/gui-cmdline-parser-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/gui-cmdline-parser-impl/3.9.1/gui-cmdline-parser-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/io-impl/ java/cytoscape/framework/system/org/cytoscape/io-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/io-impl/3.9.1/io-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/jobs-impl/ java/cytoscape/framework/system/org/cytoscape/jobs-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/jobs-impl/3.9.1/jobs-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/layout-cytoscape-impl/ java/cytoscape/framework/system/org/cytoscape/layout-cytoscape-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/layout-cytoscape-impl/3.9.1/layout-cytoscape-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/layout-impl/ java/cytoscape/framework/system/org/cytoscape/layout-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/layout-impl/3.9.1/layout-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/layout-prefuse-impl/ java/cytoscape/framework/system/org/cytoscape/layout-prefuse-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/layout-prefuse-impl/3.9.1/layout-prefuse-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/linkout-impl/ java/cytoscape/framework/system/org/cytoscape/linkout-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/linkout-impl/3.9.1/linkout-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/manual-layout-impl/ java/cytoscape/framework/system/org/cytoscape/manual-layout-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/manual-layout-impl/3.9.1/manual-layout-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/model-impl/ java/cytoscape/framework/system/org/cytoscape/model-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/model-impl/3.9.1/model-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/presentation-impl/ java/cytoscape/framework/system/org/cytoscape/presentation-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/presentation-impl/3.9.1/presentation-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/property-impl/ java/cytoscape/framework/system/org/cytoscape/property-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/property-impl/3.9.1/property-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/scripting-impl/ java/cytoscape/framework/system/org/cytoscape/scripting-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/scripting-impl/3.9.1/scripting-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/search-impl/ java/cytoscape/framework/system/org/cytoscape/search-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/search-impl/3.9.1/search-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/session-impl/ java/cytoscape/framework/system/org/cytoscape/session-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/session-impl/3.9.1/session-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/swing-application-impl/ java/cytoscape/framework/system/org/cytoscape/swing-application-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/swing-application-impl/3.9.1/swing-application-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/swing-util-impl/ java/cytoscape/framework/system/org/cytoscape/swing-util-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/swing-util-impl/3.9.1/swing-util-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/table-browser-impl/ java/cytoscape/framework/system/org/cytoscape/table-browser-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/table-browser-impl/3.9.1/table-browser-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/table-import-impl/ java/cytoscape/framework/system/org/cytoscape/table-import-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/table-import-impl/3.9.1/table-import-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/table-presentation-impl/ java/cytoscape/framework/system/org/cytoscape/table-presentation-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/table-presentation-impl/3.9.1/table-presentation-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/util-impl/ java/cytoscape/framework/system/org/cytoscape/util-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/util-impl/3.9.1/util-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/viewmodel-impl/ java/cytoscape/framework/system/org/cytoscape/viewmodel-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/viewmodel-impl/3.9.1/viewmodel-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/vizmap-gui-core-impl/ java/cytoscape/framework/system/org/cytoscape/vizmap-gui-core-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/vizmap-gui-core-impl/3.9.1/vizmap-gui-core-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/vizmap-gui-impl/ java/cytoscape/framework/system/org/cytoscape/vizmap-gui-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/vizmap-gui-impl/3.9.1/vizmap-gui-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/vizmap-impl/ java/cytoscape/framework/system/org/cytoscape/vizmap-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/vizmap-impl/3.9.1/vizmap-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/webservice-impl/ java/cytoscape/framework/system/org/cytoscape/webservice-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/webservice-impl/3.9.1/webservice-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/work-impl/ java/cytoscape/framework/system/org/cytoscape/work-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/work-impl/3.9.1/work-impl-3.9.1.jar java/cytoscape/framework/system/org/cytoscape/work-swing-impl/ java/cytoscape/framework/system/org/cytoscape/work-swing-impl/3.9.1/ java/cytoscape/framework/system/org/cytoscape/work-swing-impl/3.9.1/work-swing-impl-3.9.1.jar java/cytoscape/framework/system/org/eclipse/ java/cytoscape/framework/system/org/eclipse/jetty/ java/cytoscape/framework/system/org/eclipse/jetty/aggregate/ java/cytoscape/framework/system/org/eclipse/jetty/aggregate/jetty-all-server/ java/cytoscape/framework/system/org/eclipse/jetty/aggregate/jetty-all-server/8.1.14.v20131031/ java/cytoscape/framework/system/org/eclipse/jetty/aggregate/jetty-all-server/8.1.14.v20131031/jetty-all-server-8.1.14.v20131031.jar java/cytoscape/framework/system/org/eclipse/jetty/jetty-client/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-client/9.4.22.v20191022/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-client/9.4.22.v20191022/jetty-client-9.4.22.v20191022.jar java/cytoscape/framework/system/org/eclipse/jetty/jetty-continuation/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-continuation/9.4.22.v20191022/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-continuation/9.4.22.v20191022/jetty-continuation-9.4.22.v20191022.jar java/cytoscape/framework/system/org/eclipse/jetty/jetty-deploy/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-deploy/9.4.22.v20191022/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-deploy/9.4.22.v20191022/jetty-deploy-9.4.22.v20191022.jar java/cytoscape/framework/system/org/eclipse/jetty/jetty-http/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-http/9.4.22.v20191022/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-http/9.4.22.v20191022/jetty-http-9.4.22.v20191022.jar java/cytoscape/framework/system/org/eclipse/jetty/jetty-io/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-io/9.4.22.v20191022/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-io/9.4.22.v20191022/jetty-io-9.4.22.v20191022.jar java/cytoscape/framework/system/org/eclipse/jetty/jetty-jaas/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-jaas/9.4.22.v20191022/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-jaas/9.4.22.v20191022/jetty-jaas-9.4.22.v20191022.jar java/cytoscape/framework/system/org/eclipse/jetty/jetty-jaspi/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-jaspi/9.4.22.v20191022/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-jaspi/9.4.22.v20191022/jetty-jaspi-9.4.22.v20191022.jar java/cytoscape/framework/system/org/eclipse/jetty/jetty-jmx/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-jmx/9.4.22.v20191022/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-jmx/9.4.22.v20191022/jetty-jmx-9.4.22.v20191022.jar java/cytoscape/framework/system/org/eclipse/jetty/jetty-jndi/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-jndi/9.4.22.v20191022/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-jndi/9.4.22.v20191022/jetty-jndi-9.4.22.v20191022.jar java/cytoscape/framework/system/org/eclipse/jetty/jetty-plus/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-plus/9.4.22.v20191022/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-plus/9.4.22.v20191022/jetty-plus-9.4.22.v20191022.jar java/cytoscape/framework/system/org/eclipse/jetty/jetty-proxy/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-proxy/9.4.22.v20191022/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-proxy/9.4.22.v20191022/jetty-proxy-9.4.22.v20191022.jar java/cytoscape/framework/system/org/eclipse/jetty/jetty-rewrite/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-rewrite/9.4.22.v20191022/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-rewrite/9.4.22.v20191022/jetty-rewrite-9.4.22.v20191022.jar java/cytoscape/framework/system/org/eclipse/jetty/jetty-security/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-security/9.4.22.v20191022/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-security/9.4.22.v20191022/jetty-security-9.4.22.v20191022.jar java/cytoscape/framework/system/org/eclipse/jetty/jetty-server/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-server/9.4.22.v20191022/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-server/9.4.22.v20191022/jetty-server-9.4.22.v20191022.jar java/cytoscape/framework/system/org/eclipse/jetty/jetty-servlet/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-servlet/9.4.22.v20191022/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-servlet/9.4.22.v20191022/jetty-servlet-9.4.22.v20191022.jar java/cytoscape/framework/system/org/eclipse/jetty/jetty-servlets/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-servlets/9.4.22.v20191022/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-servlets/9.4.22.v20191022/jetty-servlets-9.4.22.v20191022.jar java/cytoscape/framework/system/org/eclipse/jetty/jetty-util-ajax/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-util-ajax/9.4.22.v20191022/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-util-ajax/9.4.22.v20191022/jetty-util-ajax-9.4.22.v20191022.jar java/cytoscape/framework/system/org/eclipse/jetty/jetty-util/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-util/9.4.22.v20191022/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-util/9.4.22.v20191022/jetty-util-9.4.22.v20191022.jar java/cytoscape/framework/system/org/eclipse/jetty/jetty-webapp/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-webapp/9.4.22.v20191022/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-webapp/9.4.22.v20191022/jetty-webapp-9.4.22.v20191022.jar java/cytoscape/framework/system/org/eclipse/jetty/jetty-xml/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-xml/9.4.22.v20191022/ java/cytoscape/framework/system/org/eclipse/jetty/jetty-xml/9.4.22.v20191022/jetty-xml-9.4.22.v20191022.jar java/cytoscape/framework/system/org/eclipse/jetty/websocket/ java/cytoscape/framework/system/org/eclipse/jetty/websocket/javax-websocket-client-impl/ java/cytoscape/framework/system/org/eclipse/jetty/websocket/javax-websocket-client-impl/9.4.22.v20191022/ java/cytoscape/framework/system/org/eclipse/jetty/websocket/javax-websocket-client-impl/9.4.22.v20191022/javax-websocket-client-impl-9.4.22.v20191022.jar java/cytoscape/framework/system/org/eclipse/jetty/websocket/javax-websocket-server-impl/ java/cytoscape/framework/system/org/eclipse/jetty/websocket/javax-websocket-server-impl/9.4.22.v20191022/ java/cytoscape/framework/system/org/eclipse/jetty/websocket/javax-websocket-server-impl/9.4.22.v20191022/javax-websocket-server-impl-9.4.22.v20191022.jar java/cytoscape/framework/system/org/eclipse/jetty/websocket/websocket-api/ java/cytoscape/framework/system/org/eclipse/jetty/websocket/websocket-api/9.4.22.v20191022/ java/cytoscape/framework/system/org/eclipse/jetty/websocket/websocket-api/9.4.22.v20191022/websocket-api-9.4.22.v20191022.jar java/cytoscape/framework/system/org/eclipse/jetty/websocket/websocket-client/ java/cytoscape/framework/system/org/eclipse/jetty/websocket/websocket-client/9.4.22.v20191022/ java/cytoscape/framework/system/org/eclipse/jetty/websocket/websocket-client/9.4.22.v20191022/websocket-client-9.4.22.v20191022.jar java/cytoscape/framework/system/org/eclipse/jetty/websocket/websocket-common/ java/cytoscape/framework/system/org/eclipse/jetty/websocket/websocket-common/9.4.22.v20191022/ java/cytoscape/framework/system/org/eclipse/jetty/websocket/websocket-common/9.4.22.v20191022/websocket-common-9.4.22.v20191022.jar java/cytoscape/framework/system/org/eclipse/jetty/websocket/websocket-server/ java/cytoscape/framework/system/org/eclipse/jetty/websocket/websocket-server/9.4.22.v20191022/ java/cytoscape/framework/system/org/eclipse/jetty/websocket/websocket-server/9.4.22.v20191022/websocket-server-9.4.22.v20191022.jar java/cytoscape/framework/system/org/eclipse/jetty/websocket/websocket-servlet/ java/cytoscape/framework/system/org/eclipse/jetty/websocket/websocket-servlet/9.4.22.v20191022/ java/cytoscape/framework/system/org/eclipse/jetty/websocket/websocket-servlet/9.4.22.v20191022/websocket-servlet-9.4.22.v20191022.jar java/cytoscape/framework/system/org/eclipse/platform/ java/cytoscape/framework/system/org/eclipse/platform/org.eclipse.osgi/ java/cytoscape/framework/system/org/eclipse/platform/org.eclipse.osgi/3.12.100/ java/cytoscape/framework/system/org/eclipse/platform/org.eclipse.osgi/3.12.100/org.eclipse.osgi-3.12.100.jar java/cytoscape/framework/system/org/fusesource/ java/cytoscape/framework/system/org/fusesource/jansi/ java/cytoscape/framework/system/org/fusesource/jansi/jansi/ java/cytoscape/framework/system/org/fusesource/jansi/jansi/1.18/ java/cytoscape/framework/system/org/fusesource/jansi/jansi/1.18/jansi-1.18.jar java/cytoscape/framework/system/org/hibernate/ java/cytoscape/framework/system/org/hibernate/validator/ java/cytoscape/framework/system/org/hibernate/validator/hibernate-validator-osgi-karaf-features/ java/cytoscape/framework/system/org/hibernate/validator/hibernate-validator-osgi-karaf-features/6.1.0.Final/ java/cytoscape/framework/system/org/hibernate/validator/hibernate-validator-osgi-karaf-features/6.1.0.Final/hibernate-validator-osgi-karaf-features-6.1.0.Final-features.xml java/cytoscape/framework/system/org/jline/ java/cytoscape/framework/system/org/jline/jline-builtins/ java/cytoscape/framework/system/org/jline/jline-builtins/3.13.2/ java/cytoscape/framework/system/org/jline/jline-builtins/3.13.2/jline-builtins-3.13.2.jar java/cytoscape/framework/system/org/jline/jline-reader/ java/cytoscape/framework/system/org/jline/jline-reader/3.13.2/ java/cytoscape/framework/system/org/jline/jline-reader/3.13.2/jline-reader-3.13.2.jar java/cytoscape/framework/system/org/jline/jline-terminal-jansi/ java/cytoscape/framework/system/org/jline/jline-terminal-jansi/3.13.2/ java/cytoscape/framework/system/org/jline/jline-terminal-jansi/3.13.2/jline-terminal-jansi-3.13.2.jar java/cytoscape/framework/system/org/jline/jline-terminal/ java/cytoscape/framework/system/org/jline/jline-terminal/3.13.2/ java/cytoscape/framework/system/org/jline/jline-terminal/3.13.2/jline-terminal-3.13.2.jar java/cytoscape/framework/system/org/jline/jline/ java/cytoscape/framework/system/org/jline/jline/3.13.2/ java/cytoscape/framework/system/org/jline/jline/3.13.2/jline-3.13.2.jar java/cytoscape/framework/system/org/ops4j/ java/cytoscape/framework/system/org/ops4j/pax/ java/cytoscape/framework/system/org/ops4j/pax/cdi/ java/cytoscape/framework/system/org/ops4j/pax/cdi/pax-cdi-features/ java/cytoscape/framework/system/org/ops4j/pax/cdi/pax-cdi-features/1.1.2/ java/cytoscape/framework/system/org/ops4j/pax/cdi/pax-cdi-features/1.1.2/pax-cdi-features-1.1.2-features.xml java/cytoscape/framework/system/org/ops4j/pax/jdbc/ java/cytoscape/framework/system/org/ops4j/pax/jdbc/pax-jdbc-features/ java/cytoscape/framework/system/org/ops4j/pax/jdbc/pax-jdbc-features/1.4.4/ java/cytoscape/framework/system/org/ops4j/pax/jdbc/pax-jdbc-features/1.4.4/pax-jdbc-features-1.4.4-features.xml java/cytoscape/framework/system/org/ops4j/pax/jms/ java/cytoscape/framework/system/org/ops4j/pax/jms/pax-jms-features/ java/cytoscape/framework/system/org/ops4j/pax/jms/pax-jms-features/1.0.6/ java/cytoscape/framework/system/org/ops4j/pax/jms/pax-jms-features/1.0.6/pax-jms-features-1.0.6-features.xml java/cytoscape/framework/system/org/ops4j/pax/logging/ java/cytoscape/framework/system/org/ops4j/pax/logging/pax-logging-api/ java/cytoscape/framework/system/org/ops4j/pax/logging/pax-logging-api/1.11.13/ java/cytoscape/framework/system/org/ops4j/pax/logging/pax-logging-api/1.11.13/pax-logging-api-1.11.13.jar java/cytoscape/framework/system/org/ops4j/pax/logging/pax-logging-log4j2/ java/cytoscape/framework/system/org/ops4j/pax/logging/pax-logging-log4j2/1.11.13/ java/cytoscape/framework/system/org/ops4j/pax/logging/pax-logging-log4j2/1.11.13/pax-logging-log4j2-1.11.13.jar java/cytoscape/framework/system/org/ops4j/pax/logging/pax-logging-logback/ java/cytoscape/framework/system/org/ops4j/pax/logging/pax-logging-logback/1.11.13/ java/cytoscape/framework/system/org/ops4j/pax/logging/pax-logging-logback/1.11.13/pax-logging-logback-1.11.13.jar java/cytoscape/framework/system/org/ops4j/pax/transx/ java/cytoscape/framework/system/org/ops4j/pax/transx/pax-transx-features/ java/cytoscape/framework/system/org/ops4j/pax/transx/pax-transx-features/0.4.4/ java/cytoscape/framework/system/org/ops4j/pax/transx/pax-transx-features/0.4.4/pax-transx-features-0.4.4-features.xml java/cytoscape/framework/system/org/ops4j/pax/url/ java/cytoscape/framework/system/org/ops4j/pax/url/pax-url-aether/ java/cytoscape/framework/system/org/ops4j/pax/url/pax-url-aether/2.6.2/ java/cytoscape/framework/system/org/ops4j/pax/url/pax-url-aether/2.6.2/pax-url-aether-2.6.2.jar java/cytoscape/framework/system/org/ops4j/pax/url/pax-url-wrap/ java/cytoscape/framework/system/org/ops4j/pax/url/pax-url-wrap/2.6.2/ java/cytoscape/framework/system/org/ops4j/pax/url/pax-url-wrap/2.6.2/pax-url-wrap-2.6.2-uber.jar java/cytoscape/framework/system/org/ops4j/pax/web/ java/cytoscape/framework/system/org/ops4j/pax/web/pax-web-api/ java/cytoscape/framework/system/org/ops4j/pax/web/pax-web-api/7.2.14/ java/cytoscape/framework/system/org/ops4j/pax/web/pax-web-api/7.2.14/pax-web-api-7.2.14.jar java/cytoscape/framework/system/org/ops4j/pax/web/pax-web-features/ java/cytoscape/framework/system/org/ops4j/pax/web/pax-web-features/7.2.14/ java/cytoscape/framework/system/org/ops4j/pax/web/pax-web-features/7.2.14/pax-web-features-7.2.14-features.xml java/cytoscape/framework/system/org/ops4j/pax/web/pax-web-features/7.2.14/pax-web-features-7.2.14-jettyconfig.xml java/cytoscape/framework/system/org/ops4j/pax/web/pax-web-jetty/ java/cytoscape/framework/system/org/ops4j/pax/web/pax-web-jetty/7.2.14/ java/cytoscape/framework/system/org/ops4j/pax/web/pax-web-jetty/7.2.14/pax-web-jetty-7.2.14.jar java/cytoscape/framework/system/org/ops4j/pax/web/pax-web-runtime/ java/cytoscape/framework/system/org/ops4j/pax/web/pax-web-runtime/7.2.14/ java/cytoscape/framework/system/org/ops4j/pax/web/pax-web-runtime/7.2.14/pax-web-runtime-7.2.14.jar java/cytoscape/framework/system/org/ops4j/pax/web/pax-web-spi/ java/cytoscape/framework/system/org/ops4j/pax/web/pax-web-spi/7.2.14/ java/cytoscape/framework/system/org/ops4j/pax/web/pax-web-spi/7.2.14/pax-web-spi-7.2.14.jar java/cytoscape/framework/system/org/osgi/ java/cytoscape/framework/system/org/osgi/org.osgi.util.function/ java/cytoscape/framework/system/org/osgi/org.osgi.util.function/1.0.0/ java/cytoscape/framework/system/org/osgi/org.osgi.util.function/1.0.0/org.osgi.util.function-1.0.0.jar java/cytoscape/framework/system/org/osgi/org.osgi.util.promise/ java/cytoscape/framework/system/org/osgi/org.osgi.util.promise/1.0.0/ java/cytoscape/framework/system/org/osgi/org.osgi.util.promise/1.0.0/org.osgi.util.promise-1.0.0.jar java/cytoscape/framework/system/org/ow2/ java/cytoscape/framework/system/org/ow2/asm/ java/cytoscape/framework/system/org/ow2/asm/asm-analysis/ java/cytoscape/framework/system/org/ow2/asm/asm-analysis/7.2/ java/cytoscape/framework/system/org/ow2/asm/asm-analysis/7.2/asm-analysis-7.2.jar java/cytoscape/framework/system/org/ow2/asm/asm-commons/ java/cytoscape/framework/system/org/ow2/asm/asm-commons/7.2/ java/cytoscape/framework/system/org/ow2/asm/asm-commons/7.2/asm-commons-7.2.jar java/cytoscape/framework/system/org/ow2/asm/asm-tree/ java/cytoscape/framework/system/org/ow2/asm/asm-tree/7.2/ java/cytoscape/framework/system/org/ow2/asm/asm-tree/7.2/asm-tree-7.2.jar java/cytoscape/framework/system/org/ow2/asm/asm-util/ java/cytoscape/framework/system/org/ow2/asm/asm-util/7.2/ java/cytoscape/framework/system/org/ow2/asm/asm-util/7.2/asm-util-7.2.jar java/cytoscape/framework/system/org/ow2/asm/asm/ java/cytoscape/framework/system/org/ow2/asm/asm/7.2/ java/cytoscape/framework/system/org/ow2/asm/asm/7.2/asm-7.2.jar java/cytoscape/framework/instances/ java/cytoscape/framework/instances/instance.properties java/cytoscape/cytoscape.sh java/cytoscape/sampleData/ java/cytoscape/sampleData/sessions/ java/cytoscape/sampleData/sessions/Affinity Purification.cys java/cytoscape/sampleData/sessions/Import & Save.cys java/cytoscape/sampleData/sessions/Ivacaftor Coauthor.cys java/cytoscape/sampleData/sessions/Styles Demo.cys java/cytoscape/sampleData/sessions/TCGA Colorectal Cancer.cys java/cytoscape/sampleData/sessions/Yeast Gene Interactions.cys java/cytoscape/sampleData/sessions/Yeast Perturbation.cys java/cytoscape/sampleData/BINDhuman.sif java/cytoscape/sampleData/BINDyeast.sif java/cytoscape/sampleData/galExpData.csv java/cytoscape/sampleData/galFiltered.cys java/cytoscape/sampleData/galFiltered.sif java/cytoscape/sampleData/importNetworkFromFile.csv java/cytoscape/sampleData/sampleStyles.xml java/cytoscape/gen_vmoptions.sh java/cytoscape/Cytoscape.installoptions java/cytoscape/Cytoscape.vmoptions java/cytoscape/Cytoscape.desktop java/cytoscape/output.log java/cytoscape/cytoscape.sh.test1 java/cytoscape/Cytoscape.test java/cytoscape/cytoscape.sh.bak1 java/mauve java/pcdeditor.0.7.9 java/JalviewTests1.html java/FastQC/ java/FastQC/cisd-jhdf5.jar java/FastQC/Configuration/ java/FastQC/Configuration/adapter_list.txt java/FastQC/Configuration/contaminant_list.txt java/FastQC/Configuration/limits.txt java/FastQC/fastqc java/FastQC/fastqc_icon.ico java/FastQC/Help/ java/FastQC/Help/1 Introduction/ java/FastQC/Help/1 Introduction/.svn/ java/FastQC/Help/1 Introduction/.svn/entries java/FastQC/Help/1 Introduction/.svn/props/ java/FastQC/Help/1 Introduction/.svn/text-base/ java/FastQC/Help/1 Introduction/.svn/text-base/1.1 What is FastQC.html.svn-base java/FastQC/Help/1 Introduction/.svn/tmp/ java/FastQC/Help/1 Introduction/.svn/tmp/props/ java/FastQC/Help/1 Introduction/1.1 What is FastQC.html java/FastQC/Help/2 Basic Operations/ java/FastQC/Help/2 Basic Operations/.svn/ java/FastQC/Help/2 Basic Operations/.svn/entries 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java/TM4/MeV_4_8_1/documentation/RNA-Seq_Quickstart_Guide.pdf java/TM4/MeV_4_8_1/documentation/MeV_quickstart_guide.pdf java/TM4/MeV_4_8_1/documentation/MeV_release_notes.pdf java/TM4/MeV_4_8_1/jri/ java/TM4/MeV_4_8_1/jri/bootstrap/ java/TM4/MeV_4_8_1/jri/bootstrap/DelegatedClassLoader.java java/TM4/MeV_4_8_1/jri/bootstrap/Boot.java java/TM4/MeV_4_8_1/jri/bootstrap/DelegatedURLClassLoader.java java/TM4/MeV_4_8_1/jri/bootstrap/JRIBootstrap.c java/TM4/MeV_4_8_1/jri/bootstrap/JRIBootstrap.h java/TM4/MeV_4_8_1/jri/bootstrap/JRIBootstrap.java java/TM4/MeV_4_8_1/jri/bootstrap/JRIClassLoader.java java/TM4/MeV_4_8_1/jri/bootstrap/Makefile java/TM4/MeV_4_8_1/jri/bootstrap/mft java/TM4/MeV_4_8_1/jri/examples/ java/TM4/MeV_4_8_1/jri/examples/TextConsole.class java/TM4/MeV_4_8_1/jri/examples/TextConsole2.class java/TM4/MeV_4_8_1/jri/examples/rtest.class java/TM4/MeV_4_8_1/jri/examples/rtest.java java/TM4/MeV_4_8_1/jri/examples/rtest2.class java/TM4/MeV_4_8_1/jri/examples/rtest2.java java/TM4/MeV_4_8_1/jri/src/ java/TM4/MeV_4_8_1/jri/src/org/ java/TM4/MeV_4_8_1/jri/src/org/rosuda/ java/TM4/MeV_4_8_1/jri/src/org/rosuda/JRI/ java/TM4/MeV_4_8_1/jri/src/org/rosuda/JRI/RConsoleOutputStream.class java/TM4/MeV_4_8_1/jri/src/org/rosuda/JRI/Mutex.class java/TM4/MeV_4_8_1/jri/src/org/rosuda/JRI/RBool.class java/TM4/MeV_4_8_1/jri/src/org/rosuda/JRI/REXP.class java/TM4/MeV_4_8_1/jri/src/org/rosuda/JRI/RFactor.class java/TM4/MeV_4_8_1/jri/src/org/rosuda/JRI/RList.class java/TM4/MeV_4_8_1/jri/src/org/rosuda/JRI/RMainLoopCallbacks.class java/TM4/MeV_4_8_1/jri/src/org/rosuda/JRI/RVector.class java/TM4/MeV_4_8_1/jri/src/org/rosuda/JRI/Rengine.class java/TM4/MeV_4_8_1/jri/src/win32/ java/TM4/MeV_4_8_1/jri/src/win32/Makefile java/TM4/MeV_4_8_1/jri/src/win32/findjava.c java/TM4/MeV_4_8_1/jri/src/win32/jvm.def java/TM4/MeV_4_8_1/jri/src/win32/jvm64.def java/TM4/MeV_4_8_1/jri/src/Makefile java/TM4/MeV_4_8_1/jri/src/Makefile.all java/TM4/MeV_4_8_1/jri/src/Makefile.in java/TM4/MeV_4_8_1/jri/src/Makefile.win java/TM4/MeV_4_8_1/jri/src/Rcallbacks.c java/TM4/MeV_4_8_1/jri/src/Rcallbacks.h java/TM4/MeV_4_8_1/jri/src/Rcallbacks.o java/TM4/MeV_4_8_1/jri/src/Rdecl.h java/TM4/MeV_4_8_1/jri/src/Rengine.c java/TM4/MeV_4_8_1/jri/src/Rengine.o java/TM4/MeV_4_8_1/jri/src/Rinit.c java/TM4/MeV_4_8_1/jri/src/Rinit.h java/TM4/MeV_4_8_1/jri/src/Rinit.o java/TM4/MeV_4_8_1/jri/src/config.h java/TM4/MeV_4_8_1/jri/src/config.h.in java/TM4/MeV_4_8_1/jri/src/globals.c java/TM4/MeV_4_8_1/jri/src/globals.h java/TM4/MeV_4_8_1/jri/src/globals.o java/TM4/MeV_4_8_1/jri/src/h2ic java/TM4/MeV_4_8_1/jri/src/jri.c java/TM4/MeV_4_8_1/jri/src/jri.h java/TM4/MeV_4_8_1/jri/src/jri.o java/TM4/MeV_4_8_1/jri/src/libjri.so java/TM4/MeV_4_8_1/jri/src/org_rosuda_JRI_Rengine.h java/TM4/MeV_4_8_1/jri/src/rjava.c java/TM4/MeV_4_8_1/jri/src/rjava.h java/TM4/MeV_4_8_1/jri/src/rjava.o java/TM4/MeV_4_8_1/jri/tools/ java/TM4/MeV_4_8_1/jri/tools/config.guess java/TM4/MeV_4_8_1/jri/tools/config.sub java/TM4/MeV_4_8_1/jri/tools/getsp.class java/TM4/MeV_4_8_1/jri/tools/getsp.java java/TM4/MeV_4_8_1/jri/tools/install-sh java/TM4/MeV_4_8_1/jri/tools/mkinstalldirs java/TM4/MeV_4_8_1/jri/RConsoleOutputStream.java java/TM4/MeV_4_8_1/jri/LGPL.txt java/TM4/MeV_4_8_1/jri/LICENSE java/TM4/MeV_4_8_1/jri/Makefile java/TM4/MeV_4_8_1/jri/Makefile.all java/TM4/MeV_4_8_1/jri/Makefile.in java/TM4/MeV_4_8_1/jri/Makefile.win java/TM4/MeV_4_8_1/jri/Makevars.win java/TM4/MeV_4_8_1/jri/Mutex.java java/TM4/MeV_4_8_1/jri/NEWS java/TM4/MeV_4_8_1/jri/RBool.java java/TM4/MeV_4_8_1/jri/README java/TM4/MeV_4_8_1/jri/REXP.java java/TM4/MeV_4_8_1/jri/RFactor.java java/TM4/MeV_4_8_1/jri/RList.java java/TM4/MeV_4_8_1/jri/RMainLoopCallbacks.java java/TM4/MeV_4_8_1/jri/RVector.java java/TM4/MeV_4_8_1/jri/Rengine.java java/TM4/MeV_4_8_1/jri/config.log java/TM4/MeV_4_8_1/jri/config.status java/TM4/MeV_4_8_1/jri/configure java/TM4/MeV_4_8_1/jri/configure.ac java/TM4/MeV_4_8_1/jri/configure.win java/TM4/MeV_4_8_1/jri/libjri.jnilib java/TM4/MeV_4_8_1/jri/package-info.java java/TM4/MeV_4_8_1/jri/run java/TM4/MeV_4_8_1/jri/run.in java/TM4/MeV_4_8_1/jri/version java/TM4/MeV_4_8_1/lib/ java/TM4/MeV_4_8_1/lib/mev-algorithm-support.jar java/TM4/MeV_4_8_1/lib/HTTPClient.jar java/TM4/MeV_4_8_1/lib/JRI.jar java/TM4/MeV_4_8_1/lib/JSciCore.jar java/TM4/MeV_4_8_1/lib/JSciPartial.jar java/TM4/MeV_4_8_1/lib/Text_JDBC30.jar java/TM4/MeV_4_8_1/lib/args4j-2.0.9.jar java/TM4/MeV_4_8_1/lib/base64.jar java/TM4/MeV_4_8_1/lib/colt.jar java/TM4/MeV_4_8_1/lib/comcgh.jar java/TM4/MeV_4_8_1/lib/educgh.jar java/TM4/MeV_4_8_1/lib/ftpbean.jar java/TM4/MeV_4_8_1/lib/goose.jar java/TM4/MeV_4_8_1/lib/images.jar java/TM4/MeV_4_8_1/lib/j3dcore.jar java/TM4/MeV_4_8_1/lib/j3dutils.jar java/TM4/MeV_4_8_1/lib/jai_codec.jar java/TM4/MeV_4_8_1/lib/jai_core.jar java/TM4/MeV_4_8_1/lib/jama.jar java/TM4/MeV_4_8_1/lib/jbcl.jar java/TM4/MeV_4_8_1/lib/jcommon-1.0.16.jar java/TM4/MeV_4_8_1/lib/jfreechart-1.0.13.jar java/TM4/MeV_4_8_1/lib/jsch-0.1.39.jar java/TM4/MeV_4_8_1/lib/magetab-parser.jar java/TM4/MeV_4_8_1/lib/mev-algorithm-impl.jar java/TM4/MeV_4_8_1/lib/mev-base.jar java/TM4/MeV_4_8_1/lib/mev-gui-impl.jar java/TM4/MeV_4_8_1/lib/mev-gui-support.jar java/TM4/MeV_4_8_1/lib/mev-util.jar java/TM4/MeV_4_8_1/lib/normalization.jar java/TM4/MeV_4_8_1/lib/piccolo.jar java/TM4/MeV_4_8_1/lib/piccolox.jar java/TM4/MeV_4_8_1/lib/servlet.jar java/TM4/MeV_4_8_1/lib/vecmath.jar java/TM4/MeV_4_8_1/lib/weka.jar java/TM4/MeV_4_8_1/lib/xerces.jar java/TM4/MeV_4_8_1/lib/xml-apis.jar java/TM4/MeV_4_8_1/plugins/ java/TM4/MeV_4_8_1/plugins/vizmap.props java/TM4/MeV_4_8_1/artistic_license.txt java/TM4/MeV_4_8_1/makejrilib.sh java/TM4/MeV_4_8_1/rhook.log java/TM4/MeV_4_8_1/tmev.sh java/TM4/MeV_4_8_1/tmev.sh.zhangju java/TM4/MeV_4_8_1/tmev.sh_copy java/TM4/MeV_4_8_1/www.tm4.org.url java/Trimmomatic-0.36/ java/Trimmomatic-0.36/trimmomatic.jar java/Trimmomatic-0.36/adapters/ java/Trimmomatic-0.36/adapters/NexteraPE-PE.fa java/Trimmomatic-0.36/adapters/TruSeq2-PE.fa java/Trimmomatic-0.36/adapters/TruSeq2-SE.fa java/Trimmomatic-0.36/adapters/TruSeq3-PE-2.fa java/Trimmomatic-0.36/adapters/TruSeq3-PE.fa java/Trimmomatic-0.36/adapters/TruSeq3-SE.fa java/Trimmomatic-0.36/TrimmomaticManual_V0.32.pdf java/Trimmomatic-0.36/LICENSE java/Trimmomatic-0.36/trimmomatic-0.36.jar java/biolegato-dev/ java/biolegato-dev/BioLegato/ java/biolegato-dev/BioLegato/ChangeLog.html java/biolegato-dev/BioLegato/LICENSE.html java/biolegato-dev/BioLegato/LICENSE.txt java/biolegato-dev/BioLegato/README.txt java/biolegato-dev/BioLegato/README_CreateNewVersion.txt java/biolegato-dev/BioLegato/README_CreateNewVersion.txt~ java/biolegato-dev/BioLegato/biolegato.jar java/biolegato-dev/BioLegato/biopcd.jar java/biolegato-dev/BioLegato/biopcdedit.jar java/biolegato-dev/BioLegato/docs java/biolegato-dev/BioLegato/gde2pcd.jar java/biolegato-dev/BioLegato/image.jar java/biolegato-dev/BioLegato/manpage.txt java/biolegato-dev/BioLegato/pcdcanvas.jar java/biolegato-dev/BioLegato/sequence.jar java/biolegato-dev/BioLegato/src/ java/biolegato-dev/BioLegato/src/.DS_Store java/biolegato-dev/BioLegato/src/.cvsignore java/biolegato-dev/BioLegato/src/BioPCD/ java/biolegato-dev/BioLegato/src/BioPCD/.DS_Store java/biolegato-dev/BioLegato/src/BioPCD/GDE2PCD/ java/biolegato-dev/BioLegato/src/BioPCD/GDE2PCD/.DS_Store java/biolegato-dev/BioLegato/src/BioPCD/GDE2PCD/.cvsignore java/biolegato-dev/BioLegato/src/BioPCD/GDE2PCD/bin/ java/biolegato-dev/BioLegato/src/BioPCD/GDE2PCD/bin/gde2pcd.jar java/biolegato-dev/BioLegato/src/BioPCD/GDE2PCD/build.old java/biolegato-dev/BioLegato/src/BioPCD/GDE2PCD/build.xml java/biolegato-dev/BioLegato/src/BioPCD/GDE2PCD/package.properties java/biolegato-dev/BioLegato/src/BioPCD/GDE2PCD/src/ java/biolegato-dev/BioLegato/src/BioPCD/GDE2PCD/src/org/ java/biolegato-dev/BioLegato/src/BioPCD/GDE2PCD/src/org/biolegato/ java/biolegato-dev/BioLegato/src/BioPCD/GDE2PCD/src/org/biolegato/gde2pcd/ java/biolegato-dev/BioLegato/src/BioPCD/GDE2PCD/src/org/biolegato/gde2pcd/GDE2PCD.java java/biolegato-dev/BioLegato/src/BioPCD/GDE2PCD/src/org/biolegato/gde2pcd/GDEMakeMenus.java java/biolegato-dev/BioLegato/src/BioPCD/GDE2PCD/src/org/biolegato/gde2pcd/GDEMenu.java java/biolegato-dev/BioLegato/src/BioPCD/GDE2PCD/src/org/biolegato/gde2pcd/GDEMenuParser.java java/biolegato-dev/BioLegato/src/BioPCD/GDE2PCD/src/usage.txt java/biolegato-dev/BioLegato/src/BioPCD/bin/ java/biolegato-dev/BioLegato/src/BioPCD/bin/biopcd.jar java/biolegato-dev/BioLegato/src/BioPCD/bin/gde2pcd.jar java/biolegato-dev/BioLegato/src/BioPCD/build.xml java/biolegato-dev/BioLegato/src/BioPCD/parser/ java/biolegato-dev/BioLegato/src/BioPCD/parser/JJTPCDState.java java/biolegato-dev/BioLegato/src/BioPCD/parser/Node.java java/biolegato-dev/BioLegato/src/BioPCD/parser/PCDTreeConstants.java java/biolegato-dev/BioLegato/src/BioPCD/parser/SimpleNode.java java/biolegato-dev/BioLegato/src/BioPCD/parser/bin/ java/biolegato-dev/BioLegato/src/BioPCD/parser/bin/biopcd.jar java/biolegato-dev/BioLegato/src/BioPCD/parser/build.xml java/biolegato-dev/BioLegato/src/BioPCD/parser/build.xml~ java/biolegato-dev/BioLegato/src/BioPCD/parser/package.properties java/biolegato-dev/BioLegato/src/BioPCD/parser/src/ java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/ java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/ java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/icons/ java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/icons/checkbox.png java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/icons/choice_list.svg java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/icons/choicelist.png java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/icons/chooser.png java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/icons/combobox.png java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/icons/commandbutton.png java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/icons/dirchooser.png java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/icons/filechooser.png java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/icons/numberwidget.png java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/icons/panelwidget.png java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/icons/tabbedwidget.png java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/icons/tempfile.png java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/icons/textwidget.png java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/parser/ java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/parser/CommandThread.java java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/parser/CommandThread.java.v1.02 java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/parser/PCDIO.java java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/parser/PCDIO.java.1.0.4.bak1 java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/parser/PCDIO.java~ java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/parser/PCDMenuVisitor java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/parser/PCDMenuVisitor~ java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/parser/PCDObject.java java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/parser/PreProcess.java java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/parser/PreProcess.java.bak1 java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/parser/RunWindow.java java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/parser/StreamCopier.java java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/parser/SystemToken.java java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/parser/pcd.jj.v1.0.4.bak1 java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/parser/pcd.jj.v1.0.4.bak2 java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/parser/pcd.jjt java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/parser/pcd.jjt.1.0.5.1 java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/parser/pcd.jjt.bak1 java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/parser/pcd.jjt.old java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/parser/pcd.jjt~ java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/parser/pcd.jj~ java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/parser/pcd.v1.1.1.jjt.bak java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/sql/ java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/sql/JDBCDBConnection.java java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/sql/PCDSQL.java java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/widgets/ java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/widgets/AbstractFileChooser.java java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/widgets/ChoiceList.java java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/widgets/Chooser.java java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/widgets/CloseableWindow.java java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/widgets/ComboBoxWidget.java java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/widgets/CommandButton.java java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/widgets/DirectoryChooser.java java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/widgets/FileChooser.java java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/widgets/ListWidget.java java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/widgets/NumberWidget.java java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/widgets/PanelWidget.java java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/widgets/SimpleWidget.java java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/widgets/TabbedWidget.java java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/widgets/TempFile.java java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/widgets/TempFile.java.1.0.4.bak2 java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/widgets/TempFile.java.bak1 java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/widgets/TempFile.java.bak2 java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/widgets/TempFile.java~ java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/widgets/TextAreaWidget.java java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/widgets/TextWidget.java java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/widgets/Widget.java java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/widgets/WidgetGenerator.java java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/widgets/WidgetInstance.java java/biolegato-dev/BioLegato/src/BioPCD/parser/src/org/biopcd/widgets/WidgetTransferHandler.java java/biolegato-dev/BioLegato/src/Canvases/ java/biolegato-dev/BioLegato/src/Canvases/.DS_Store java/biolegato-dev/BioLegato/src/Canvases/BioPCDEditor/ java/biolegato-dev/BioLegato/src/Canvases/BioPCDEditor/.DS_Store java/biolegato-dev/BioLegato/src/Canvases/BioPCDEditor/.cvsignore java/biolegato-dev/BioLegato/src/Canvases/BioPCDEditor/README.txt java/biolegato-dev/BioLegato/src/Canvases/BioPCDEditor/bin/ java/biolegato-dev/BioLegato/src/Canvases/BioPCDEditor/bin/biopcdedit.jar java/biolegato-dev/BioLegato/src/Canvases/BioPCDEditor/build.old java/biolegato-dev/BioLegato/src/Canvases/BioPCDEditor/build.xml java/biolegato-dev/BioLegato/src/Canvases/BioPCDEditor/package.properties java/biolegato-dev/BioLegato/src/Canvases/BioPCDEditor/src/ java/biolegato-dev/BioLegato/src/Canvases/BioPCDEditor/src/.DS_Store java/biolegato-dev/BioLegato/src/Canvases/BioPCDEditor/src/org/ java/biolegato-dev/BioLegato/src/Canvases/BioPCDEditor/src/org/.DS_Store java/biolegato-dev/BioLegato/src/Canvases/BioPCDEditor/src/org/biopcd/ java/biolegato-dev/BioLegato/src/Canvases/BioPCDEditor/src/org/biopcd/editor/ java/biolegato-dev/BioLegato/src/Canvases/BioPCDEditor/src/org/biopcd/editor/.DS_Store java/biolegato-dev/BioLegato/src/Canvases/BioPCDEditor/src/org/biopcd/editor/MenuCanvas.java java/biolegato-dev/BioLegato/src/Canvases/BioPCDEditor/src/org/biopcd/editor/MenuWidgetsPanel.java java/biolegato-dev/BioLegato/src/Canvases/BioPCDEditor/src/org/biopcd/editor/PCDEditor.java java/biolegato-dev/BioLegato/src/Canvases/BioPCDEditor/src/org/biopcd/editor/PCDEditor.java.1.0.3.bak1 java/biolegato-dev/BioLegato/src/Canvases/BioPCDEditor/src/org/biopcd/editor/PCDEditor.java~ java/biolegato-dev/BioLegato/src/Canvases/BioPCDEditor/src/org/biopcd/editor/PanelWidgetGenerator.java java/biolegato-dev/BioLegato/src/Canvases/Images/ java/biolegato-dev/BioLegato/src/Canvases/Images/.cvsignore java/biolegato-dev/BioLegato/src/Canvases/Images/bin/ java/biolegato-dev/BioLegato/src/Canvases/Images/bin/image.jar java/biolegato-dev/BioLegato/src/Canvases/Images/build.old java/biolegato-dev/BioLegato/src/Canvases/Images/build.xml java/biolegato-dev/BioLegato/src/Canvases/Images/package.properties java/biolegato-dev/BioLegato/src/Canvases/Images/src/ java/biolegato-dev/BioLegato/src/Canvases/Images/src/org/ java/biolegato-dev/BioLegato/src/Canvases/Images/src/org/biolegato/ java/biolegato-dev/BioLegato/src/Canvases/Images/src/org/biolegato/images/ java/biolegato-dev/BioLegato/src/Canvases/Images/src/org/biolegato/images/ImageCanvas.java java/biolegato-dev/BioLegato/src/Canvases/Images/src/org/biolegato/images/ImageCanvas.java.1.0.3.bak1 java/biolegato-dev/BioLegato/src/Canvases/Images/src/org/biolegato/images/ImageCanvas.java~ java/biolegato-dev/BioLegato/src/Canvases/Sequence/ java/biolegato-dev/BioLegato/src/Canvases/Sequence/.cvsignore java/biolegato-dev/BioLegato/src/Canvases/Sequence/bin/ java/biolegato-dev/BioLegato/src/Canvases/Sequence/bin/sequence.jar java/biolegato-dev/BioLegato/src/Canvases/Sequence/build.old java/biolegato-dev/BioLegato/src/Canvases/Sequence/build.xml java/biolegato-dev/BioLegato/src/Canvases/Sequence/package.properties java/biolegato-dev/BioLegato/src/Canvases/Sequence/src/ java/biolegato-dev/BioLegato/src/Canvases/Sequence/src/org/ java/biolegato-dev/BioLegato/src/Canvases/Sequence/src/org/biolegato/ java/biolegato-dev/BioLegato/src/Canvases/Sequence/src/org/biolegato/sequence/ java/biolegato-dev/BioLegato/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/ java/biolegato-dev/BioLegato/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/ColourMask.java java/biolegato-dev/BioLegato/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/SequenceCanvas.java java/biolegato-dev/BioLegato/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/SequenceCanvas.java.bak1 java/biolegato-dev/BioLegato/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/SequenceCanvas.java~ java/biolegato-dev/BioLegato/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/SequenceCanvasObject.java java/biolegato-dev/BioLegato/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/SequenceCanvasProperties.java java/biolegato-dev/BioLegato/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/SequenceList.java java/biolegato-dev/BioLegato/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/SequenceTextArea.java java/biolegato-dev/BioLegato/src/Canvases/Sequence/src/org/biolegato/sequence/data/ java/biolegato-dev/BioLegato/src/Canvases/Sequence/src/org/biolegato/sequence/data/DataFormat.java java/biolegato-dev/BioLegato/src/Canvases/Sequence/src/org/biolegato/sequence/data/DataFormat.java~ java/biolegato-dev/BioLegato/src/Canvases/Sequence/src/org/biolegato/sequence/data/Dataset.java java/biolegato-dev/BioLegato/src/Canvases/Sequence/src/org/biolegato/sequence/data/Dataset.java~ java/biolegato-dev/BioLegato/src/Canvases/Sequence/src/org/biolegato/sequence/data/FastAFile.java java/biolegato-dev/BioLegato/src/Canvases/Sequence/src/org/biolegato/sequence/data/FastAFile.java~ java/biolegato-dev/BioLegato/src/Canvases/Sequence/src/org/biolegato/sequence/data/GDEFile.java java/biolegato-dev/BioLegato/src/Canvases/Sequence/src/org/biolegato/sequence/data/GDEFile.java~ java/biolegato-dev/BioLegato/src/Canvases/Sequence/src/org/biolegato/sequence/data/GDEFlatfile.java java/biolegato-dev/BioLegato/src/Canvases/Sequence/src/org/biolegato/sequence/data/GDEFlatfile.java~ java/biolegato-dev/BioLegato/src/Canvases/Sequence/src/org/biolegato/sequence/data/GenBankFile2008.java java/biolegato-dev/BioLegato/src/Canvases/Sequence/src/org/biolegato/sequence/data/GenBankFile2008.java~ java/biolegato-dev/BioLegato/src/Canvases/Sequence/src/org/biolegato/sequence/data/Seq.java java/biolegato-dev/BioLegato/src/Canvases/Sequence/src/org/biolegato/sequence/data/Seq.java~ java/biolegato-dev/BioLegato/src/Canvases/Sequence/src/org/biolegato/sequence/data/SequenceWindow.java java/biolegato-dev/BioLegato/src/Canvases/Sequence/src/org/biolegato/sequence/data/SequenceWindow.java~ java/biolegato-dev/BioLegato/src/Canvases/Tables/ java/biolegato-dev/BioLegato/src/Canvases/Tables/.cvsignore java/biolegato-dev/BioLegato/src/Canvases/Tables/bin/ java/biolegato-dev/BioLegato/src/Canvases/Tables/bin/table.jar java/biolegato-dev/BioLegato/src/Canvases/Tables/build.old java/biolegato-dev/BioLegato/src/Canvases/Tables/build.xml java/biolegato-dev/BioLegato/src/Canvases/Tables/package.properties java/biolegato-dev/BioLegato/src/Canvases/Tables/src/ java/biolegato-dev/BioLegato/src/Canvases/Tables/src/org/ java/biolegato-dev/BioLegato/src/Canvases/Tables/src/org/biolegato/ java/biolegato-dev/BioLegato/src/Canvases/Tables/src/org/biolegato/tables/ java/biolegato-dev/BioLegato/src/Canvases/Tables/src/org/biolegato/tables/CSVFile.jj java/biolegato-dev/BioLegato/src/Canvases/Tables/src/org/biolegato/tables/CSVFile.jj.1.0.4.bak1 java/biolegato-dev/BioLegato/src/Canvases/Tables/src/org/biolegato/tables/CSVFile.jj.1.0.4.bak2 java/biolegato-dev/BioLegato/src/Canvases/Tables/src/org/biolegato/tables/CSVFile.jj.1.0.4.bak3 java/biolegato-dev/BioLegato/src/Canvases/Tables/src/org/biolegato/tables/CSVFile.jj~ java/biolegato-dev/BioLegato/src/Canvases/Tables/src/org/biolegato/tables/RowHeaderRenderer.java java/biolegato-dev/BioLegato/src/Canvases/Tables/src/org/biolegato/tables/TSVFile.jj java/biolegato-dev/BioLegato/src/Canvases/Tables/src/org/biolegato/tables/TSVFile.jj.1.0.4.bak1 java/biolegato-dev/BioLegato/src/Canvases/Tables/src/org/biolegato/tables/TSVFile.jj.1.0.4.bak2 java/biolegato-dev/BioLegato/src/Canvases/Tables/src/org/biolegato/tables/TSVFile.jj~ java/biolegato-dev/BioLegato/src/Canvases/Tables/src/org/biolegato/tables/TableCanvas.java java/biolegato-dev/BioLegato/src/Canvases/Tables/src/org/biolegato/tables/TableCanvas.java.1.0.4.bak1 java/biolegato-dev/BioLegato/src/Canvases/Tables/src/org/biolegato/tables/TableCanvas.java.1.0.4.bak2 java/biolegato-dev/BioLegato/src/Canvases/Tables/src/org/biolegato/tables/TableCanvas.java.1.0.4.fix1 java/biolegato-dev/BioLegato/src/Canvases/Tables/src/org/biolegato/tables/TableCanvas.java.bak2 java/biolegato-dev/BioLegato/src/Canvases/Tables/src/org/biolegato/tables/TableCanvas.java~ java/biolegato-dev/BioLegato/src/Canvases/Tables/src/org/biolegato/tables/TableCanvasProperties.java java/biolegato-dev/BioLegato/src/Canvases/Tables/src/org/biolegato/tables/TableRowModel.java java/biolegato-dev/BioLegato/src/Canvases/Tables/src/org/biolegato/tables/TSVFile.jj.1.1.0.bak1 java/biolegato-dev/BioLegato/src/Canvases/Tables/src/org/biolegato/tables/CSVFile.jj.1.1.0.bak1 java/biolegato-dev/BioLegato/src/Canvases/bin/ java/biolegato-dev/BioLegato/src/Canvases/bin/sequence.jar java/biolegato-dev/BioLegato/src/Canvases/bin/table.jar java/biolegato-dev/BioLegato/src/Canvases/bin/image.jar java/biolegato-dev/BioLegato/src/Canvases/bin/pcdcanvas.jar java/biolegato-dev/BioLegato/src/Canvases/bin/biopcdedit.jar java/biolegato-dev/BioLegato/src/Canvases/biopcd/ java/biolegato-dev/BioLegato/src/Canvases/biopcd/bin/ java/biolegato-dev/BioLegato/src/Canvases/biopcd/bin/pcdcanvas.jar java/biolegato-dev/BioLegato/src/Canvases/biopcd/build.xml java/biolegato-dev/BioLegato/src/Canvases/biopcd/package.properties java/biolegato-dev/BioLegato/src/Canvases/biopcd/src/ java/biolegato-dev/BioLegato/src/Canvases/biopcd/src/org/ java/biolegato-dev/BioLegato/src/Canvases/biopcd/src/org/biopcd/ java/biolegato-dev/BioLegato/src/Canvases/biopcd/src/org/biopcd/canvas/ java/biolegato-dev/BioLegato/src/Canvases/biopcd/src/org/biopcd/canvas/PCDCanvas.java java/biolegato-dev/BioLegato/src/Canvases/biopcd/src/org/biopcd/canvas/PCDCanvas.java.1.0.3.bak1 java/biolegato-dev/BioLegato/src/Canvases/biopcd/src/org/biopcd/canvas/PCDCanvas.java~ java/biolegato-dev/BioLegato/src/Canvases/biopcd/src/org/biopcd/canvas/ValuesFile.jj java/biolegato-dev/BioLegato/src/Canvases/build.xml java/biolegato-dev/BioLegato/src/Canvases/dbpcd/ java/biolegato-dev/BioLegato/src/Canvases/dbpcd/bin/ java/biolegato-dev/BioLegato/src/Canvases/dbpcd/bin/dbcanvas.jar java/biolegato-dev/BioLegato/src/Canvases/dbpcd/bin/hsqldb.jar java/biolegato-dev/BioLegato/src/Canvases/dbpcd/build.xml java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/ java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/allclasses-frame.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/allclasses-noframe.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/constant-values.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/deprecated-list.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/help-doc.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/index-all.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/index.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/ java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/ java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/ java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/DBCanvas.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/DBPCD.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/DBPCDConstants.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/DBPCDTokenManager.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/DBSchema.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/EntriesListModel.Entry.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/EntriesListModel.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/JDBCDBConnection.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/PCDSQL.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/ParseException.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/SchemaListModel.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/SimpleCharStream.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/Token.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/TokenMgrError.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/ValuesFile.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/ValuesFileConstants.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/ValuesFileTokenManager.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/ java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/DBCanvas.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/DBPCD.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/DBPCDConstants.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/DBPCDTokenManager.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/DBSchema.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/EntriesListModel.Entry.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/EntriesListModel.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/JDBCDBConnection.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/PCDSQL.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/ParseException.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/SchemaListModel.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/SimpleCharStream.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/Token.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/TokenMgrError.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/ValuesFile.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/ValuesFileConstants.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/ValuesFileTokenManager.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/fields/ java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/fields/BooleanField.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/fields/DBCommand.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/fields/DBCommandThread.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/fields/DBField.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/fields/DBTextField.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/fields/DecimalField.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/fields/KeyableField.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/fields/NumberField.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/fields/ReferenceField.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/ java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/BooleanField.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/DBCommand.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/DBCommandThread.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/DBField.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/DBTextField.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/DecimalField.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/KeyableField.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/NumberField.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/ReferenceField.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/fields/package-frame.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/fields/package-summary.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/fields/package-tree.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/fields/package-use.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/package-frame.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/package-summary.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/package-tree.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/package-use.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/ java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/FieldGenerator.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/FieldTransferHandler.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/SchemaFieldsPanel.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/class-use/ java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/class-use/FieldGenerator.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/class-use/FieldTransferHandler.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/class-use/SchemaFieldsPanel.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/package-frame.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/package-summary.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/package-tree.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/package-use.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/overview-frame.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/overview-summary.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/overview-tree.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/package-list java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/resources/ java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/resources/background.gif java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/resources/tab.gif java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/resources/titlebar.gif java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/resources/titlebar_end.gif java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/serialized-form.html java/biolegato-dev/BioLegato/src/Canvases/dbpcd/docs/stylesheet.css java/biolegato-dev/BioLegato/src/Canvases/dbpcd/lib/ java/biolegato-dev/BioLegato/src/Canvases/dbpcd/lib/hsqldb.jar java/biolegato-dev/BioLegato/src/Canvases/dbpcd/package.properties java/biolegato-dev/BioLegato/src/Canvases/dbpcd/src/ java/biolegato-dev/BioLegato/src/Canvases/dbpcd/src/org/ java/biolegato-dev/BioLegato/src/Canvases/dbpcd/src/org/biolegato/ java/biolegato-dev/BioLegato/src/Canvases/dbpcd/src/org/biolegato/database/ java/biolegato-dev/BioLegato/src/Canvases/dbpcd/src/org/biolegato/database/DBCanvas.java java/biolegato-dev/BioLegato/src/Canvases/dbpcd/src/org/biolegato/database/DBSchema.java java/biolegato-dev/BioLegato/src/Canvases/dbpcd/src/org/biolegato/database/EntriesListModel.java java/biolegato-dev/BioLegato/src/Canvases/dbpcd/src/org/biolegato/database/JDBCDBConnection.java java/biolegato-dev/BioLegato/src/Canvases/dbpcd/src/org/biolegato/database/PCDSQL.java java/biolegato-dev/BioLegato/src/Canvases/dbpcd/src/org/biolegato/database/SchemaListModel.java java/biolegato-dev/BioLegato/src/Canvases/dbpcd/src/org/biolegato/database/ValuesFile.jj java/biolegato-dev/BioLegato/src/Canvases/dbpcd/src/org/biolegato/database/dbpcd.jj java/biolegato-dev/BioLegato/src/Canvases/dbpcd/src/org/biolegato/database/fields/ java/biolegato-dev/BioLegato/src/Canvases/dbpcd/src/org/biolegato/database/fields/BooleanField.java java/biolegato-dev/BioLegato/src/Canvases/dbpcd/src/org/biolegato/database/fields/DBCommand.java java/biolegato-dev/BioLegato/src/Canvases/dbpcd/src/org/biolegato/database/fields/DBCommandThread.java java/biolegato-dev/BioLegato/src/Canvases/dbpcd/src/org/biolegato/database/fields/DBField.java java/biolegato-dev/BioLegato/src/Canvases/dbpcd/src/org/biolegato/database/fields/DBTextField.java java/biolegato-dev/BioLegato/src/Canvases/dbpcd/src/org/biolegato/database/fields/DecimalField.java java/biolegato-dev/BioLegato/src/Canvases/dbpcd/src/org/biolegato/database/fields/KeyableField.java java/biolegato-dev/BioLegato/src/Canvases/dbpcd/src/org/biolegato/database/fields/NumberField.java java/biolegato-dev/BioLegato/src/Canvases/dbpcd/src/org/biolegato/database/fields/ReferenceField.java java/biolegato-dev/BioLegato/src/Canvases/dbpcd/src/org/biolegato/database/schemaeditor/ java/biolegato-dev/BioLegato/src/Canvases/dbpcd/src/org/biolegato/database/schemaeditor/FieldGenerator.java java/biolegato-dev/BioLegato/src/Canvases/dbpcd/src/org/biolegato/database/schemaeditor/FieldTransferHandler.java java/biolegato-dev/BioLegato/src/Canvases/dbpcd/src/org/biolegato/database/schemaeditor/SchemaFieldsPanel.java java/biolegato-dev/BioLegato/src/Core/ java/biolegato-dev/BioLegato/src/Core/.DS_Store java/biolegato-dev/BioLegato/src/Core/.cvsignore java/biolegato-dev/BioLegato/src/Core/bin/ java/biolegato-dev/BioLegato/src/Core/bin/biolegato.jar java/biolegato-dev/BioLegato/src/Core/build.old java/biolegato-dev/BioLegato/src/Core/build.xml java/biolegato-dev/BioLegato/src/Core/package.properties java/biolegato-dev/BioLegato/src/Core/pcd.xml java/biolegato-dev/BioLegato/src/Core/src/ java/biolegato-dev/BioLegato/src/Core/src/.DS_Store java/biolegato-dev/BioLegato/src/Core/src/default.properties java/biolegato-dev/BioLegato/src/Core/src/manpage.txt java/biolegato-dev/BioLegato/src/Core/src/optionlist.txt java/biolegato-dev/BioLegato/src/Core/src/org/ java/biolegato-dev/BioLegato/src/Core/src/org/.DS_Store java/biolegato-dev/BioLegato/src/Core/src/org/biolegato/ java/biolegato-dev/BioLegato/src/Core/src/org/biolegato/.DS_Store java/biolegato-dev/BioLegato/src/Core/src/org/biolegato/main/ java/biolegato-dev/BioLegato/src/Core/src/org/biolegato/main/BLMain.java java/biolegato-dev/BioLegato/src/Core/src/org/biolegato/main/BLMain.java.1.0.5.1.bak1 java/biolegato-dev/BioLegato/src/Core/src/org/biolegato/main/DataCanvas.java java/biolegato-dev/BioLegato/src/Core/src/org/biolegato/main/PluginLoader.java java/biolegato-dev/BioLegato/src/Core/src/org/biolegato/main/PluginWrapper.java java/biolegato-dev/BioLegato/src/Core/src/org/biolegato/main/StreamCopier.java java/biolegato-dev/BioLegato/src/README.txt java/biolegato-dev/BioLegato/src/Turtle/ java/biolegato-dev/BioLegato/src/Turtle/bin/ java/biolegato-dev/BioLegato/src/Turtle/bin/turtle.jar java/biolegato-dev/BioLegato/src/Turtle/build.old java/biolegato-dev/BioLegato/src/Turtle/build.xml java/biolegato-dev/BioLegato/src/Turtle/lib/ java/biolegato-dev/BioLegato/src/Turtle/lib/ant-contrib.jar java/biolegato-dev/BioLegato/src/Turtle/lib/ant-junit.jar java/biolegato-dev/BioLegato/src/Turtle/lib/javacc.jar java/biolegato-dev/BioLegato/src/Turtle/lib/junit-3.8.1.jar java/biolegato-dev/BioLegato/src/Turtle/lib/junit-4.9.jar java/biolegato-dev/BioLegato/src/Turtle/lib/junit.jar java/biolegato-dev/BioLegato/src/Turtle/lib/makeman.sh java/biolegato-dev/BioLegato/src/Turtle/package.properties java/biolegato-dev/BioLegato/src/Turtle/selfbuild.xml java/biolegato-dev/BioLegato/src/Turtle/src/ java/biolegato-dev/BioLegato/src/Turtle/src/manpages/ java/biolegato-dev/BioLegato/src/Turtle/src/manpages/CAT.man java/biolegato-dev/BioLegato/src/Turtle/src/manpages/CD.man java/biolegato-dev/BioLegato/src/Turtle/src/manpages/COMMANDS.man java/biolegato-dev/BioLegato/src/Turtle/src/manpages/CP.man java/biolegato-dev/BioLegato/src/Turtle/src/manpages/CUT.man java/biolegato-dev/BioLegato/src/Turtle/src/manpages/DATE.man java/biolegato-dev/BioLegato/src/Turtle/src/manpages/ECHO.man java/biolegato-dev/BioLegato/src/Turtle/src/manpages/EXPR.man java/biolegato-dev/BioLegato/src/Turtle/src/manpages/FGREP.man java/biolegato-dev/BioLegato/src/Turtle/src/manpages/GREP.man java/biolegato-dev/BioLegato/src/Turtle/src/manpages/HEAD.man java/biolegato-dev/BioLegato/src/Turtle/src/manpages/MAN.man java/biolegato-dev/BioLegato/src/Turtle/src/manpages/MKDIRS.man java/biolegato-dev/BioLegato/src/Turtle/src/manpages/MV.man java/biolegato-dev/BioLegato/src/Turtle/src/manpages/PASTE.man java/biolegato-dev/BioLegato/src/Turtle/src/manpages/PWD.man java/biolegato-dev/BioLegato/src/Turtle/src/manpages/REV.man java/biolegato-dev/BioLegato/src/Turtle/src/manpages/RM.man java/biolegato-dev/BioLegato/src/Turtle/src/manpages/RSORT.man java/biolegato-dev/BioLegato/src/Turtle/src/manpages/SORT.man java/biolegato-dev/BioLegato/src/Turtle/src/manpages/SYNTAX.man java/biolegato-dev/BioLegato/src/Turtle/src/manpages/TAIL.man java/biolegato-dev/BioLegato/src/Turtle/src/manpages/TR.man java/biolegato-dev/BioLegato/src/Turtle/src/manpages/UNIQ.man java/biolegato-dev/BioLegato/src/Turtle/src/manpages/WC.man java/biolegato-dev/BioLegato/src/Turtle/src/org/ java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/ java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/StreamCopier.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/TEnv.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/TurtleFileWriter.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/cmd/ java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/cmd/.cvsignore java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/cmd/.man java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/cmd/CAT.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/cmd/CD.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/cmd/CP.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/cmd/CUT.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/cmd/DATE.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/cmd/ECHO.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/cmd/EXPR.jj java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/cmd/FGREP.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/cmd/GREP.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/cmd/HEAD.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/cmd/MAN.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/cmd/MKDIRS.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/cmd/MV.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/cmd/PASTE.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/cmd/PWD.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/cmd/REV.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/cmd/RM.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/cmd/RSORT.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/cmd/SED.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/cmd/SED.man java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/cmd/SORT.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/cmd/TAC.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/cmd/TAIL.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/cmd/TEST.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/cmd/TR.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/cmd/UNIQ.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/cmd/WC.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/strings/ java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/strings/DoubleExecString.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/strings/ShellString.jj java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/strings/TString.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/tasks/ java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/tasks/AndTask.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/tasks/Command.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/tasks/DualTask.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/tasks/IfTask.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/tasks/LogicTask.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/tasks/OrTask.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/tasks/SequentialTask.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/tasks/TTask.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/tasks/WhileTask.java java/biolegato-dev/BioLegato/src/Turtle/src/org/turtleshell/turtle.jj java/biolegato-dev/BioLegato/src/ants.properties java/biolegato-dev/BioLegato/src/applet_work/ java/biolegato-dev/BioLegato/src/applet_work/image.html java/biolegato-dev/BioLegato/src/applet_work/list.html java/biolegato-dev/BioLegato/src/applet_work/pcdcanvas.html java/biolegato-dev/BioLegato/src/applet_work/sequence.html java/biolegato-dev/BioLegato/src/applet_work/sequence.jnlp java/biolegato-dev/BioLegato/src/applet_work/table.html java/biolegato-dev/BioLegato/src/bin/ java/biolegato-dev/BioLegato/src/bin/biopcd.jar java/biolegato-dev/BioLegato/src/bin/gde2pcd.jar java/biolegato-dev/BioLegato/src/bin/biolegato.jar java/biolegato-dev/BioLegato/src/bin/biopcdedit.jar java/biolegato-dev/BioLegato/src/bin/image.jar java/biolegato-dev/BioLegato/src/bin/pcdcanvas.jar java/biolegato-dev/BioLegato/src/bin/sequence.jar java/biolegato-dev/BioLegato/src/bin/table.jar java/biolegato-dev/BioLegato/src/biolegato java/biolegato-dev/BioLegato/src/build.old java/biolegato-dev/BioLegato/src/build.xml java/biolegato-dev/BioLegato/src/gde2pcd.sh java/biolegato-dev/BioLegato/src/gde2pcd.txt java/biolegato-dev/BioLegato/src/lib/ java/biolegato-dev/BioLegato/src/lib/ant-contrib.jar java/biolegato-dev/BioLegato/src/lib/ant-junit.jar java/biolegato-dev/BioLegato/src/lib/javacc.jar java/biolegato-dev/BioLegato/src/lib/junit-3.8.1.jar java/biolegato-dev/BioLegato/src/lib/junit-4.9.jar java/biolegato-dev/BioLegato/src/lib/junit.jar java/biolegato-dev/BioLegato/src/lib/makeman.sh java/biolegato-dev/BioLegato/src/nbproject/ java/biolegato-dev/BioLegato/src/nbproject/.cvsignore java/biolegato-dev/BioLegato/src/nbproject/genfiles.properties java/biolegato-dev/BioLegato/src/nbproject/jdk.xml java/biolegato-dev/BioLegato/src/nbproject/nbjdk.properties java/biolegato-dev/BioLegato/src/nbproject/nbjdk.xml java/biolegato-dev/BioLegato/src/nbproject/private/ java/biolegato-dev/BioLegato/src/nbproject/private/private.xml java/biolegato-dev/BioLegato/src/nbproject/private/private.xml.0.nblh~ java/biolegato-dev/BioLegato/src/nbproject/project.xml java/biolegato-dev/BioLegato/src/nbproject/project.xml~ java/biolegato-dev/BioLegato/src/nbproject/ide-file-targets.xml java/biolegato-dev/BioLegato/src/test/ java/biolegato-dev/BioLegato/src/test/all.CDS.gde java/biolegato-dev/BioLegato/src/test/all.gen java/biolegato-dev/BioLegato/src/test/all.pro.fsa java/biolegato-dev/BioLegato/src/test/birch_white.png java/biolegato-dev/BioLegato/src/test/columntest.csv java/biolegato-dev/BioLegato/src/test/columntest2.csv java/biolegato-dev/BioLegato/src/test/standard_dna.csv java/biolegato-dev/BioLegato/src/test/supertest.gen java/biolegato-dev/BioLegato/src/test/test.blimg java/biolegato-dev/BioLegato/src/test/test.flat java/biolegato-dev/BioLegato/src/test/tiger1.jpg java/biolegato-dev/BioLegato/src/todo.txt java/biolegato-dev/BioLegato/table.jar java/biolegato-dev/BioLegato/test/ java/biolegato-dev/BioLegato/test/README.txt java/biolegato-dev/BioLegato/test/admin/ java/biolegato-dev/BioLegato/test/admin/README.txt java/biolegato-dev/BioLegato/test/admin/setblenv.profile.linux-x86_64.source java/biolegato-dev/BioLegato/test/admin/setblenv.profile.osx-x86_64.source java/biolegato-dev/BioLegato/test/bin-linux-x86_64/ java/biolegato-dev/BioLegato/test/bin-linux-x86_64/README.txt java/biolegato-dev/BioLegato/test/bin-osx-x86_64/ java/biolegato-dev/BioLegato/test/bin-osx-x86_64/README.txt java/biolegato-dev/BioLegato/test/blfiles java/biolegato-dev/BioLegato/test/bltable java/biolegato-dev/BioLegato/test/dat/ java/biolegato-dev/BioLegato/test/dat/README.txt java/biolegato-dev/BioLegato/test/dat/birch_black_ico.png java/biolegato-dev/BioLegato/test/dat/blfiles/ java/biolegato-dev/BioLegato/test/dat/blfiles/PCD/ java/biolegato-dev/BioLegato/test/dat/blfiles/PCD/Documentation/ java/biolegato-dev/BioLegato/test/dat/blfiles/PCD/Documentation/ViewDoc.blmenu java/biolegato-dev/BioLegato/test/dat/blfiles/PCD/Documentation/pcd_order java/biolegato-dev/BioLegato/test/dat/blfiles/PCD/Edit/ java/biolegato-dev/BioLegato/test/dat/blfiles/PCD/Edit/BLSORT.blmenu java/biolegato-dev/BioLegato/test/dat/blfiles/PCD/Edit/CopyOut.blmenu java/biolegato-dev/BioLegato/test/dat/blfiles/PCD/Edit/Extract.blmenu java/biolegato-dev/BioLegato/test/dat/blfiles/PCD/Edit/Extract.blmenu~ java/biolegato-dev/BioLegato/test/dat/blfiles/PCD/Edit/PasteIn.blmenu java/biolegato-dev/BioLegato/test/dat/blfiles/PCD/Edit/pcd_order java/biolegato-dev/BioLegato/test/dat/blfiles/PCD/File/ java/biolegato-dev/BioLegato/test/dat/blfiles/PCD/File/Compress.blmenu java/biolegato-dev/BioLegato/test/dat/blfiles/PCD/File/ConcatFiles.blmenu java/biolegato-dev/BioLegato/test/dat/blfiles/PCD/File/Decompress.blmenu java/biolegato-dev/BioLegato/test/dat/blfiles/PCD/File/DeleteFiles.blmenu java/biolegato-dev/BioLegato/test/dat/blfiles/PCD/File/Export.blmenu java/biolegato-dev/BioLegato/test/dat/blfiles/PCD/File/GetFiles.blmenu java/biolegato-dev/BioLegato/test/dat/blfiles/PCD/File/Makelinks.blmenu java/biolegato-dev/BioLegato/test/dat/blfiles/PCD/File/NewRow.blmenu java/biolegato-dev/BioLegato/test/dat/blfiles/PCD/File/OpenDir.blmenu java/biolegato-dev/BioLegato/test/dat/blfiles/PCD/File/ReName.blmenu java/biolegato-dev/BioLegato/test/dat/blfiles/PCD/File/Refresh.blmenu java/biolegato-dev/BioLegato/test/dat/blfiles/PCD/File/SaveSel.blmenu java/biolegato-dev/BioLegato/test/dat/blfiles/PCD/File/ShortNames.blmenu java/biolegato-dev/BioLegato/test/dat/blfiles/PCD/File/ViewFile.blmenu java/biolegato-dev/BioLegato/test/dat/blfiles/PCD/File/pcd_order java/biolegato-dev/BioLegato/test/dat/blfiles/PCD/pcd_order java/biolegato-dev/BioLegato/test/dat/blfiles/blfiles.properties java/biolegato-dev/BioLegato/test/dat/blfiles/seqcolors/ java/biolegato-dev/BioLegato/test/dat/blfiles/seqcolors/color_notes.txt java/biolegato-dev/BioLegato/test/dat/blfiles/seqcolors/default.csv java/biolegato-dev/BioLegato/test/dat/blfiles/seqcolors/standard_marker.csv java/biolegato-dev/BioLegato/test/dat/blfiles/seqcolors/~color_notes.txt java/biolegato-dev/BioLegato/test/dat/blgeneric/ java/biolegato-dev/BioLegato/test/dat/blgeneric/birch.properties~ java/biolegato-dev/BioLegato/test/dat/blgeneric/blank.obj.bak java/biolegato-dev/BioLegato/test/dat/blgeneric/blank.png java/biolegato-dev/BioLegato/test/dat/blgeneric/blgeneric.properties java/biolegato-dev/BioLegato/test/dat/blgeneric/ldir.param~ java/biolegato-dev/BioLegato/test/dat/blgeneric/splash.blimg java/biolegato-dev/BioLegato/test/dat/bltable/ java/biolegato-dev/BioLegato/test/dat/bltable/PCD/ java/biolegato-dev/BioLegato/test/dat/bltable/PCD/Documentation/ java/biolegato-dev/BioLegato/test/dat/bltable/PCD/Documentation/ViewDoc.blmenu java/biolegato-dev/BioLegato/test/dat/bltable/PCD/Documentation/pcd_order java/biolegato-dev/BioLegato/test/dat/bltable/PCD/Edit/ java/biolegato-dev/BioLegato/test/dat/bltable/PCD/Edit/BLSORT.blmenu java/biolegato-dev/BioLegato/test/dat/bltable/PCD/Edit/CopyOut.blmenu java/biolegato-dev/BioLegato/test/dat/bltable/PCD/Edit/Extract.blmenu java/biolegato-dev/BioLegato/test/dat/bltable/PCD/Edit/PasteIn.blmenu java/biolegato-dev/BioLegato/test/dat/bltable/PCD/Edit/pcd_order java/biolegato-dev/BioLegato/test/dat/bltable/PCD/File/ java/biolegato-dev/BioLegato/test/dat/bltable/PCD/File/Export.blmenu java/biolegato-dev/BioLegato/test/dat/bltable/PCD/File/Extract.blmenu java/biolegato-dev/BioLegato/test/dat/bltable/PCD/File/ImportCSV.blmenu java/biolegato-dev/BioLegato/test/dat/bltable/PCD/File/NewRows.blmenu java/biolegato-dev/BioLegato/test/dat/bltable/PCD/File/NewWindow.blmenu java/biolegato-dev/BioLegato/test/dat/bltable/PCD/File/PasteCSV.blmenu java/biolegato-dev/BioLegato/test/dat/bltable/PCD/File/PasteTSV.blmenu java/biolegato-dev/BioLegato/test/dat/bltable/PCD/File/PrintCSV.blmenu java/biolegato-dev/BioLegato/test/dat/bltable/PCD/File/PrintTSV.blmenu java/biolegato-dev/BioLegato/test/dat/bltable/PCD/File/SaveAs.blmenu java/biolegato-dev/BioLegato/test/dat/bltable/PCD/File/pcd_order java/biolegato-dev/BioLegato/test/dat/bltable/PCD/Help java/biolegato-dev/BioLegato/test/dat/bltable/PCD/pcd_order java/biolegato-dev/BioLegato/test/dat/bltable/bltable.properties java/biolegato-dev/BioLegato/test/dat/bltable/bltable.properties~ java/biolegato-dev/BioLegato/test/dat/bltable/sample_data/ java/biolegato-dev/BioLegato/test/dat/bltable/sample_data/bltable_example.tsv java/biolegato-dev/BioLegato/test/dat/bltable/seqcolors/ java/biolegato-dev/BioLegato/test/dat/bltable/seqcolors/color_notes.txt java/biolegato-dev/BioLegato/test/dat/bltable/seqcolors/default.csv java/biolegato-dev/BioLegato/test/dat/bltable/seqcolors/standard_marker.csv java/biolegato-dev/BioLegato/test/dat/bltable/seqcolors/~color_notes.txt java/biolegato-dev/BioLegato/test/doc/ java/biolegato-dev/BioLegato/test/doc/README.txt java/biolegato-dev/BioLegato/test/doc/bioLegato/ java/biolegato-dev/BioLegato/test/doc/bioLegato/bl_alias.html java/biolegato-dev/BioLegato/test/doc/bioLegato/bl_compress.html java/biolegato-dev/BioLegato/test/doc/bioLegato/bl_decompress.html java/biolegato-dev/BioLegato/test/doc/bioLegato/bl_deletefiles.html java/biolegato-dev/BioLegato/test/doc/bioLegato/bl_makelinks.html java/biolegato-dev/BioLegato/test/doc/bioLegato/bl_rename.html java/biolegato-dev/BioLegato/test/doc/bioLegato/blsort.html java/biolegato-dev/BioLegato/test/doc/bioLegato/chooseviewer.html java/biolegato-dev/BioLegato/test/java/ java/biolegato-dev/BioLegato/test/java/bioLegato/ java/biolegato-dev/BioLegato/test/java/bioLegato/biolegato.jar java/biolegato-dev/BioLegato/test/java/bioLegato/biopcd.jar java/biolegato-dev/BioLegato/test/java/bioLegato/table.jar java/biolegato-dev/BioLegato/test/local/ java/biolegato-dev/BioLegato/test/local/README.txt java/biolegato-dev/BioLegato/test/local/dat/ java/biolegato-dev/BioLegato/test/local/dat/blfiles/ java/biolegato-dev/BioLegato/test/local/dat/blfiles/PCD/ java/biolegato-dev/BioLegato/test/local/dat/blfiles/PCD/File/ java/biolegato-dev/BioLegato/test/local/dat/blfiles/PCD/File/Grep.blmenu.example java/biolegato-dev/BioLegato/test/script/ java/biolegato-dev/BioLegato/test/script/ConfirmBox2.jar java/biolegato-dev/BioLegato/test/script/DirChooser2.jar java/biolegato-dev/BioLegato/test/script/ErrorBox2.jar java/biolegato-dev/BioLegato/test/script/OkayBox2.jar java/biolegato-dev/BioLegato/test/script/README.txt java/biolegato-dev/BioLegato/test/script/__pycache__/ java/biolegato-dev/BioLegato/test/script/__pycache__/browser.cpython-36.pyc java/biolegato-dev/BioLegato/test/script/bl_alias.py java/biolegato-dev/BioLegato/test/script/bl_compress.sh java/biolegato-dev/BioLegato/test/script/bl_decompress.sh java/biolegato-dev/BioLegato/test/script/bl_deletefiles.sh java/biolegato-dev/BioLegato/test/script/bl_email.py java/biolegato-dev/BioLegato/test/script/bl_rename.py java/biolegato-dev/BioLegato/test/script/bldirtab.py java/biolegato-dev/BioLegato/test/script/blfiles java/biolegato-dev/BioLegato/test/script/blsort.py java/biolegato-dev/BioLegato/test/script/bltable java/biolegato-dev/BioLegato/test/script/bltsv2name.py java/biolegato-dev/BioLegato/test/script/browser.py java/biolegato-dev/BioLegato/test/script/chooseviewer.py java/biolegato-dev/BioLegato/test/script/makelinks.sh java/biolegato-dev/BioLegato/test/bin-macos-arm64/ java/biolegato-dev/BioLegato/test/bin-macos-arm64/README.txt java/artemis.17.0.1/ java/artemis.17.0.1/artemis_sqlmap/ java/artemis.17.0.1/artemis_sqlmap/chado_iBatis_config.properties java/artemis.17.0.1/artemis_sqlmap/Analysis.xml java/artemis.17.0.1/artemis_sqlmap/AnalysisFeature.xml java/artemis.17.0.1/artemis_sqlmap/Cv.xml java/artemis.17.0.1/artemis_sqlmap/CvTerm.xml java/artemis.17.0.1/artemis_sqlmap/Db.xml java/artemis.17.0.1/artemis_sqlmap/DbXRef.xml java/artemis.17.0.1/artemis_sqlmap/Feature.xml java/artemis.17.0.1/artemis_sqlmap/FeatureCvTerm.xml java/artemis.17.0.1/artemis_sqlmap/FeatureCvTermDbXRef.xml java/artemis.17.0.1/artemis_sqlmap/FeatureCvTermProp.xml java/artemis.17.0.1/artemis_sqlmap/FeatureCvTermPub.xml java/artemis.17.0.1/artemis_sqlmap/FeatureDbXRef.xml java/artemis.17.0.1/artemis_sqlmap/FeatureLoc.xml java/artemis.17.0.1/artemis_sqlmap/FeatureProp.xml java/artemis.17.0.1/artemis_sqlmap/FeaturePub.xml java/artemis.17.0.1/artemis_sqlmap/FeatureRelationship.xml java/artemis.17.0.1/artemis_sqlmap/FeatureSynonym.xml java/artemis.17.0.1/artemis_sqlmap/Graph.xml java/artemis.17.0.1/artemis_sqlmap/Organism.xml java/artemis.17.0.1/artemis_sqlmap/OrganismProp.xml java/artemis.17.0.1/artemis_sqlmap/Pub.xml java/artemis.17.0.1/artemis_sqlmap/PubDbXRef.xml java/artemis.17.0.1/artemis_sqlmap/Synonym.xml java/artemis.17.0.1/artemis_sqlmap/chado_iBatis_config.xml java/artemis.17.0.1/etc/ java/artemis.17.0.1/etc/af063097_v_b132222.crunch java/artemis.17.0.1/etc/af063097.embl java/artemis.17.0.1/etc/af063097.fasta java/artemis.17.0.1/etc/b132222.embl java/artemis.17.0.1/etc/b132222.fasta java/artemis.17.0.1/etc/c1215.blastn.crunch java/artemis.17.0.1/etc/c1215.blastn.tab java/artemis.17.0.1/etc/c1215.embl java/artemis.17.0.1/etc/c1215.genbank java/artemis.17.0.1/etc/c1215.seq java/artemis.17.0.1/etc/chado_extra.sql java/artemis.17.0.1/etc/feature_keys java/artemis.17.0.1/etc/feature_keys_gff java/artemis.17.0.1/etc/go_associations.pl java/artemis.17.0.1/etc/key_mapping java/artemis.17.0.1/etc/log4j.properties java/artemis.17.0.1/etc/log4j.properties.txt java/artemis.17.0.1/etc/options java/artemis.17.0.1/etc/pombe.usage java/artemis.17.0.1/etc/project.properties java/artemis.17.0.1/etc/qualifier_mapping java/artemis.17.0.1/etc/qualifier_types java/artemis.17.0.1/etc/qualifier_types_gff java/artemis.17.0.1/etc/readmeDNADraw.html java/artemis.17.0.1/etc/results_to_netscape java/artemis.17.0.1/etc/run_blastn java/artemis.17.0.1/etc/run_blastn.sanger java/artemis.17.0.1/etc/run_blastp java/artemis.17.0.1/etc/run_blastp.sanger java/artemis.17.0.1/etc/run_blastp.sanger.linux java/artemis.17.0.1/etc/run_blastx java/artemis.17.0.1/etc/run_blastx.sanger java/artemis.17.0.1/etc/run_clustalx java/artemis.17.0.1/etc/run_clustalx.sanger java/artemis.17.0.1/etc/run_fasta java/artemis.17.0.1/etc/run_fasta.sanger java/artemis.17.0.1/etc/run_fasta.sanger.linux java/artemis.17.0.1/etc/run_fastx java/artemis.17.0.1/etc/run_fastx.sanger java/artemis.17.0.1/etc/run_hth java/artemis.17.0.1/etc/run_jalview java/artemis.17.0.1/etc/run_netblastp java/artemis.17.0.1/etc/run_pepstats java/artemis.17.0.1/etc/run_sigcleave java/artemis.17.0.1/etc/run_smart java/artemis.17.0.1/etc/run_tblastn java/artemis.17.0.1/etc/run_tblastx java/artemis.17.0.1/etc/run_tblastx.sanger java/artemis.17.0.1/etc/versions java/artemis.17.0.1/etc/writedb_entry java/artemis.17.0.1/images/ java/artemis.17.0.1/images/Wellcome_Sanger_Institute_Logo_Landscape_Digital_RGB_Full_Colour.jpg java/artemis.17.0.1/images/icon.gif java/artemis.17.0.1/lib/ java/artemis.17.0.1/lib/batik/ java/artemis.17.0.1/lib/batik/batik-awt-util.jar java/artemis.17.0.1/lib/batik/batik-codec.jar java/artemis.17.0.1/lib/batik/batik-dom.jar java/artemis.17.0.1/lib/batik/batik-ext.jar java/artemis.17.0.1/lib/batik/batik-svggen.jar java/artemis.17.0.1/lib/batik/batik-util.jar java/artemis.17.0.1/lib/batik/batik-xml.jar java/artemis.17.0.1/lib/batik/version java/artemis.17.0.1/lib/ibatis/ java/artemis.17.0.1/lib/ibatis/README java/artemis.17.0.1/lib/ibatis/cglib-nodep-2.2.jar java/artemis.17.0.1/lib/ibatis/ibatis-2.3.4.726.jar java/artemis.17.0.1/lib/ibatis/license.txt java/artemis.17.0.1/lib/ibatis/log4j-1.2.14.jar java/artemis.17.0.1/lib/j2ssh/ java/artemis.17.0.1/lib/j2ssh/COMMONS.LICENSE java/artemis.17.0.1/lib/j2ssh/J2SSH.LICENSE java/artemis.17.0.1/lib/j2ssh/README java/artemis.17.0.1/lib/j2ssh/commons-logging.jar java/artemis.17.0.1/lib/j2ssh/j2ssh-artemis-plugin.jar java/artemis.17.0.1/lib/j2ssh/j2ssh-core.jar java/artemis.17.0.1/lib/j2ssh/j2ssh.properties java/artemis.17.0.1/lib/picard/ java/artemis.17.0.1/lib/picard/VERSION.txt java/artemis.17.0.1/lib/picard/picard.jar java/artemis.17.0.1/lib/postgresql-8.4-701.jdbc3.jar java/artemis.17.0.1/lib/LICENSE.Apache java/artemis.17.0.1/lib/LICENSE.JDBC java/artemis.17.0.1/lib/LICENSE.Picard java/artemis.17.0.1/lib/README java/artemis.17.0.1/lib/biojava.jar java/artemis.17.0.1/lib/commons-lang-2.6.jar java/artemis.17.0.1/lib/commons-net-3.6.jar java/artemis.17.0.1/lib/jakarta-regexp-1.2.jar java/artemis.17.0.1/lib/jemAlign.jar java/artemis.17.0.1/org/ java/artemis.17.0.1/org/gmod/ java/artemis.17.0.1/org/gmod/schema/ java/artemis.17.0.1/org/gmod/schema/analysis/ java/artemis.17.0.1/org/gmod/schema/analysis/Analysis.class java/artemis.17.0.1/org/gmod/schema/analysis/Analysis.java java/artemis.17.0.1/org/gmod/schema/analysis/AnalysisFeature.class java/artemis.17.0.1/org/gmod/schema/analysis/AnalysisFeature.java java/artemis.17.0.1/org/gmod/schema/analysis/AnalysisProp.class java/artemis.17.0.1/org/gmod/schema/analysis/AnalysisProp.java java/artemis.17.0.1/org/gmod/schema/cv/ java/artemis.17.0.1/org/gmod/schema/cv/Cv.class java/artemis.17.0.1/org/gmod/schema/cv/Cv.java java/artemis.17.0.1/org/gmod/schema/cv/CvTerm.class java/artemis.17.0.1/org/gmod/schema/cv/CvTerm.java java/artemis.17.0.1/org/gmod/schema/cv/CvTermDbXRef.class java/artemis.17.0.1/org/gmod/schema/cv/CvTermDbXRef.java java/artemis.17.0.1/org/gmod/schema/cv/CvTermPath.class java/artemis.17.0.1/org/gmod/schema/cv/CvTermPath.java java/artemis.17.0.1/org/gmod/schema/cv/CvTermProp.class java/artemis.17.0.1/org/gmod/schema/cv/CvTermProp.java java/artemis.17.0.1/org/gmod/schema/cv/CvTermRelationship.class java/artemis.17.0.1/org/gmod/schema/cv/CvTermRelationship.java java/artemis.17.0.1/org/gmod/schema/cv/CvTermSynonym.class java/artemis.17.0.1/org/gmod/schema/cv/CvTermSynonym.java java/artemis.17.0.1/org/gmod/schema/cv/DbXRefProp.class java/artemis.17.0.1/org/gmod/schema/cv/DbXRefProp.java java/artemis.17.0.1/org/gmod/schema/dao/ java/artemis.17.0.1/org/gmod/schema/dao/BaseDaoI.class java/artemis.17.0.1/org/gmod/schema/dao/BaseDaoI.java java/artemis.17.0.1/org/gmod/schema/dao/CvDaoI.class java/artemis.17.0.1/org/gmod/schema/dao/CvDaoI.java java/artemis.17.0.1/org/gmod/schema/dao/GeneralDaoI.class java/artemis.17.0.1/org/gmod/schema/dao/GeneralDaoI.java java/artemis.17.0.1/org/gmod/schema/dao/OrganismDaoI.class java/artemis.17.0.1/org/gmod/schema/dao/OrganismDaoI.java java/artemis.17.0.1/org/gmod/schema/dao/PhylogenyDaoI.java java/artemis.17.0.1/org/gmod/schema/dao/PubDaoI.class java/artemis.17.0.1/org/gmod/schema/dao/PubDaoI.java java/artemis.17.0.1/org/gmod/schema/dao/SchemaDaoI.class java/artemis.17.0.1/org/gmod/schema/dao/SchemaDaoI.java java/artemis.17.0.1/org/gmod/schema/dao/SequenceDaoI.class java/artemis.17.0.1/org/gmod/schema/dao/SequenceDaoI.java java/artemis.17.0.1/org/gmod/schema/general/ java/artemis.17.0.1/org/gmod/schema/general/Db.class java/artemis.17.0.1/org/gmod/schema/general/Db.java java/artemis.17.0.1/org/gmod/schema/general/DbXRef.class java/artemis.17.0.1/org/gmod/schema/general/DbXRef.java java/artemis.17.0.1/org/gmod/schema/general/Project.java java/artemis.17.0.1/org/gmod/schema/general/Tableinfo.java java/artemis.17.0.1/org/gmod/schema/organism/ java/artemis.17.0.1/org/gmod/schema/organism/Organism.class java/artemis.17.0.1/org/gmod/schema/organism/Organism.java java/artemis.17.0.1/org/gmod/schema/organism/OrganismDbXRef.class java/artemis.17.0.1/org/gmod/schema/organism/OrganismDbXRef.java java/artemis.17.0.1/org/gmod/schema/organism/OrganismProp.class java/artemis.17.0.1/org/gmod/schema/organism/OrganismProp.java java/artemis.17.0.1/org/gmod/schema/phylogeny/ java/artemis.17.0.1/org/gmod/schema/phylogeny/PhylonodeRelationship.class java/artemis.17.0.1/org/gmod/schema/phylogeny/Phylonode.class java/artemis.17.0.1/org/gmod/schema/phylogeny/Phylonode.java java/artemis.17.0.1/org/gmod/schema/phylogeny/PhylonodeDbXRef.class java/artemis.17.0.1/org/gmod/schema/phylogeny/PhylonodeDbXRef.java java/artemis.17.0.1/org/gmod/schema/phylogeny/PhylonodeOrganism.class java/artemis.17.0.1/org/gmod/schema/phylogeny/PhylonodeOrganism.java java/artemis.17.0.1/org/gmod/schema/phylogeny/PhylonodeProp.class java/artemis.17.0.1/org/gmod/schema/phylogeny/PhylonodeProp.java java/artemis.17.0.1/org/gmod/schema/phylogeny/PhylonodePub.class java/artemis.17.0.1/org/gmod/schema/phylogeny/PhylonodePub.java java/artemis.17.0.1/org/gmod/schema/phylogeny/PhylonodeRelationship.java java/artemis.17.0.1/org/gmod/schema/phylogeny/Phylotree.class java/artemis.17.0.1/org/gmod/schema/phylogeny/Phylotree.java java/artemis.17.0.1/org/gmod/schema/phylogeny/PhylotreePub.class java/artemis.17.0.1/org/gmod/schema/phylogeny/PhylotreePub.java java/artemis.17.0.1/org/gmod/schema/pub/ java/artemis.17.0.1/org/gmod/schema/pub/Pub.class java/artemis.17.0.1/org/gmod/schema/pub/Pub.java java/artemis.17.0.1/org/gmod/schema/pub/PubAuthor.class java/artemis.17.0.1/org/gmod/schema/pub/PubAuthor.java java/artemis.17.0.1/org/gmod/schema/pub/PubDbXRef.class java/artemis.17.0.1/org/gmod/schema/pub/PubDbXRef.java java/artemis.17.0.1/org/gmod/schema/pub/PubProp.class java/artemis.17.0.1/org/gmod/schema/pub/PubProp.java java/artemis.17.0.1/org/gmod/schema/pub/PubRelationship.class java/artemis.17.0.1/org/gmod/schema/pub/PubRelationship.java java/artemis.17.0.1/org/gmod/schema/sequence/ java/artemis.17.0.1/org/gmod/schema/sequence/FeatureCvTermDbXRef.class java/artemis.17.0.1/org/gmod/schema/sequence/Feature.class java/artemis.17.0.1/org/gmod/schema/sequence/Feature.java java/artemis.17.0.1/org/gmod/schema/sequence/FeatureCvTerm.class java/artemis.17.0.1/org/gmod/schema/sequence/FeatureCvTerm.java java/artemis.17.0.1/org/gmod/schema/sequence/FeatureRelationship.class java/artemis.17.0.1/org/gmod/schema/sequence/FeatureCvTermDbXRef.java java/artemis.17.0.1/org/gmod/schema/sequence/FeatureCvTermProp.class java/artemis.17.0.1/org/gmod/schema/sequence/FeatureCvTermProp.java java/artemis.17.0.1/org/gmod/schema/sequence/FeatureCvTermPub.class java/artemis.17.0.1/org/gmod/schema/sequence/FeatureCvTermPub.java java/artemis.17.0.1/org/gmod/schema/sequence/FeatureDbXRef.class java/artemis.17.0.1/org/gmod/schema/sequence/FeatureDbXRef.java java/artemis.17.0.1/org/gmod/schema/sequence/FeatureLoc.class java/artemis.17.0.1/org/gmod/schema/sequence/FeatureLoc.java java/artemis.17.0.1/org/gmod/schema/sequence/FeatureLocPub.class java/artemis.17.0.1/org/gmod/schema/sequence/FeatureLocPub.java java/artemis.17.0.1/org/gmod/schema/sequence/FeatureProp.class java/artemis.17.0.1/org/gmod/schema/sequence/FeatureProp.java java/artemis.17.0.1/org/gmod/schema/sequence/FeaturePropPub.class java/artemis.17.0.1/org/gmod/schema/sequence/FeaturePropPub.java java/artemis.17.0.1/org/gmod/schema/sequence/FeaturePub.class java/artemis.17.0.1/org/gmod/schema/sequence/FeaturePub.java java/artemis.17.0.1/org/gmod/schema/sequence/FeatureRelationshipProp.class java/artemis.17.0.1/org/gmod/schema/sequence/FeatureRelationship.java java/artemis.17.0.1/org/gmod/schema/sequence/FeatureRelationshipProp.java java/artemis.17.0.1/org/gmod/schema/sequence/FeatureRelationshipPropPub.class java/artemis.17.0.1/org/gmod/schema/sequence/FeatureRelationshipPropPub.java java/artemis.17.0.1/org/gmod/schema/sequence/FeatureRelationshipPub.class java/artemis.17.0.1/org/gmod/schema/sequence/FeatureRelationshipPub.java java/artemis.17.0.1/org/gmod/schema/sequence/FeatureSynonym.class java/artemis.17.0.1/org/gmod/schema/sequence/FeatureSynonym.java java/artemis.17.0.1/org/gmod/schema/sequence/Synonym.class java/artemis.17.0.1/org/gmod/schema/sequence/Synonym.java java/artemis.17.0.1/org/gmod/schema/utils/ java/artemis.17.0.1/org/gmod/schema/utils/propinterface/ java/artemis.17.0.1/org/gmod/schema/utils/propinterface/PropertyI.class java/artemis.17.0.1/org/gmod/schema/utils/propinterface/PropertyI.java java/artemis.17.0.1/org/gmod/schema/utils/CollectionUtils.class java/artemis.17.0.1/org/gmod/schema/utils/CollectionUtils.java java/artemis.17.0.1/org/gmod/schema/utils/CountedName.class java/artemis.17.0.1/org/gmod/schema/utils/CountedName.java java/artemis.17.0.1/org/gmod/schema/utils/PeptideProperties.java java/artemis.17.0.1/org/gmod/schema/utils/Rankable.class java/artemis.17.0.1/org/gmod/schema/utils/Rankable.java java/artemis.17.0.1/uk/ java/artemis.17.0.1/uk/ac/ java/artemis.17.0.1/uk/ac/sanger/ java/artemis.17.0.1/uk/ac/sanger/artemis/ java/artemis.17.0.1/uk/ac/sanger/artemis/chado/ java/artemis.17.0.1/uk/ac/sanger/artemis/chado/ChadoCvTermView$1$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/chado/ArtemisUtils.class java/artemis.17.0.1/uk/ac/sanger/artemis/chado/ArtemisUtils.java java/artemis.17.0.1/uk/ac/sanger/artemis/chado/ChadoCvTermView$CvRenderer.class java/artemis.17.0.1/uk/ac/sanger/artemis/chado/ChadoCvTermView$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/chado/ChadoCvTermView$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/chado/ChadoCvTermView$LabelTableRender.class java/artemis.17.0.1/uk/ac/sanger/artemis/chado/ChadoCvTermView$TextCellRenderer.class java/artemis.17.0.1/uk/ac/sanger/artemis/chado/ChadoCvTermView.class java/artemis.17.0.1/uk/ac/sanger/artemis/chado/ChadoCvTermView.java java/artemis.17.0.1/uk/ac/sanger/artemis/chado/ChadoDAO.class java/artemis.17.0.1/uk/ac/sanger/artemis/chado/ChadoDAO.java java/artemis.17.0.1/uk/ac/sanger/artemis/chado/ChadoDemo$1$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/chado/ChadoDemo$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/chado/ChadoDemo$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/chado/ChadoDemo$SelectionListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/chado/ChadoDemo.class java/artemis.17.0.1/uk/ac/sanger/artemis/chado/ChadoDemo.java java/artemis.17.0.1/uk/ac/sanger/artemis/chado/ChadoTransaction.class java/artemis.17.0.1/uk/ac/sanger/artemis/chado/ChadoTransaction.java java/artemis.17.0.1/uk/ac/sanger/artemis/chado/ChadoTransactionManager$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/chado/ChadoTransactionManager.class java/artemis.17.0.1/uk/ac/sanger/artemis/chado/ChadoTransactionManager.java java/artemis.17.0.1/uk/ac/sanger/artemis/chado/ClusterLazyQualifierValue.class java/artemis.17.0.1/uk/ac/sanger/artemis/chado/ClusterLazyQualifierValue.java java/artemis.17.0.1/uk/ac/sanger/artemis/chado/CommitFrame$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/chado/CommitFrame$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/chado/CommitFrame.class java/artemis.17.0.1/uk/ac/sanger/artemis/chado/CommitFrame.java java/artemis.17.0.1/uk/ac/sanger/artemis/chado/DbSqlConfig.class java/artemis.17.0.1/uk/ac/sanger/artemis/chado/DbSqlConfig.java java/artemis.17.0.1/uk/ac/sanger/artemis/chado/FeatureForUpdatingResidues.class java/artemis.17.0.1/uk/ac/sanger/artemis/chado/FeatureForUpdatingResidues.java java/artemis.17.0.1/uk/ac/sanger/artemis/chado/FeatureLocLazyQualifierValue.class java/artemis.17.0.1/uk/ac/sanger/artemis/chado/FeatureLocLazyQualifierValue$FeaturePropComparator.class java/artemis.17.0.1/uk/ac/sanger/artemis/chado/FeatureLocLazyQualifierValue.java java/artemis.17.0.1/uk/ac/sanger/artemis/chado/GmodDAO.class java/artemis.17.0.1/uk/ac/sanger/artemis/chado/GmodDAO.java java/artemis.17.0.1/uk/ac/sanger/artemis/chado/Graph.class java/artemis.17.0.1/uk/ac/sanger/artemis/chado/Graph.java java/artemis.17.0.1/uk/ac/sanger/artemis/chado/IBatisDAO.class java/artemis.17.0.1/uk/ac/sanger/artemis/chado/IBatisDAO.java java/artemis.17.0.1/uk/ac/sanger/artemis/chado/JdbcDAO.class java/artemis.17.0.1/uk/ac/sanger/artemis/chado/JdbcDAO.java java/artemis.17.0.1/uk/ac/sanger/artemis/chado/SqlMapClientWrapper.class java/artemis.17.0.1/uk/ac/sanger/artemis/chado/SqlMapClientWrapper.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/ java/artemis.17.0.1/uk/ac/sanger/artemis/circular/digest/ java/artemis.17.0.1/uk/ac/sanger/artemis/circular/digest/CircularGenomeController$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/digest/CircularGenomeController$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/digest/CircularGenomeController$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/digest/CircularGenomeController$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/digest/CircularGenomeController$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/digest/CircularGenomeController$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/digest/CircularGenomeController$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/digest/CircularGenomeController$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/digest/CircularGenomeController.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/digest/CircularGenomeController.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/digest/CutSite.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/digest/CutSite.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/digest/EmbossDigestParser.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/digest/EmbossDigestParser.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/digest/EmbossTableParser.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/digest/EmbossTableParser.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/digest/FileSelectionPanel$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/digest/FileSelectionPanel$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/digest/FileSelectionPanel$SelectionRow.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/digest/FileSelectionPanel.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/digest/FileSelectionPanel.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/digest/FragmentBand.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/digest/FragmentBand.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/digest/InSilicoGelPanel$PopupListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/digest/InSilicoGelPanel.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/digest/InSilicoGelPanel.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/digest/ReportDetails.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/digest/Utils.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/digest/Utils.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/GeneticMarker$ColorEditor.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Block$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Block$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Block$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Block$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Block$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Block$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Block$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Block$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Block$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Block$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Block.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Block.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/BlockComparator.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/BlockComparator.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/DNADraw$1$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/DNADraw$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/DNADraw$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/DNADraw$11.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/DNADraw$12.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/DNADraw$13.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/DNADraw$14.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/DNADraw$15.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/DNADraw$16.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/DNADraw$17.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/DNADraw$18.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/DNADraw$19.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/DNADraw$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/DNADraw$20.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/DNADraw$21.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/DNADraw$22.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/DNADraw$23.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/DNADraw$24.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/DNADraw$25.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/DNADraw$26.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/DNADraw$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/DNADraw$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/DNADraw$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/DNADraw$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/DNADraw$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/DNADraw$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/DNADraw$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/DNADraw.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/DNADraw.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/EmbossCirdnaReader.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/EmbossCirdnaReader.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Feature.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Feature.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/GCGraph.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/GCGraph.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/GCSkewGraph.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/GCSkewGraph.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/GeneticMarker$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/GeneticMarker$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/GeneticMarker$11.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/GeneticMarker$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/GeneticMarker$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/GeneticMarker$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/GeneticMarker$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/GeneticMarker$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/GeneticMarker$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/GeneticMarker$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/GeneticMarker$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/TextFieldFloat$DecimalNumberDocument.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/GeneticMarker$ColorEditor$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/GeneticMarker$ColorRenderer.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/GeneticMarker$MarkerTableModel.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/GeneticMarker.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/GeneticMarker.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Graph$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Graph$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Graph$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Graph$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Graph$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Graph$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Graph$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Graph.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Graph.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/LineAttribute$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/LineAttribute$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/LineAttribute$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/LineAttribute$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/LineAttribute$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/LineAttribute$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/LineAttribute$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/LineAttribute.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/LineAttribute.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/MemoryComboBox.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/MemoryComboBox.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/PrintDNAImage$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/PrintDNAImage$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/PrintDNAImage$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/PrintDNAImage$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/PrintDNAImage.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/PrintDNAImage.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/ProgressFrame.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/ProgressFrame.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/RestrictionEnzyme$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/RestrictionEnzyme$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/RestrictionEnzyme$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/RestrictionEnzyme$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/RestrictionEnzyme$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/RestrictionEnzyme$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/RestrictionEnzyme$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/RestrictionEnzyme$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/RestrictionEnzyme$ColorEditor$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/RestrictionEnzyme$ColorEditor.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/RestrictionEnzyme$ColorRenderer.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/RestrictionEnzyme$RETableModel.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/RestrictionEnzyme.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/RestrictionEnzyme.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/ScrollPanel.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/ScrollPanel.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/SequenceData.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/SequenceData.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/TextFieldFloat.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/TextFieldFloat.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/TextFieldInt.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/TextFieldInt$WholeNumberDocument.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/TextFieldInt.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/TextFieldSink.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/TextFieldSink.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Ticks$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Ticks$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Ticks.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Ticks.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Track.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Track.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/TrackManager$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/TrackManager$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/TrackManager$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/TrackManager$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/TrackManager$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/TrackManager$6$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/TrackManager$6$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/TrackManager$6$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/TrackManager$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/TrackManager$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/TrackManager$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/TrackManager$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/TrackManager.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/TrackManager.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/UserGraph.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/UserGraph.java java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Wizard$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Wizard$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Wizard.class java/artemis.17.0.1/uk/ac/sanger/artemis/circular/Wizard.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/ java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/ java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/MappedReads$CalculateNewFeatures$MarkerObj.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/AbstractGraphPanel$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/AbstractGraphPanel$2$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/AbstractGraphPanel$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/AbstractGraphPanel$PopupListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/AbstractGraphPanel.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/AbstractGraphPanel.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamFrame.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamFrame.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamOSXAdapter$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamOSXAdapter.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamOSXAdapter.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamUtils.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamUtils.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$11.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$12.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$13.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$14.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$15.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$16.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$17.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$18.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$19.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$20.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$21.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$22.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$23.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$24.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$25.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$26.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$27.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$28.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$29.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$30.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$31.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$32.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$33.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$34.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$35.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$36.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$37.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$38.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$39.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$40.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$41.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$42.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$43.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$44.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$45.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$46.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$47.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$48.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$BamReadTask.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$CreateFeatures.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$PairedRead.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$PopupListener$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$PopupListener$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$PopupListener$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$PopupListener$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$PopupListener$5$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$PopupListener$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$PopupListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView$Ruler.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamView.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamViewRecord.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/BamViewRecord.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/CRAMReferenceSequenceFile.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/CRAMReferenceSequenceFile.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/CoveragePanel$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/CoveragePanel$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/CoveragePanel$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/CoveragePanel$HeatMapLn.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/CoveragePanel.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/CoveragePanel.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/FileSelectionDialog$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/FileSelectionDialog$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/FileSelectionDialog$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/FileSelectionDialog$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/FileSelectionDialog.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/FileSelectionDialog.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/GroupBamFrame$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/GroupBamFrame$2$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/GroupBamFrame$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/GroupBamFrame$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/GroupBamFrame$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/GroupBamFrame$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/GroupBamFrame.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/GroupBamFrame.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/LineAttributes$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/LineAttributes$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/LineAttributes$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/LineAttributes$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/LineAttributes.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/LineAttributes.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/LineStyleListRenderer.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/LookSeqPanel$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/LookSeqPanel$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/LookSeqPanel$11.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/LookSeqPanel$12.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/LookSeqPanel$13.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/LookSeqPanel$14.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/LookSeqPanel$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/LookSeqPanel$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/LookSeqPanel$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/LookSeqPanel$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/LookSeqPanel$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/LookSeqPanel$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/LookSeqPanel$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/LookSeqPanel$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/LookSeqPanel.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/LookSeqPanel.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/MappedReads$CalculateMappedReads$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/MappedReads$CalculateMappedReads.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/MappedReads$CalculateTotalMappedReads.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/MappedReads$CalculateNewFeatures.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/PairedReadComparator.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/MappedReads.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/MappedReads.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/PairedReadComparator.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/PopupMessageFrame$PopupThread.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/PopupMessageFrame.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/PopupMessageFrame.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/PrintBamView$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/PrintBamView.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/PrintBamView.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/ReadCount.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/ReadCount.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/ReadCountDialog$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/ReadCountDialog$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/ReadCountDialog$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/ReadCountDialog.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/ReadCountDialog.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/ReadGroupsFrame$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/ReadGroupsFrame$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/ReadGroupsFrame$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/ReadGroupsFrame$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/ReadGroupsFrame.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/ReadGroupsFrame.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/RunSamTools$StderrHandler.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/RunSamTools$StdoutHandler.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/RunSamTools.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/RunSamTools.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/SAMRecordComparator.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/SAMRecordComparator.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/SAMRecordFilter$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/SAMRecordFilter$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/SAMRecordFilter$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/SAMRecordFilter$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/SAMRecordFilter.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/SAMRecordFilter.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/SAMRecordFlagConjunctionPredicate.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/SAMRecordFlagConjunctionPredicate.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/SAMRecordFlagPredicate.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/SAMRecordFlagPredicate.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/SAMRecordList$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/SAMRecordList$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/SAMRecordList$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/SAMRecordList$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/SAMRecordList$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/SAMRecordList$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/SAMRecordList.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/SAMRecordList.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/SAMRecordMapQPredicate.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/SAMRecordMapQPredicate.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/SAMRecordPositionComparator.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/SAMRecordPositionComparator.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/SAMRecordPredicate.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/SAMRecordPredicate.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/SAMRecordSequenceString.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/SAMRecordSequenceString.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/SnpPanel$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/SnpPanel.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/alignment/SnpPanel.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/database/ java/artemis.17.0.1/uk/ac/sanger/artemis/components/database/DatabaseEntrySource.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/database/DatabaseEntrySource.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/database/DatabaseJPanel$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/database/DatabaseJPanel$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/database/DatabaseJPanel$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/database/DatabaseJPanel$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/database/DatabaseJPanel$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/database/DatabaseJPanel$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/database/DatabaseJPanel.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/database/DatabaseJPanel.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/database/DatabaseJTree$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/database/DatabaseJTree.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/database/DatabaseJTree.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/database/DatabaseLoginPrompt$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/database/DatabaseLoginPrompt.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/database/DatabaseLoginPromptConsole.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/database/DatabaseTreeNode.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/database/DatabaseTreeNode.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/database/ILoginPrompt.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/ java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/DatabaseEntryFilterPanel$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/AbstractCellEditor.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/AbstractCellEditor.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/SshJTreeTable$TreeTableCellRenderer.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/DatabaseEntryFilterPanel$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/DatabaseEntryFilterPanel.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/DatabaseEntryFilterPanel.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/FileList.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/FileList.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/FileManager$1$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/FileManager$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/FileManager$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/FileManager$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/FileManager$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/FileManager$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/FileManager.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/FileManager.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/FileNode.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/FileNode.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/FileSystemModel$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/FileSystemModel.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/FileSystemModel.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/JTreeTable$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/JTreeTable$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/JTreeTable$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/JTreeTable$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/JTreeTable$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/JTreeTable$6$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/JTreeTable$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/JTreeTable$PopupListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/JTreeTable$TreeTableCellEditor.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/JTreeTable$TreeTableCellRenderer.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/JTreeTable.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/JTreeTable.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/LocalAndRemoteFileManager$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/LocalAndRemoteFileManager$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/LocalAndRemoteFileManager$11.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/LocalAndRemoteFileManager$12$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/LocalAndRemoteFileManager$12.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/LocalAndRemoteFileManager$13.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/LocalAndRemoteFileManager$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/LocalAndRemoteFileManager$3$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/LocalAndRemoteFileManager$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/LocalAndRemoteFileManager$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/LocalAndRemoteFileManager$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/LocalAndRemoteFileManager$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/LocalAndRemoteFileManager$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/LocalAndRemoteFileManager$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/LocalAndRemoteFileManager$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/LocalAndRemoteFileManager.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/LocalAndRemoteFileManager$DbConnectionThread.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/LocalAndRemoteFileManager.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/RemoteFileNode.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/RemoteFileNode.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/SshJTreeTable$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/SshJTreeTable$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/SshJTreeTable$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/SshJTreeTable$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/SshJTreeTable$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/SshJTreeTable$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/SshJTreeTable$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/SshJTreeTable$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/SshJTreeTable$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/SshJTreeTable$PopupListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/SshJTreeTable$TreeTableCellEditor.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/TransferableFileNodeList.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/SshJTreeTable.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/SshJTreeTable.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/TransferableFileNodeList.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/TreeTableModel.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/TreeTableModel.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/TreeTableModelAdapter$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/TreeTableModelAdapter.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/filetree/TreeTableModelAdapter.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/ java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/ControlledCurationBox.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/AbstractCvBox.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/AbstractCvBox.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/CVPanel$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/CVPanel$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/CVPanel$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/CVPanel$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/CVPanel$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/CVPanel.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/CVPanel$StringVectorComparator.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/CVPanel.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/ControlledCurationBox.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/CvTermSelector$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/CvTermSelector$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/CvTermSelector.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/CvTermSelector.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/CvTermsComparator.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/CvTermsComparator.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/DatePanel$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/DatePanel.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/DatePanel.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/GoBox$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/GoBox$2$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/GoBox$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/GoBox$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/GoBox.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/GoBox.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/HistoryBox.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/HistoryBox.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/ProductBox.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/ProductBox.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/WrapTextArea.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/cv/WrapTextArea.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/gff/ java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/gff/BasicPropertiesPanel.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/gff/AddButton.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/gff/AddButton.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/gff/BasicPropertiesPanel.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/gff/PropertiesPanel$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/gff/PropertiesPanel$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/gff/PropertiesPanel$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/gff/PropertiesPanel$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/gff/PropertiesPanel$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/gff/PropertiesPanel.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/gff/PropertiesPanel.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/gff/RemoveButton.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/gff/RemoveButton.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/ java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/AbstractMatchTable$StringTransferHandler.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/AbstractMatchTable$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/AbstractMatchTable$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/AbstractMatchTable$ButtonEditor$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/AbstractMatchTable$ButtonEditor.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/AbstractMatchTable$CellEditing.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/AbstractMatchTable$LinkEditor$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/AbstractMatchTable$LinkEditor.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/AbstractMatchTable$TableTransferHandler.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/AbstractMatchTable.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/AbstractMatchTable.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/MatchPanel$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/MatchPanel$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/MatchPanel$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/MatchPanel.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/MatchPanel.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/OrthoParalogTable$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/OrthoParalogTable$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/OrthoParalogTable$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/OrthoParalogTable$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/OrthoParalogTable$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/OrthoParalogTable$FeatureNamePredicate.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/OrthoParalogTable$OrthoParalogValueComparator.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/OrthoParalogTable$OrthologRenderer.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/OrthoParalogTable.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/OrthoParalogTable.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/SimilarityTable$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/SimilarityTable$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/SimilarityTable$SimilarityRenderer.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/SimilarityTable.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ortholog/SimilarityTable.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/JExtendedComboBox$ComboPopupMenuLister.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/AutoCompleteComboDocument$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/AutoCompleteComboDocument$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/AutoCompleteComboDocument$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/AutoCompleteComboDocument.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/AutoCompleteComboDocument.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/BasicGeneBuilderFrame$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/BasicGeneBuilderFrame$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/BasicGeneBuilderFrame$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/BasicGeneBuilderFrame$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/BasicGeneBuilderFrame$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/BasicGeneBuilderFrame.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/BasicGeneBuilderFrame.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/BasicGeneViewerPanel$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/BasicGeneViewerPanel$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/BasicGeneViewerPanel$11.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/BasicGeneViewerPanel$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/BasicGeneViewerPanel$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/BasicGeneViewerPanel$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/BasicGeneViewerPanel$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/BasicGeneViewerPanel$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/BasicGeneViewerPanel$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/BasicGeneViewerPanel$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/BasicGeneViewerPanel$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/BasicGeneViewerPanel$PopupListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/BasicGeneViewerPanel.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/BasicGeneViewerPanel.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/BasicProteinMapPanel.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/BasicProteinMapPanel.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ButtonPanel$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ButtonPanel$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ButtonPanel$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ButtonPanel$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ButtonPanel$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ButtonPanel$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ButtonPanel.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ButtonPanel.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneBuilderFrame$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneBuilderFrame$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneBuilderFrame$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneBuilderFrame.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneBuilderFrame$GeneBuilderSelectionChangeListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneBuilderFrame.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneComponentTree.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneComponentTree$GeneTreeSelectionListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneComponentTree.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneEdit$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneEdit$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneEdit$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneEdit$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneEdit$GeneSplash.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneEdit.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneEdit.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneEditorPanel.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneEditorPanel.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneUtils$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneUtils$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneUtils.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneUtils.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneViewerPanel$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneViewerPanel$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneViewerPanel$11.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneViewerPanel$12.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneViewerPanel$13.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneViewerPanel$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneViewerPanel$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneViewerPanel$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneViewerPanel$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneViewerPanel$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneViewerPanel$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneViewerPanel$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneViewerPanel$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneViewerPanel$PopupListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneViewerPanel.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/GeneViewerPanel.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/JExtendedComboBox$ComboBoxRenderer.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/OpenSectionButton$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/JExtendedComboBox.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/JExtendedComboBox.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/MapPanel.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/MapPanel.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/TextAreaDocumentListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/OpenSectionButton.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/OpenSectionButton.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ProteinMapPanel$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ProteinMapPanel$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ProteinMapPanel.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ProteinMapPanel.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ReferencesPanel.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/ReferencesPanel.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/genebuilder/TextAreaDocumentListener.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/ java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/FeatureContigPredicate.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/AbstractVCFReader.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/AbstractVCFReader.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/BCFIndex.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/BCFReader.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/BCFReader$BCFReaderIterator.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/BCFReader.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/CDSFeature.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/CDSFeature.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/FeatureContigPredicate.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/FilteredPanel$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/FilteredPanel.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/FilteredPanel.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/GraphPanel$1$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/GraphPanel$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/GraphPanel$PopupListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/GraphPanel.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/GraphPanel.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/HeaderLine.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/HeaderLine.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/IOUtils.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/IOUtils.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/MultipleAlleleVariant.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/MultipleAlleleVariant.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/PrintVCFview$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/PrintVCFview$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/PrintVCFview$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/PrintVCFview.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/PrintVCFview.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/RecordFilter.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/RecordFilter.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/TabixReader$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/TabixReader$Iterator.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/TabixReader$TIndex.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/TabixReader$TIntv.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/TabixReader$TPair64.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/TabixReader.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/TabixReader.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/TableViewer$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/TableViewer$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/TableViewer$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/TableViewer.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/TableViewer.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFFilter$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFFilter$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFFilter$11.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFFilter$12.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFFilter$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFFilter$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFFilter$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFFilter$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFFilter$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFFilter$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFFilter$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFFilter$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFFilter$FilterListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFFilter.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFFilter.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFRecord.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFRecord.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$11.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$12.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$13.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$14.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$15.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$16.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$17.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$18.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$19.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$20.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$21.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$22.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$23.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$24.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$25.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$26.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$27.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$28.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$29.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$30.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$ManualAnnotation$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$ManualAnnotation.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$PopupListener$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$PopupListener$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview$PopupListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VCFview.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VariantBase.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/variant/VariantBase.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignMatchViewer$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ActMain$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ActMain$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ActMain$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ActMain$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ActMain.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ActMain.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/ActPanelResizer$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ActPanelResizer$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ActPanelResizer$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ActPanelResizer.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ActPanelResizer.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/AddMenu$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AddMenu$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AddMenu$11.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AddMenu$12.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AddMenu$13.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AddMenu$14.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AddMenu$15.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AddMenu$16.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AddMenu$17.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AddMenu$18.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AddMenu$19.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AddMenu$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AddMenu$20.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AddMenu$21.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AddMenu$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AddMenu$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AddMenu$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AddMenu$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AddMenu$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AddMenu$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AddMenu$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AddMenu.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AddMenu.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignMatchViewer$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignmentViewer$AlignMatchComparator.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignMatchViewer$11.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignMatchViewer$12.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignMatchViewer$13.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignMatchViewer$14.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignMatchViewer$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignMatchViewer$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignMatchViewer$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignMatchViewer$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignMatchViewer$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignMatchViewer$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignMatchViewer$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignMatchViewer$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignMatchViewer.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignMatchViewer.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignmentEvent.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignmentEvent.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignmentListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignmentListener.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignmentViewer$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignmentViewer$10$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignmentViewer$10$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignmentViewer$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignmentViewer$11$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignmentViewer$11$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignmentViewer$11.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignmentViewer$12.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignmentViewer$13.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignmentViewer$14.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignmentViewer$15.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignmentViewer$16.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignmentViewer$17.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignmentViewer$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignmentViewer$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignmentViewer$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignmentViewer$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignmentViewer$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignmentViewer$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignmentViewer$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignmentViewer$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ProjectProperty$LaunchActionListener$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignmentViewer$ColorChooserShades.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignmentViewer.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/AlignmentViewer.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/ArtemisMain$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ArtemisMain$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ArtemisMain$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ArtemisMain$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ArtemisMain$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ArtemisMain$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ArtemisMain$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ArtemisMain$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ArtemisMain$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ArtemisMain$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ArtemisMain.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ArtemisMain.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/BasePlot$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/BasePlot.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/BasePlot.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/BasePlotGroup.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/BasePlotGroup.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/BioJavaEntrySource.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/BioJavaEntrySource.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/CanvasPanel.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/CanvasPanel.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/ChoiceFrame$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ChoiceFrame$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ChoiceFrame.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ChoiceFrame.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/ComboBoxRenderer.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ComparatorDialog$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ComparatorDialog$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ComparatorDialog$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ComparatorDialog$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ComparatorDialog$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ComparatorDialog.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ComparatorDialog.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/ComparatorGlue$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ComparatorGlue$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ComparatorGlue$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ComparatorGlue$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ComparatorGlue$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ComparatorGlue.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ComparatorGlue.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/ContigTool$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ContigTool$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ContigTool$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ContigTool$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ContigTool$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ContigTool$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ContigTool$PopupListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ContigTool.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ContigTool.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/DbfetchEntrySource.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/DbfetchEntrySource.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/DisplayAdjustmentEvent.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/DisplayAdjustmentEvent.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/DisplayAdjustmentListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/DisplayAdjustmentListener.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/DisplayComponent.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/DisplayComponent.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$11.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$12.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$13.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$14.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$15.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$16.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$17.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$18.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$19.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$20.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$21.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$22.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$23.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$24.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$25.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$26.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$27.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$28.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$29.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$3$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$30.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$31.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$32.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$33.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$34.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$35.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$36.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$37.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$38.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$39.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$40.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$41.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EditMenu.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryActionListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryActionListener.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$1$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$11.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$12.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$13.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$14.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$15.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$16.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$17.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$18.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$19.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$20.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$21.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$22.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$23.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$24.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$25.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$26.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$27$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$27$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$27$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$27$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$27.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$28.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$29.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$30.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$31.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$CommitButton$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$CommitButton$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit$CommitButton.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEdit.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEditVector.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryEditVector.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryFileDialog$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryFileDialog$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryFileDialog$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryFileDialog.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryFileDialog.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryGroupDisplay$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryGroupDisplay$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryGroupDisplay$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryGroupDisplay.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryGroupDisplay.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryGroupInfoDisplay$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryGroupInfoDisplay$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryGroupInfoDisplay$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryGroupInfoDisplay.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryGroupInfoDisplay.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryGroupMenu$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryGroupMenu$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryGroupMenu$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryGroupMenu$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryGroupMenu$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryGroupMenu$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryGroupMenu$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryGroupMenu.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryGroupMenu.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryGroupPanel$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryGroupPanel.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryGroupPanel.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryHeaderEdit$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryHeaderEdit.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/EntryHeaderEdit.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/ExternalProgramOptions$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ExternalProgramOptions.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ExternalProgramOptions.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureAminoAcidViewer$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureAminoAcidViewer.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureAminoAcidViewer.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureBaseViewer$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureBaseViewer.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureBaseViewer.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureDatabasePredicate.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureDisplay$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureDisplay$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureDisplay$11.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureDisplay$12.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureDisplay$13.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureDisplay$14.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureDisplay$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureDisplay$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureDisplay$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureDisplay$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureDisplay$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureDisplay$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureDisplay$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureDisplay$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureDisplay.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureDisplay.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureEdit$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureEdit$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureEdit$11$1$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureEdit$11$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureEdit$11.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureEdit$12.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureEdit$13.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureEdit$14.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureEdit$15.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureEdit$16.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureEdit$17.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureEdit$18.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureEdit$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureEdit$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureEdit$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureEdit$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureEdit$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureEdit$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureEdit$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureEdit$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureEdit.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureEdit.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureInfo$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureInfo$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureInfo.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureInfo.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureList$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureList$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureList.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureList.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureListFrame$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureListFrame$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureListFrame$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureListFrame.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureListFrame.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePlot.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePlot.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePlotGroup$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePlotGroup$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePlotGroup$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePlotGroup$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePlotGroup.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePlotGroup.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$11.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$12.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$13.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$14.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$15.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$16$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$16$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$16.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$17.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$18.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$19.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$20.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$21.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$22$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$22$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$22.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$23.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$24.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$25.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$26.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$27.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$28.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$29.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$30.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeaturePopup.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureViewer$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureViewer.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FeatureViewer.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/FileDialogEntrySource.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FileDialogEntrySource.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/FileViewer$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FileViewer$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FileViewer$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FileViewer$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FileViewer$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FileViewer$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FileViewer$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FileViewer.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FileViewer.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/FindAndReplace$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FindAndReplace$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FindAndReplace$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FindAndReplace$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FindAndReplace$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FindAndReplace$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FindAndReplace$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FindAndReplace$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FindAndReplace$8$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FindAndReplace$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FindAndReplace$9$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FindAndReplace$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FindAndReplace.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/FindAndReplace.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/GotoMenu$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/GotoMenu$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/GotoMenu$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/GotoMenu$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/GotoMenu$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/GotoMenu$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/GotoMenu$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/GotoMenu$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/GotoMenu$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/GotoMenu$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/GotoMenu.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/GotoMenu.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/GraphMenu$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/GraphMenu$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/GraphMenu$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/GraphMenu$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/GraphMenu$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/GraphMenu.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/GraphMenu.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/IndexReferenceEvent.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/IndexReferenceEvent.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/IndexReferenceListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/IndexReferenceListener.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/InputStreamProgressDialog$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/InputStreamProgressDialog$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/InputStreamProgressDialog$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/InputStreamProgressDialog.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/InputStreamProgressDialog.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/KeyChoice.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/KeyChoice.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/KeyChooser$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/KeyChooser$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/KeyChooser$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/KeyChooser.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/KeyChooser.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/ListDialog$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ListDialog$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ListDialog.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ListDialog.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/ListSelectionPanel$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ListSelectionPanel$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ListSelectionPanel$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ListSelectionPanel$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ListSelectionPanel.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ListSelectionPanel.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/LogReadListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/LogReadListener.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/LogViewer$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/LogViewer.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/LogViewer.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/MarkerRangeRequester.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/MarkerRangeRequester.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/MarkerRangeRequesterEvent.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/MarkerRangeRequesterEvent.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/MarkerRangeRequesterListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/MarkerRangeRequesterListener.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/MessageDialog$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/MessageDialog$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/MessageDialog$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/MessageDialog.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/MessageDialog.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/MessageFrame$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/MessageFrame$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/MessageFrame.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/MessageFrame.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/MultiComparator$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/MultiComparator$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/MultiComparator$11.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/MultiComparator$12.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/MultiComparator$13.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/MultiComparator$14.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/MultiComparator$15.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/MultiComparator$16.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/MultiComparator$17.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/MultiComparator$18.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/MultiComparator$19.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/MultiComparator$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/MultiComparator$20.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/MultiComparator$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/MultiComparator$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/MultiComparator$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/MultiComparator$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/MultiComparator$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/MultiComparator$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/MultiComparator$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/MultiComparator.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/MultiComparator.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/Navigator$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Navigator$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Navigator$11.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Navigator$12.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Navigator$13.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Navigator$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Navigator$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Navigator$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Navigator$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Navigator$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Navigator$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Navigator$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Navigator$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Navigator.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Navigator.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/NonModalDialog$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/NonModalDialog.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/NonModalDialog.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/OSXAdapter$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/OSXAdapter.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/OSXAdapter.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/Plot$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Plot$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Plot$3$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Plot$3$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Plot$3$11.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Plot$3$12.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Plot$3$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Plot$3$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Plot$3$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Plot$3$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Plot$3$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Plot$3$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Plot$3$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Plot$3$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Plot$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Plot$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Plot.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Plot.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/PlotMouseListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/PlotMouseListener.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/PrintACT$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/PrintACT$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/PrintACT$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/PrintACT$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/PrintACT$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/PrintACT.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/PrintACT.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/PrintArtemis$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/PrintArtemis$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/PrintArtemis$11.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/PrintArtemis$12.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/PrintArtemis$13.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/PrintArtemis$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/PrintArtemis$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/PrintArtemis$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/PrintArtemis$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/PrintArtemis$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/PrintArtemis$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/PrintArtemis$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/PrintArtemis$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/PrintArtemis.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/PrintArtemis.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/ProcessWatcher.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ProcessWatcher.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/ProcessWatcherEvent.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ProcessWatcherEvent.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/ProcessWatcherListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ProcessWatcherListener.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/ProgressBarFrame$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ProgressBarFrame.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ProgressBarFrame.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/ProgressThread.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ProgressThread.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/ProjectProperty$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ProjectProperty$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ProjectProperty$11.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ProjectProperty$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ProjectProperty$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ProjectProperty$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ProjectProperty$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ProjectProperty$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ProjectProperty$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ProjectProperty$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ProjectProperty$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ProjectProperty$LaunchActionListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ProjectProperty$TypeComparator.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ProjectProperty.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ProjectProperty.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/QualifierChoice.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/QualifierChoice.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/QualifierEditor$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/QualifierEditor$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/QualifierEditor$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/QualifierEditor$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/QualifierEditor$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/QualifierEditor.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/QualifierEditor.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/QualifierPanel$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/QualifierPanel$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/QualifierPanel.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/QualifierTextArea$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/QualifierTextArea$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/QualifierTextArea.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/QualifierTextArea.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/ReadFeaturesActionListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/RunBlastAtNCBI.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/RunBlastAtNCBI.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/RunMenu$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/RunMenu$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/RunMenu$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/RunMenu$4$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/RunMenu$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/RunMenu$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/RunMenu.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/RunMenu.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/RunPfamSearchThread.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/RunPfamSearchThread.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/SaveEntryActionListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SaveEntryAsActionListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SaveEntryAsEMBLActionListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SaveEntryAsGFFActionListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SaveEntryAsGenbankActionListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SaveEntryAsSubmissionActionListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ScoreChangeEvent.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ScoreChangeEvent.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/ScoreChangeListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ScoreChangeListener.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/ScoreChanger$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ScoreChanger$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ScoreChanger$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ScoreChanger$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ScoreChanger$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ScoreChanger.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ScoreChanger.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/ScoreScrollbar.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ScoreScrollbar.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/SearchResultViewer$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SearchResultViewer.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SearchResultViewer.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/SegmentBorder.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SegmentBorder.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectMenu$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectMenu$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectMenu$11.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectMenu$12.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectMenu$13.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectMenu$14.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectMenu$15.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectMenu$16.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectMenu$17.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectMenu$18.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectMenu$19.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectMenu$1SelectListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectMenu$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectMenu$20.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectMenu$21.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectMenu$22.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectMenu$23.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectMenu$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectMenu$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectMenu$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectMenu$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectMenu$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectMenu$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectMenu$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectMenu.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectMenu.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectionInfoDisplay$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectionInfoDisplay.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectionInfoDisplay.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectionMenu$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectionMenu$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectionMenu.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectionMenu.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectionSubMenu.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectionViewer$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectionViewer.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SelectionViewer.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/Selector$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Selector$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Selector$11.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Selector$12.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Selector$13.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Selector$14.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Selector$15.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Selector$16.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Selector$17$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Selector$17.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Selector$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Selector$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Selector$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Selector$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Selector$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Selector$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Selector$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Selector$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Selector.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Selector.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/SequenceComboBox$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SequenceComboBox.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SequenceComboBox.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/SequenceViewer$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SequenceViewer$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SequenceViewer$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SequenceViewer$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SequenceViewer$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SequenceViewer.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SequenceViewer.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/ShortCut.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ShortCut.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/Splash$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Splash$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Splash$11.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Splash$12$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Splash$12.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Splash$13.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Splash$14.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Splash$15.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Splash$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Splash$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Splash$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Splash$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Splash$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Splash$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Splash$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Splash$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Splash.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Splash.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/StickyFileChooser.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/StickyFileChooser.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/SwingWorker$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SwingWorker$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SwingWorker$ThreadVar.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SwingWorker.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/SwingWorker.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/TextDialog$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/TextDialog$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/TextDialog$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/TextDialog.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/TextDialog.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/TextFieldSink$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/TextFieldSink.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/TextFieldSink.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/TextRequester$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/TextRequester$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/TextRequester$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/TextRequester.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/TextRequester.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/TextRequesterEvent.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/TextRequesterEvent.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/TextRequesterListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/TextRequesterListener.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/TransferAnnotationTool$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/TransferAnnotationTool$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/TransferAnnotationTool$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/TransferAnnotationTool$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/TransferAnnotationTool$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/TransferAnnotationTool$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/TransferAnnotationTool.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/TransferAnnotationTool.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/TransferFeaturePredicate.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/TransferableContig.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/TransferableContig.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/UserDefinedQualifiers$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/UserDefinedQualifiers$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/UserDefinedQualifiers$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/UserDefinedQualifiers$4$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/UserDefinedQualifiers$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/UserDefinedQualifiers$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/UserDefinedQualifiers$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/UserDefinedQualifiers$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/UserDefinedQualifiers$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/UserDefinedQualifiers$ComboMouseListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/UserDefinedQualifiers$OboFileFilter.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/UserDefinedQualifiers$QualifierList.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/UserDefinedQualifiers.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/UserDefinedQualifiers.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/Utilities.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/Utilities.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/ValidateViewer$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ValidateViewer$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ValidateViewer$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ValidateViewer$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ValidateViewer$5$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ValidateViewer$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ValidateViewer.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ValidateViewer.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$11.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$12.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$13.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$14.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$15.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$16.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$17.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$18.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$19.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$20.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$21.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$22.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$23.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$24.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$25.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$26.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$27.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$28.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$29.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$30.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$31.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$32.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$33.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$34.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$35.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$36.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$37.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$38.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$39.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$40.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$41.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ViewMenu.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/WriteMenu$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/WriteMenu$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/WriteMenu$11.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/WriteMenu$12.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/WriteMenu$13.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/WriteMenu$14.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/WriteMenu$15.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/WriteMenu$16.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/WriteMenu$17.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/WriteMenu$18.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/WriteMenu$19.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/WriteMenu$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/WriteMenu$20.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/WriteMenu$21.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/WriteMenu$22.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/WriteMenu$23.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/WriteMenu$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/WriteMenu$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/WriteMenu$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/WriteMenu$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/WriteMenu$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/WriteMenu$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/WriteMenu$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/WriteMenu.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/WriteMenu.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/YesNoDialog.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/YesNoDialog.java java/artemis.17.0.1/uk/ac/sanger/artemis/components/ZoomScrollBar$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ZoomScrollBar$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ZoomScrollBar.class java/artemis.17.0.1/uk/ac/sanger/artemis/components/ZoomScrollBar.java java/artemis.17.0.1/uk/ac/sanger/artemis/cramtools/ java/artemis.17.0.1/uk/ac/sanger/artemis/cramtools/ref/ java/artemis.17.0.1/uk/ac/sanger/artemis/cramtools/ref/PathPattern.class java/artemis.17.0.1/uk/ac/sanger/artemis/cramtools/ref/PathPattern.java java/artemis.17.0.1/uk/ac/sanger/artemis/cramtools/ref/ReferenceRegion.class java/artemis.17.0.1/uk/ac/sanger/artemis/cramtools/ref/ReferenceRegion.java java/artemis.17.0.1/uk/ac/sanger/artemis/cramtools/ref/ReferenceSource.class java/artemis.17.0.1/uk/ac/sanger/artemis/cramtools/ref/ReferenceSequenceFromSeekable$FastaSequenceIndexEntry.class java/artemis.17.0.1/uk/ac/sanger/artemis/cramtools/ref/ReferenceSequenceFromSeekable.class java/artemis.17.0.1/uk/ac/sanger/artemis/cramtools/ref/ReferenceSequenceFromSeekable.java java/artemis.17.0.1/uk/ac/sanger/artemis/cramtools/ref/ReferenceSource.java java/artemis.17.0.1/uk/ac/sanger/artemis/cramtools/ref/Utils.class java/artemis.17.0.1/uk/ac/sanger/artemis/cramtools/ref/Utils.java java/artemis.17.0.1/uk/ac/sanger/artemis/editor/ java/artemis.17.0.1/uk/ac/sanger/artemis/editor/Annotation$PopupListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/Annotation$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/DBViewer$PopupListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/Annotation.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/Annotation.java java/artemis.17.0.1/uk/ac/sanger/artemis/editor/BigPane$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/BigPane$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/BigPane$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/BigPane$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/BigPane$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/BigPane$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/BigPane$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/BigPane$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/BigPane$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/BigPane$winExit.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/BigPane.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/BigPane.java java/artemis.17.0.1/uk/ac/sanger/artemis/editor/BrowserControl.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/BrowserControl.java java/artemis.17.0.1/uk/ac/sanger/artemis/editor/CommonMenu$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/CommonMenu.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/CommonMenu.java java/artemis.17.0.1/uk/ac/sanger/artemis/editor/DBViewer$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/DBViewer$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/DBViewer$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/DBViewer$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/DBViewer$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/DBViewer$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/DataCollectionPane$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/DBViewer.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/DBViewer.java java/artemis.17.0.1/uk/ac/sanger/artemis/editor/DataViewInternalFrame$ActiveJSplitPane.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/DataCollectionPane$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/DataCollectionPane$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/DataCollectionPane$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/DataCollectionPane$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/DataCollectionPane$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/DataCollectionPane.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/DataCollectionPane.java java/artemis.17.0.1/uk/ac/sanger/artemis/editor/DataViewInternalFrame$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/DataViewInternalFrame$TabChangeListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/DataViewInternalFrame.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/DataViewInternalFrame.java java/artemis.17.0.1/uk/ac/sanger/artemis/editor/EvidenceViewer$MouseClickListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/EvidenceViewer.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/EvidenceViewer.java java/artemis.17.0.1/uk/ac/sanger/artemis/editor/ExternalApplication$StderrHandler.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/ExternalApplication$StdoutHandler.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/ExternalApplication.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/ExternalApplication.java java/artemis.17.0.1/uk/ac/sanger/artemis/editor/FastaListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/FastaListener.java java/artemis.17.0.1/uk/ac/sanger/artemis/editor/FastaTextPane$GetzThread.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/FastaTextPane.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/FastaTextPane.java java/artemis.17.0.1/uk/ac/sanger/artemis/editor/HitInfo.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/HitInfo.java java/artemis.17.0.1/uk/ac/sanger/artemis/editor/MouseOverButton.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/MouseOverButton.java java/artemis.17.0.1/uk/ac/sanger/artemis/editor/MultiLineToolTipUI$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/MultiLineToolTipUI$MyToolTip.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/MultiLineToolTipUI.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/MultiLineToolTipUI.java java/artemis.17.0.1/uk/ac/sanger/artemis/editor/PlafMacros.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/PlafMacros.java java/artemis.17.0.1/uk/ac/sanger/artemis/editor/ScrollPanel.class java/artemis.17.0.1/uk/ac/sanger/artemis/editor/ScrollPanel.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/ java/artemis.17.0.1/uk/ac/sanger/artemis/io/BlastEntryInformation.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/BetweenRange.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/BetweenRange.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/BioJavaEntry.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/BioJavaEntry.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/BioJavaFeature.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/BioJavaFeature.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/BioJavaSequence.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/BioJavaSequence.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/BlastDocumentEntry.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/BlastDocumentEntry.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/IndexedGFFDocumentEntry$ContigCompare.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/BlastEntryInformation.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/BlastStreamFeature.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/BlastStreamFeature.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/ChadoCanonicalGene$RangeComparator.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/ChadoCanonicalGene.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/ChadoCanonicalGene.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/ComparableFeature.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/ComparableFeature.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/DatabaseDocumentEntry.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/DatabaseDocumentEntry.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/DatabaseInferredFeature.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/DatabaseInferredFeature.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/DatabaseStreamFeature.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/DatabaseStreamFeature.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/DateStampFeature.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/DateStampFeature.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/DocumentEntry.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/DocumentEntry.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/DocumentEntryAutosaveThread.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/DocumentEntryAutosaveThread.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/DocumentEntryFactory.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/DocumentEntryFactory.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/DocumentFeature.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/DocumentFeature.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/EMBLObject.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/EMBLObject.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/EmblDocumentEntry.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/EmblDocumentEntry.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/EmblMisc.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/EmblMisc.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/EmblStreamFeature.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/EmblStreamFeature.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/EmblStreamSequence.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/EmblStreamSequence.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/Entry.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/Entry.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/EntryInformation.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/EntryInformation.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/EntryInformationException.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/EntryInformationException.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/EntryStreamEvent.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/EntryStreamEvent.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/FastaStreamSequence.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/FastaStreamSequence.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/Feature.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/Feature.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/FeatureComparator.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/FeatureComparator.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/FeatureEnumeration.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/FeatureEnumeration.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/FeatureHeader.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/FeatureHeader.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/FeatureTable.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/FeatureTable.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/FeatureTree$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/FeatureTree$FeatureEnumerator.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/FeatureTree.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/FeatureTree.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/FeatureVector.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/FeatureVector.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/FuzzyRange.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/FuzzyRange.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/GFF3AttributeAggregator.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/GFF3AttributeAggregator.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/GFF3AttributeBuilder$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/GFF3AttributeBuilder$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/GFF3AttributeBuilder.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/GFF3AttributeBuilder.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/GFF3Encoder.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/GFF3Encoder.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/GFFDocumentEntry.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/GFFDocumentEntry.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/GFFEntryInformation.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/GFFEntryInformation.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/GFFMisc.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/GFFMisc.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/GFFStreamFeature$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/GFFStreamFeature$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/GFFStreamFeature$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/GFFStreamFeature$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/GFFStreamFeature$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/GFFStreamFeature$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/GFFStreamFeature$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/GFFStreamFeature$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/GFFStreamFeature.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/GFFStreamFeature.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/GFFUtils.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/GFFUtils.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/GenbankDocumentEntry.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/GenbankDocumentEntry.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/GenbankMisc.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/GenbankMisc.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/GenbankStreamFeature.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/GenbankStreamFeature.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/GenbankStreamSequence.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/GenbankStreamSequence.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/GenbankTblOutputStream.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/GenbankTblOutputStream.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/GffToEMBL.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/GffToEMBL.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/IndexFastaStream.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/IndexFastaStream.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/IndexedGFFDocumentEntry$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/IndexedGFFDocumentEntry$IndexContig.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/IndexedGFFDocumentEntry$IndexGFFFeatureEnumeration.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/IndexedGFFDocumentEntry.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/IndexedGFFDocumentEntry.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/InvalidKeyException.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/InvalidKeyException.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/InvalidQualifierException.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/InvalidQualifierException.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/InvalidRelationException.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/InvalidRelationException.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/Key.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/Key.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/KeyVector.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/KeyVector.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/LazyQualifierValue.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/LazyQualifierValue.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/LineGroup.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/LineGroup.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/Location.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/Location.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/LocationLexer$TokenEnumeration.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/LocationLexer.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/LocationLexer.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/LocationParseException.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/LocationParseException.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/LocationParseNode.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/LocationParseNode.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/LocationParseNodeVector.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/LocationParseNodeVector.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/LowerInteger.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/LowerInteger.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/MSPcrunchDocumentEntry.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/MSPcrunchDocumentEntry.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/MSPcrunchEntryInformation.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/MSPcrunchEntryInformation.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/MSPcrunchStreamFeature.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/MSPcrunchStreamFeature.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/MiscLineGroup.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/MiscLineGroup.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/OutOfDateException.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/OutOfDateException.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/Packing.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/Packing.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/PartialSequence.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/PartialSequence.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/PublicDBDocumentEntry.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/PublicDBDocumentEntry.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/PublicDBStreamFeature.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/PublicDBStreamFeature.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/Qualifier.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/Qualifier.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/QualifierInfo.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/QualifierInfo.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/QualifierInfoException.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/QualifierInfoException.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/QualifierInfoHash.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/QualifierInfoHash.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/QualifierInfoVector.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/QualifierInfoVector.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/QualifierLazyLoading.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/QualifierLazyLoading.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/QualifierParseException.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/QualifierParseException.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/QualifierVector.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/QualifierVector.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/Range.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/Range.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/RangeVector.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/RangeVector.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/RawStreamSequence.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/RawStreamSequence.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/ReadAndWriteEntry$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/ReadAndWriteEntry.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/ReadAndWriteEntry.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/ReadEvent.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/ReadEvent.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/ReadFormatException.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/ReadFormatException.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/ReadListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/ReadListener.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/ReadOnlyEmblStreamFeature.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/ReadOnlyEmblStreamFeature.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/ReadOnlyEntry.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/ReadOnlyEntry.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/Sequence.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/Sequence.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/SimpleDocumentEntry$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/SimpleDocumentEntry.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/SimpleDocumentEntry.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/SimpleDocumentFeature.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/SimpleDocumentFeature.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/SimpleEntryInformation.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/SimpleEntryInformation.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/StreamFeature.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/StreamFeature.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/StreamFeatureTable.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/StreamFeatureTable.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/StreamQualifier.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/StreamQualifier.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/StreamSequence.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/StreamSequence.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/StreamSequenceFactory.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/StreamSequenceFactory.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/UI$UIMode.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/UI.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/UI.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/UIEraserThread.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/UIEraserThread.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/UpperInteger.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/UpperInteger.java java/artemis.17.0.1/uk/ac/sanger/artemis/io/ValidateFeature$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/ValidateFeature$10.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/ValidateFeature$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/ValidateFeature$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/ValidateFeature$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/ValidateFeature$5.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/ValidateFeature$6.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/ValidateFeature$7.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/ValidateFeature$8.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/ValidateFeature$9.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/ValidateFeature.class java/artemis.17.0.1/uk/ac/sanger/artemis/io/ValidateFeature.java java/artemis.17.0.1/uk/ac/sanger/artemis/j2ssh/ java/artemis.17.0.1/uk/ac/sanger/artemis/j2ssh/FileTransferProgressMonitor.java java/artemis.17.0.1/uk/ac/sanger/artemis/j2ssh/FTProgress.class java/artemis.17.0.1/uk/ac/sanger/artemis/j2ssh/FTProgress.java java/artemis.17.0.1/uk/ac/sanger/artemis/j2ssh/FileTransferProgressMonitor.class java/artemis.17.0.1/uk/ac/sanger/artemis/j2ssh/SshFileManager$SshGet.class java/artemis.17.0.1/uk/ac/sanger/artemis/j2ssh/SshFileManager.class java/artemis.17.0.1/uk/ac/sanger/artemis/j2ssh/SshFileManager.java java/artemis.17.0.1/uk/ac/sanger/artemis/j2ssh/SshLogin.class java/artemis.17.0.1/uk/ac/sanger/artemis/j2ssh/SshLogin.java java/artemis.17.0.1/uk/ac/sanger/artemis/j2ssh/SshPSUClient$StdoutStdErrHandler.class java/artemis.17.0.1/uk/ac/sanger/artemis/j2ssh/SshPSUClient.class java/artemis.17.0.1/uk/ac/sanger/artemis/j2ssh/SshPSUClient.java java/artemis.17.0.1/uk/ac/sanger/artemis/plot/ java/artemis.17.0.1/uk/ac/sanger/artemis/plot/ATDeviationAlgorithm.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/AGWindowAlgorithm.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/AGWindowAlgorithm.java java/artemis.17.0.1/uk/ac/sanger/artemis/plot/ATDeviationAlgorithm.java java/artemis.17.0.1/uk/ac/sanger/artemis/plot/Algorithm.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/Algorithm.java java/artemis.17.0.1/uk/ac/sanger/artemis/plot/BaseAlgorithm.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/BaseAlgorithm.java java/artemis.17.0.1/uk/ac/sanger/artemis/plot/CSCSAlgorithm.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/CSCSAlgorithm.java java/artemis.17.0.1/uk/ac/sanger/artemis/plot/Codon12CorrelationAlgorithm.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/Codon12CorrelationAlgorithm.java java/artemis.17.0.1/uk/ac/sanger/artemis/plot/CodonUsageAlgorithm.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/CodonUsageAlgorithm.java java/artemis.17.0.1/uk/ac/sanger/artemis/plot/CodonUsageFormatException.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/CodonUsageFormatException.java java/artemis.17.0.1/uk/ac/sanger/artemis/plot/CodonUsageWeight.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/CodonUsageWeight.java java/artemis.17.0.1/uk/ac/sanger/artemis/plot/CodonWeight.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/CodonWeight.java java/artemis.17.0.1/uk/ac/sanger/artemis/plot/CoilFeatureAlgorithm.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/CoilFeatureAlgorithm.java java/artemis.17.0.1/uk/ac/sanger/artemis/plot/CumulativeATSkewAlgorithm.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/CumulativeATSkewAlgorithm.java java/artemis.17.0.1/uk/ac/sanger/artemis/plot/CumulativeGCSkewAlgorithm.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/CumulativeGCSkewAlgorithm.java java/artemis.17.0.1/uk/ac/sanger/artemis/plot/EntropyAlgorithm.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/EntropyAlgorithm.java java/artemis.17.0.1/uk/ac/sanger/artemis/plot/FeatureAlgorithm.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/FeatureAlgorithm.java java/artemis.17.0.1/uk/ac/sanger/artemis/plot/GCDeviationAlgorithm.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/GCDeviationAlgorithm.java java/artemis.17.0.1/uk/ac/sanger/artemis/plot/GCFrameAlgorithm.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/GCFrameAlgorithm.java java/artemis.17.0.1/uk/ac/sanger/artemis/plot/GCSDWindowAlgorithm.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/GCSDWindowAlgorithm.java java/artemis.17.0.1/uk/ac/sanger/artemis/plot/GCWindowAlgorithm.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/GCWindowAlgorithm.java java/artemis.17.0.1/uk/ac/sanger/artemis/plot/HydroAlgorithm.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/HydroAlgorithm.java java/artemis.17.0.1/uk/ac/sanger/artemis/plot/HydrophilicityAlgorithm.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/HydrophilicityAlgorithm.java java/artemis.17.0.1/uk/ac/sanger/artemis/plot/HydrophobicityAlgorithm.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/HydrophobicityAlgorithm.java java/artemis.17.0.1/uk/ac/sanger/artemis/plot/ICDIAlgorithm.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/ICDIAlgorithm.java java/artemis.17.0.1/uk/ac/sanger/artemis/plot/KarlinSigAlgorithm.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/KarlinSigAlgorithm.java java/artemis.17.0.1/uk/ac/sanger/artemis/plot/LineAttributes$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/LineAttributes$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/LineAttributes$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/LineAttributes$4.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/LineAttributes.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/LineAttributes.java java/artemis.17.0.1/uk/ac/sanger/artemis/plot/LineStyleListRenderer.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/MRIAlgorithm.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/MRIAlgorithm.java java/artemis.17.0.1/uk/ac/sanger/artemis/plot/NcAlgorithm.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/NcAlgorithm.java java/artemis.17.0.1/uk/ac/sanger/artemis/plot/PositionalAsymmetryAlgorithm.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/PositionalAsymmetryAlgorithm.java java/artemis.17.0.1/uk/ac/sanger/artemis/plot/ScaledChiAlgorithm.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/ScaledChiAlgorithm.java java/artemis.17.0.1/uk/ac/sanger/artemis/plot/UserDataAlgorithm$TabixIdxGraph.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/UserDataAlgorithm$Wiggle.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/UserDataAlgorithm.class java/artemis.17.0.1/uk/ac/sanger/artemis/plot/UserDataAlgorithm.java java/artemis.17.0.1/uk/ac/sanger/artemis/sequence/ java/artemis.17.0.1/uk/ac/sanger/artemis/sequence/BasePatternFormatException.class java/artemis.17.0.1/uk/ac/sanger/artemis/sequence/AminoAcidSequence.class java/artemis.17.0.1/uk/ac/sanger/artemis/sequence/AminoAcidSequence.java java/artemis.17.0.1/uk/ac/sanger/artemis/sequence/BasePattern.class java/artemis.17.0.1/uk/ac/sanger/artemis/sequence/BasePattern.java java/artemis.17.0.1/uk/ac/sanger/artemis/sequence/BasePatternFormatException.java java/artemis.17.0.1/uk/ac/sanger/artemis/sequence/Bases.class java/artemis.17.0.1/uk/ac/sanger/artemis/sequence/Bases.java java/artemis.17.0.1/uk/ac/sanger/artemis/sequence/Marker.class java/artemis.17.0.1/uk/ac/sanger/artemis/sequence/Marker.java java/artemis.17.0.1/uk/ac/sanger/artemis/sequence/MarkerChangeEvent.class java/artemis.17.0.1/uk/ac/sanger/artemis/sequence/MarkerChangeEvent.java java/artemis.17.0.1/uk/ac/sanger/artemis/sequence/MarkerChangeListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/sequence/MarkerChangeListener.java java/artemis.17.0.1/uk/ac/sanger/artemis/sequence/MarkerInternal.class java/artemis.17.0.1/uk/ac/sanger/artemis/sequence/MarkerRange.class java/artemis.17.0.1/uk/ac/sanger/artemis/sequence/MarkerRange.java java/artemis.17.0.1/uk/ac/sanger/artemis/sequence/MarkerRangeVector.class java/artemis.17.0.1/uk/ac/sanger/artemis/sequence/MarkerRangeVector.java java/artemis.17.0.1/uk/ac/sanger/artemis/sequence/NoSequenceException.class java/artemis.17.0.1/uk/ac/sanger/artemis/sequence/NoSequenceException.java java/artemis.17.0.1/uk/ac/sanger/artemis/sequence/SequenceChangeEvent.class java/artemis.17.0.1/uk/ac/sanger/artemis/sequence/SequenceChangeEvent.java java/artemis.17.0.1/uk/ac/sanger/artemis/sequence/SequenceChangeListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/sequence/SequenceChangeListener.java java/artemis.17.0.1/uk/ac/sanger/artemis/sequence/Strand.class java/artemis.17.0.1/uk/ac/sanger/artemis/sequence/Strand.java java/artemis.17.0.1/uk/ac/sanger/artemis/util/ java/artemis.17.0.1/uk/ac/sanger/artemis/util/DatabaseLocationParser.class java/artemis.17.0.1/uk/ac/sanger/artemis/util/ByteBuffer.class java/artemis.17.0.1/uk/ac/sanger/artemis/util/ByteBuffer.java java/artemis.17.0.1/uk/ac/sanger/artemis/util/CacheHashMap.class java/artemis.17.0.1/uk/ac/sanger/artemis/util/CacheHashMap.java java/artemis.17.0.1/uk/ac/sanger/artemis/util/DatabaseDocument$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/util/DatabaseDocument.class java/artemis.17.0.1/uk/ac/sanger/artemis/util/DatabaseDocument$CvTermThread.class java/artemis.17.0.1/uk/ac/sanger/artemis/util/DatabaseDocument$LocationComarator.class java/artemis.17.0.1/uk/ac/sanger/artemis/util/DatabaseDocument.java java/artemis.17.0.1/uk/ac/sanger/artemis/util/DatabaseLocationParser.java java/artemis.17.0.1/uk/ac/sanger/artemis/util/Document.class java/artemis.17.0.1/uk/ac/sanger/artemis/util/Document.java java/artemis.17.0.1/uk/ac/sanger/artemis/util/DocumentBlockCompressed.class java/artemis.17.0.1/uk/ac/sanger/artemis/util/DocumentFactory.class java/artemis.17.0.1/uk/ac/sanger/artemis/util/DocumentFactory.java java/artemis.17.0.1/uk/ac/sanger/artemis/util/FTPSeekableStream.class java/artemis.17.0.1/uk/ac/sanger/artemis/util/FTPSeekableStream.java java/artemis.17.0.1/uk/ac/sanger/artemis/util/FastVector.class java/artemis.17.0.1/uk/ac/sanger/artemis/util/FastVector.java java/artemis.17.0.1/uk/ac/sanger/artemis/util/FileDocument.class java/artemis.17.0.1/uk/ac/sanger/artemis/util/FileDocument.java java/artemis.17.0.1/uk/ac/sanger/artemis/util/InputStreamProgressEvent.class java/artemis.17.0.1/uk/ac/sanger/artemis/util/InputStreamProgressEvent.java java/artemis.17.0.1/uk/ac/sanger/artemis/util/InputStreamProgressListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/util/InputStreamProgressListener.java java/artemis.17.0.1/uk/ac/sanger/artemis/util/InputStreamProgressListenerVector.class java/artemis.17.0.1/uk/ac/sanger/artemis/util/InputStreamProgressListenerVector.java java/artemis.17.0.1/uk/ac/sanger/artemis/util/LargeObjectDocument.class java/artemis.17.0.1/uk/ac/sanger/artemis/util/LargeObjectDocument.java java/artemis.17.0.1/uk/ac/sanger/artemis/util/LinePushBackReader.class java/artemis.17.0.1/uk/ac/sanger/artemis/util/LinePushBackReader.java java/artemis.17.0.1/uk/ac/sanger/artemis/util/OutOfRangeException.class java/artemis.17.0.1/uk/ac/sanger/artemis/util/OutOfRangeException.java java/artemis.17.0.1/uk/ac/sanger/artemis/util/ProgressInputStream.class java/artemis.17.0.1/uk/ac/sanger/artemis/util/ProgressInputStream.java java/artemis.17.0.1/uk/ac/sanger/artemis/util/PushBackException.class java/artemis.17.0.1/uk/ac/sanger/artemis/util/PushBackException.java java/artemis.17.0.1/uk/ac/sanger/artemis/util/ReadOnlyException.class java/artemis.17.0.1/uk/ac/sanger/artemis/util/ReadOnlyException.java java/artemis.17.0.1/uk/ac/sanger/artemis/util/RemoteFileDocument.class java/artemis.17.0.1/uk/ac/sanger/artemis/util/RemoteFileDocument.java java/artemis.17.0.1/uk/ac/sanger/artemis/util/StringVector$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/util/StringVector.class java/artemis.17.0.1/uk/ac/sanger/artemis/util/StringVector.java java/artemis.17.0.1/uk/ac/sanger/artemis/util/TextDocument.class java/artemis.17.0.1/uk/ac/sanger/artemis/util/TextDocument.java java/artemis.17.0.1/uk/ac/sanger/artemis/util/URLDocument.class java/artemis.17.0.1/uk/ac/sanger/artemis/util/URLDocument.java java/artemis.17.0.1/uk/ac/sanger/artemis/util/WorkingGZIPInputStream.class java/artemis.17.0.1/uk/ac/sanger/artemis/util/WorkingGZIPInputStream.java java/artemis.17.0.1/uk/ac/sanger/artemis/util/ZipFileDocument.class java/artemis.17.0.1/uk/ac/sanger/artemis/util/ZipFileDocument.java java/artemis.17.0.1/uk/ac/sanger/artemis/BlastM8ComparisonData.class java/artemis.17.0.1/uk/ac/sanger/artemis/.project java/artemis.17.0.1/uk/ac/sanger/artemis/Action.class java/artemis.17.0.1/uk/ac/sanger/artemis/Action.java java/artemis.17.0.1/uk/ac/sanger/artemis/ActionController.class java/artemis.17.0.1/uk/ac/sanger/artemis/ActionController.java java/artemis.17.0.1/uk/ac/sanger/artemis/ActionVector.class java/artemis.17.0.1/uk/ac/sanger/artemis/ActionVector.java java/artemis.17.0.1/uk/ac/sanger/artemis/AlignMatch.class java/artemis.17.0.1/uk/ac/sanger/artemis/AlignMatch.java java/artemis.17.0.1/uk/ac/sanger/artemis/AlignMatchVector.class java/artemis.17.0.1/uk/ac/sanger/artemis/AlignMatchVector.java java/artemis.17.0.1/uk/ac/sanger/artemis/FilteredEntryGroup$FeatureEnumerator.class java/artemis.17.0.1/uk/ac/sanger/artemis/AlignmentSelectionChangeEvent.class java/artemis.17.0.1/uk/ac/sanger/artemis/AlignmentSelectionChangeEvent.java java/artemis.17.0.1/uk/ac/sanger/artemis/AlignmentSelectionChangeListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/AlignmentSelectionChangeListener.java java/artemis.17.0.1/uk/ac/sanger/artemis/BlastM8ComparisonData.java java/artemis.17.0.1/uk/ac/sanger/artemis/ChangeEvent.class java/artemis.17.0.1/uk/ac/sanger/artemis/ChangeEvent.java java/artemis.17.0.1/uk/ac/sanger/artemis/ChangeEventVector.class java/artemis.17.0.1/uk/ac/sanger/artemis/ChangeEventVector.java java/artemis.17.0.1/uk/ac/sanger/artemis/ChangeListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/ChangeListener.java java/artemis.17.0.1/uk/ac/sanger/artemis/ClipBoard.class java/artemis.17.0.1/uk/ac/sanger/artemis/ClipBoard.java java/artemis.17.0.1/uk/ac/sanger/artemis/ComparisonData.class java/artemis.17.0.1/uk/ac/sanger/artemis/ComparisonData.java java/artemis.17.0.1/uk/ac/sanger/artemis/ComparisonDataFactory.class java/artemis.17.0.1/uk/ac/sanger/artemis/ComparisonDataFactory.java java/artemis.17.0.1/uk/ac/sanger/artemis/ComparisonDataParseException.class java/artemis.17.0.1/uk/ac/sanger/artemis/ComparisonDataParseException.java java/artemis.17.0.1/uk/ac/sanger/artemis/Entry$FeatureEnumerator.class java/artemis.17.0.1/uk/ac/sanger/artemis/Entry.class java/artemis.17.0.1/uk/ac/sanger/artemis/Entry.java java/artemis.17.0.1/uk/ac/sanger/artemis/EntryChangeEvent.class java/artemis.17.0.1/uk/ac/sanger/artemis/EntryChangeEvent.java java/artemis.17.0.1/uk/ac/sanger/artemis/EntryChangeListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/EntryChangeListener.java java/artemis.17.0.1/uk/ac/sanger/artemis/EntryGroup.class java/artemis.17.0.1/uk/ac/sanger/artemis/EntryGroup.java java/artemis.17.0.1/uk/ac/sanger/artemis/EntryGroupChangeEvent.class java/artemis.17.0.1/uk/ac/sanger/artemis/EntryGroupChangeEvent.java java/artemis.17.0.1/uk/ac/sanger/artemis/EntryGroupChangeListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/EntryGroupChangeListener.java java/artemis.17.0.1/uk/ac/sanger/artemis/EntrySource.class java/artemis.17.0.1/uk/ac/sanger/artemis/EntrySource.java java/artemis.17.0.1/uk/ac/sanger/artemis/EntrySourceVector.class java/artemis.17.0.1/uk/ac/sanger/artemis/EntrySourceVector.java java/artemis.17.0.1/uk/ac/sanger/artemis/EntryVector.class java/artemis.17.0.1/uk/ac/sanger/artemis/EntryVector.java java/artemis.17.0.1/uk/ac/sanger/artemis/ExternalProgram.class java/artemis.17.0.1/uk/ac/sanger/artemis/ExternalProgram.java java/artemis.17.0.1/uk/ac/sanger/artemis/ExternalProgramEvent.class java/artemis.17.0.1/uk/ac/sanger/artemis/ExternalProgramEvent.java java/artemis.17.0.1/uk/ac/sanger/artemis/ExternalProgramException.class java/artemis.17.0.1/uk/ac/sanger/artemis/ExternalProgramException.java java/artemis.17.0.1/uk/ac/sanger/artemis/ExternalProgramListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/ExternalProgramListener.java java/artemis.17.0.1/uk/ac/sanger/artemis/ExternalProgramMonitor.class java/artemis.17.0.1/uk/ac/sanger/artemis/ExternalProgramMonitor.java java/artemis.17.0.1/uk/ac/sanger/artemis/ExternalProgramThread.class java/artemis.17.0.1/uk/ac/sanger/artemis/ExternalProgramThread.java java/artemis.17.0.1/uk/ac/sanger/artemis/ExternalProgramVector.class java/artemis.17.0.1/uk/ac/sanger/artemis/ExternalProgramVector.java java/artemis.17.0.1/uk/ac/sanger/artemis/Feature.class java/artemis.17.0.1/uk/ac/sanger/artemis/Feature.java java/artemis.17.0.1/uk/ac/sanger/artemis/FeatureChangeEvent.class java/artemis.17.0.1/uk/ac/sanger/artemis/FeatureChangeEvent.java java/artemis.17.0.1/uk/ac/sanger/artemis/FeatureChangeListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/FeatureChangeListener.java java/artemis.17.0.1/uk/ac/sanger/artemis/FeatureEnumeration.class java/artemis.17.0.1/uk/ac/sanger/artemis/FeatureEnumeration.java java/artemis.17.0.1/uk/ac/sanger/artemis/FeatureFromVectorPredicate.class java/artemis.17.0.1/uk/ac/sanger/artemis/FeatureFromVectorPredicate.java java/artemis.17.0.1/uk/ac/sanger/artemis/FeatureKeyPredicate.class java/artemis.17.0.1/uk/ac/sanger/artemis/FeatureKeyPredicate.java java/artemis.17.0.1/uk/ac/sanger/artemis/FeatureKeyQualifierPredicate.class java/artemis.17.0.1/uk/ac/sanger/artemis/FeatureKeyQualifierPredicate.java java/artemis.17.0.1/uk/ac/sanger/artemis/FeaturePatternPredicate.class java/artemis.17.0.1/uk/ac/sanger/artemis/FeaturePatternPredicate.java java/artemis.17.0.1/uk/ac/sanger/artemis/FeaturePredicate.class java/artemis.17.0.1/uk/ac/sanger/artemis/FeaturePredicate.java java/artemis.17.0.1/uk/ac/sanger/artemis/FeaturePredicateConjunction.class java/artemis.17.0.1/uk/ac/sanger/artemis/FeaturePredicateConjunction.java java/artemis.17.0.1/uk/ac/sanger/artemis/FeaturePredicateVector.class java/artemis.17.0.1/uk/ac/sanger/artemis/FeaturePredicateVector.java java/artemis.17.0.1/uk/ac/sanger/artemis/FeatureSegment.class java/artemis.17.0.1/uk/ac/sanger/artemis/FeatureSegment.java java/artemis.17.0.1/uk/ac/sanger/artemis/FeatureSegmentVector.class java/artemis.17.0.1/uk/ac/sanger/artemis/FeatureSegmentVector.java java/artemis.17.0.1/uk/ac/sanger/artemis/FeatureVector.class java/artemis.17.0.1/uk/ac/sanger/artemis/FeatureVector.java java/artemis.17.0.1/uk/ac/sanger/artemis/FilteredEntryGroup$1.class java/artemis.17.0.1/uk/ac/sanger/artemis/FilteredEntryGroup$2.class java/artemis.17.0.1/uk/ac/sanger/artemis/FilteredEntryGroup$3.class java/artemis.17.0.1/uk/ac/sanger/artemis/LastSegmentException.class java/artemis.17.0.1/uk/ac/sanger/artemis/FilteredEntryGroup.class java/artemis.17.0.1/uk/ac/sanger/artemis/FilteredEntryGroup.java java/artemis.17.0.1/uk/ac/sanger/artemis/GotoEvent.class java/artemis.17.0.1/uk/ac/sanger/artemis/GotoEvent.java java/artemis.17.0.1/uk/ac/sanger/artemis/GotoEventSource.class java/artemis.17.0.1/uk/ac/sanger/artemis/GotoEventSource.java java/artemis.17.0.1/uk/ac/sanger/artemis/GotoListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/GotoListener.java java/artemis.17.0.1/uk/ac/sanger/artemis/LastSegmentException.java java/artemis.17.0.1/uk/ac/sanger/artemis/Logger.class java/artemis.17.0.1/uk/ac/sanger/artemis/Logger.java java/artemis.17.0.1/uk/ac/sanger/artemis/MSPcrunchComparisonData.class java/artemis.17.0.1/uk/ac/sanger/artemis/MSPcrunchComparisonData.java java/artemis.17.0.1/uk/ac/sanger/artemis/MUMmerComparisonData.class java/artemis.17.0.1/uk/ac/sanger/artemis/MUMmerComparisonData.java java/artemis.17.0.1/uk/ac/sanger/artemis/MegaBlastComparisonData.class java/artemis.17.0.1/uk/ac/sanger/artemis/MegaBlastComparisonData.java java/artemis.17.0.1/uk/ac/sanger/artemis/OptionChangeEvent.class java/artemis.17.0.1/uk/ac/sanger/artemis/OptionChangeEvent.java java/artemis.17.0.1/uk/ac/sanger/artemis/OptionChangeListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/OptionChangeListener.java java/artemis.17.0.1/uk/ac/sanger/artemis/Options.class java/artemis.17.0.1/uk/ac/sanger/artemis/Options.java java/artemis.17.0.1/uk/ac/sanger/artemis/PositionComparator.class java/artemis.17.0.1/uk/ac/sanger/artemis/ProcessMonitor.class java/artemis.17.0.1/uk/ac/sanger/artemis/ProcessMonitor.java java/artemis.17.0.1/uk/ac/sanger/artemis/SSAHAComparisonData.class java/artemis.17.0.1/uk/ac/sanger/artemis/SSAHAComparisonData.java java/artemis.17.0.1/uk/ac/sanger/artemis/Selectable.class java/artemis.17.0.1/uk/ac/sanger/artemis/Selectable.java java/artemis.17.0.1/uk/ac/sanger/artemis/Selection.class java/artemis.17.0.1/uk/ac/sanger/artemis/Selection.java java/artemis.17.0.1/uk/ac/sanger/artemis/SelectionChangeEvent.class java/artemis.17.0.1/uk/ac/sanger/artemis/SelectionChangeEvent.java java/artemis.17.0.1/uk/ac/sanger/artemis/SelectionChangeListener.class java/artemis.17.0.1/uk/ac/sanger/artemis/SelectionChangeListener.java java/artemis.17.0.1/uk/ac/sanger/artemis/SimpleComparisonData.class java/artemis.17.0.1/uk/ac/sanger/artemis/SimpleComparisonData.java java/artemis.17.0.1/uk/ac/sanger/artemis/SimpleEntryGroup$FeatureEnumerator.class java/artemis.17.0.1/uk/ac/sanger/artemis/SimpleEntryGroup.class java/artemis.17.0.1/uk/ac/sanger/artemis/SimpleEntryGroup.java java/artemis.17.0.1/uk/ac/sanger/artemis/SimpleExternalProgramMonitor.class java/artemis.17.0.1/uk/ac/sanger/artemis/SimpleExternalProgramMonitor.java java/artemis.17.0.1/uk/ac/sanger/artemis/SimpleGotoEventSource.class java/artemis.17.0.1/uk/ac/sanger/artemis/SimpleGotoEventSource.java java/artemis.17.0.1/art.bak2 java/artemis.17.0.1/Makefile java/artemis.17.0.1/README.md java/artemis.17.0.1/act java/artemis.17.0.1/art java/artemis.17.0.1/art.bak java/artemis.17.0.1/bamview java/artemis.17.0.1/dnaplotter java/artemis.17.0.1/setenv java/bioLegato.1.1.0/ java/bioLegato.1.1.0/README.txt java/bioLegato.1.1.0/biolegato.jar java/bioLegato.1.1.0/biopcd.jar java/bioLegato.1.1.0/biopcdedit.jar java/bioLegato.1.1.0/docs java/bioLegato.1.1.0/gde2pcd.jar java/bioLegato.1.1.0/image.jar java/bioLegato.1.1.0/manpage.txt java/bioLegato.1.1.0/pcdcanvas.jar java/bioLegato.1.1.0/sequence.jar java/bioLegato.1.1.0/table.jar java/bioLegato.1.1.0/src/ java/bioLegato.1.1.0/src/BioPCD/ java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/ java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/bin/ java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/bin/gde2pcd.jar java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/src/ java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/src/org/ java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/src/org/biolegato/ java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/src/org/biolegato/gde2pcd/ java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/src/org/biolegato/gde2pcd/GDE2PCD.java java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/src/org/biolegato/gde2pcd/GDEMakeMenus.java java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/src/org/biolegato/gde2pcd/GDEMenu.java java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/src/org/biolegato/gde2pcd/GDEMenuParser.java java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/src/usage.txt java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/.DS_Store java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/.cvsignore java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/build.old java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/build.xml java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/package.properties java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/docs/ java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/docs/org/ java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/docs/org/biolegato/ java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/docs/org/biolegato/gde2pcd/ java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/docs/org/biolegato/gde2pcd/GDE2PCD.html java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/docs/org/biolegato/gde2pcd/GDEMakeMenus.html java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/docs/org/biolegato/gde2pcd/GDEMenu.html java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/docs/org/biolegato/gde2pcd/GDEMenuParser.html java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/docs/org/biolegato/gde2pcd/package-frame.html java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/docs/org/biolegato/gde2pcd/package-summary.html java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/docs/org/biolegato/gde2pcd/package-tree.html java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/docs/org/biolegato/gde2pcd/class-use/ java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/docs/org/biolegato/gde2pcd/class-use/GDEMenuParser.html java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/docs/org/biolegato/gde2pcd/class-use/GDEMenu.html java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/docs/org/biolegato/gde2pcd/class-use/GDEMakeMenus.html java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/docs/org/biolegato/gde2pcd/class-use/GDE2PCD.html java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/docs/org/biolegato/gde2pcd/package-use.html java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/docs/package-list java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/docs/constant-values.html java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/docs/overview-tree.html java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/docs/index-all.html java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/docs/deprecated-list.html java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/docs/allclasses-frame.html java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/docs/allclasses-noframe.html java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/docs/index.html java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/docs/help-doc.html java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/docs/stylesheet.css java/bioLegato.1.1.0/src/BioPCD/GDE2PCD/docs/script.js java/bioLegato.1.1.0/src/BioPCD/bin/ java/bioLegato.1.1.0/src/BioPCD/bin/biopcd.jar java/bioLegato.1.1.0/src/BioPCD/bin/gde2pcd.jar java/bioLegato.1.1.0/src/BioPCD/parser/ java/bioLegato.1.1.0/src/BioPCD/parser/bin/ java/bioLegato.1.1.0/src/BioPCD/parser/bin/biopcd.jar java/bioLegato.1.1.0/src/BioPCD/parser/src/ java/bioLegato.1.1.0/src/BioPCD/parser/src/org/ java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/ java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/icons/ java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/icons/checkbox.png java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/icons/choice_list.svg java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/icons/choicelist.png java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/icons/chooser.png java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/icons/combobox.png java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/icons/commandbutton.png java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/icons/dirchooser.png java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/icons/filechooser.png java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/icons/numberwidget.png java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/icons/panelwidget.png java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/icons/tabbedwidget.png java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/icons/tempfile.png java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/icons/textwidget.png java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/parser/ java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/parser/CommandThread.java java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/parser/CommandThread.java.v1.02 java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/parser/PCDIO.java java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/parser/PCDIO.java.1.0.4.bak1 java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/parser/PCDMenuVisitor java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/parser/PCDIO.java~ java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/parser/PCDObject.java java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/parser/PCDMenuVisitor~ java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/parser/RunWindow.java java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/parser/StreamCopier.java java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/parser/SystemToken.java java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/parser/pcd.jj.v1.0.4.bak1 java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/parser/pcd.jj.v1.0.4.bak2 java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/parser/pcd.jjt java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/parser/pcd.jjt.old java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/parser/pcd.jjt~ java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/parser/pcd.jj~ java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/parser/pcd.jjt.1.0.5.1 java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/parser/pcd.jjt.bak1 java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/parser/PreProcess.java java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/parser/PreProcess.java.bak1 java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/sql/ java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/sql/JDBCDBConnection.java java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/sql/PCDSQL.java java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/widgets/ java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/widgets/WidgetTransferHandler.java java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/widgets/AbstractFileChooser.java java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/widgets/ChoiceList.java java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/widgets/Chooser.java java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/widgets/CloseableWindow.java java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/widgets/ComboBoxWidget.java java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/widgets/CommandButton.java java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/widgets/DirectoryChooser.java java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/widgets/FileChooser.java java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/widgets/ListWidget.java java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/widgets/NumberWidget.java java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/widgets/PanelWidget.java java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/widgets/SimpleWidget.java java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/widgets/TabbedWidget.java java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/widgets/TempFile.java java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/widgets/TempFile.java.1.0.4.bak2 java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/widgets/TempFile.java.bak1 java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/widgets/TempFile.java.bak2 java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/widgets/TextAreaWidget.java java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/widgets/TempFile.java~ java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/widgets/TextWidget.java java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/widgets/Widget.java java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/widgets/WidgetGenerator.java java/bioLegato.1.1.0/src/BioPCD/parser/src/org/biopcd/widgets/WidgetInstance.java java/bioLegato.1.1.0/src/BioPCD/parser/JJTPCDState.java java/bioLegato.1.1.0/src/BioPCD/parser/Node.java java/bioLegato.1.1.0/src/BioPCD/parser/PCDTreeConstants.java java/bioLegato.1.1.0/src/BioPCD/parser/SimpleNode.java java/bioLegato.1.1.0/src/BioPCD/parser/build.xml java/bioLegato.1.1.0/src/BioPCD/parser/package.properties java/bioLegato.1.1.0/src/BioPCD/parser/build.xml~ java/bioLegato.1.1.0/src/BioPCD/parser/docs/ java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/ java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/ java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/ java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/ASTAct.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/ASTArchList.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/ASTArchName.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/ASTBody.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/ASTBool.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/ASTbuttonFields.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/ASTContent.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/ASTDecimal.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/ASTdecimalFields.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/ASTdirFields.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/ASTfileFields.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/ASTFileFormat.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/ASTFullSQLQuery.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/ASTIdent.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/ASTlistFields.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/ASTNumber.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/ASTnumberFields.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/ASTPanel.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/ASTParam.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/ASTParseDBConnect.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/ASTparseFullMenu.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/ASTparseMenuItem.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/ASTSystemName.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/ASTTab.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/ASTtempfileFields.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/ASTText.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/ASTtextAreaFields.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/ASTtextFields.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/CommandThread.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/JJTPCDState.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/Node.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/ParseException.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/PCD.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/PCD.ARCH.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/PCD.ListType.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/PCD.OS.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/PCD.PCDMetaTokenManager.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/PCDConstants.html java/bioLegato.1.1.0/src/BioPCD/parser/docs/org/biopcd/parser/PCDIO.html 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java/bioLegato.1.1.0/src/Canvases/BioPCDEditor/build.xml java/bioLegato.1.1.0/src/Canvases/BioPCDEditor/package.properties java/bioLegato.1.1.0/src/Canvases/BioPCDEditor/docs/ java/bioLegato.1.1.0/src/Canvases/BioPCDEditor/docs/org/ java/bioLegato.1.1.0/src/Canvases/BioPCDEditor/docs/org/biopcd/ java/bioLegato.1.1.0/src/Canvases/BioPCDEditor/docs/org/biopcd/editor/ java/bioLegato.1.1.0/src/Canvases/BioPCDEditor/docs/org/biopcd/editor/MenuCanvas.html java/bioLegato.1.1.0/src/Canvases/BioPCDEditor/docs/org/biopcd/editor/MenuWidgetsPanel.html java/bioLegato.1.1.0/src/Canvases/BioPCDEditor/docs/org/biopcd/editor/PanelWidgetGenerator.html java/bioLegato.1.1.0/src/Canvases/BioPCDEditor/docs/org/biopcd/editor/PCDEditor.html java/bioLegato.1.1.0/src/Canvases/BioPCDEditor/docs/org/biopcd/editor/package-frame.html java/bioLegato.1.1.0/src/Canvases/BioPCDEditor/docs/org/biopcd/editor/package-summary.html java/bioLegato.1.1.0/src/Canvases/BioPCDEditor/docs/org/biopcd/editor/package-tree.html java/bioLegato.1.1.0/src/Canvases/BioPCDEditor/docs/org/biopcd/editor/class-use/ java/bioLegato.1.1.0/src/Canvases/BioPCDEditor/docs/org/biopcd/editor/class-use/PanelWidgetGenerator.html java/bioLegato.1.1.0/src/Canvases/BioPCDEditor/docs/org/biopcd/editor/class-use/PCDEditor.html java/bioLegato.1.1.0/src/Canvases/BioPCDEditor/docs/org/biopcd/editor/class-use/MenuWidgetsPanel.html java/bioLegato.1.1.0/src/Canvases/BioPCDEditor/docs/org/biopcd/editor/class-use/MenuCanvas.html java/bioLegato.1.1.0/src/Canvases/BioPCDEditor/docs/org/biopcd/editor/package-use.html java/bioLegato.1.1.0/src/Canvases/BioPCDEditor/docs/package-list java/bioLegato.1.1.0/src/Canvases/BioPCDEditor/docs/constant-values.html java/bioLegato.1.1.0/src/Canvases/BioPCDEditor/docs/serialized-form.html java/bioLegato.1.1.0/src/Canvases/BioPCDEditor/docs/overview-tree.html java/bioLegato.1.1.0/src/Canvases/BioPCDEditor/docs/index-all.html java/bioLegato.1.1.0/src/Canvases/BioPCDEditor/docs/deprecated-list.html java/bioLegato.1.1.0/src/Canvases/BioPCDEditor/docs/allclasses-frame.html java/bioLegato.1.1.0/src/Canvases/BioPCDEditor/docs/allclasses-noframe.html java/bioLegato.1.1.0/src/Canvases/BioPCDEditor/docs/index.html java/bioLegato.1.1.0/src/Canvases/BioPCDEditor/docs/help-doc.html java/bioLegato.1.1.0/src/Canvases/BioPCDEditor/docs/stylesheet.css java/bioLegato.1.1.0/src/Canvases/BioPCDEditor/docs/script.js java/bioLegato.1.1.0/src/Canvases/Images/ java/bioLegato.1.1.0/src/Canvases/Images/bin/ java/bioLegato.1.1.0/src/Canvases/Images/bin/image.jar java/bioLegato.1.1.0/src/Canvases/Images/src/ java/bioLegato.1.1.0/src/Canvases/Images/src/org/ java/bioLegato.1.1.0/src/Canvases/Images/src/org/biolegato/ java/bioLegato.1.1.0/src/Canvases/Images/src/org/biolegato/images/ java/bioLegato.1.1.0/src/Canvases/Images/src/org/biolegato/images/ImageCanvas.java.1.0.3.bak1 java/bioLegato.1.1.0/src/Canvases/Images/src/org/biolegato/images/ImageCanvas.java java/bioLegato.1.1.0/src/Canvases/Images/src/org/biolegato/images/ImageCanvas.java~ java/bioLegato.1.1.0/src/Canvases/Images/test/ java/bioLegato.1.1.0/src/Canvases/Images/.cvsignore java/bioLegato.1.1.0/src/Canvases/Images/build.old java/bioLegato.1.1.0/src/Canvases/Images/build.xml java/bioLegato.1.1.0/src/Canvases/Images/package.properties java/bioLegato.1.1.0/src/Canvases/Images/docs/ java/bioLegato.1.1.0/src/Canvases/Images/docs/org/ java/bioLegato.1.1.0/src/Canvases/Images/docs/org/biolegato/ java/bioLegato.1.1.0/src/Canvases/Images/docs/org/biolegato/images/ java/bioLegato.1.1.0/src/Canvases/Images/docs/org/biolegato/images/ImageCanvas.html java/bioLegato.1.1.0/src/Canvases/Images/docs/org/biolegato/images/package-frame.html java/bioLegato.1.1.0/src/Canvases/Images/docs/org/biolegato/images/package-summary.html java/bioLegato.1.1.0/src/Canvases/Images/docs/org/biolegato/images/package-tree.html java/bioLegato.1.1.0/src/Canvases/Images/docs/org/biolegato/images/class-use/ java/bioLegato.1.1.0/src/Canvases/Images/docs/org/biolegato/images/class-use/ImageCanvas.html java/bioLegato.1.1.0/src/Canvases/Images/docs/org/biolegato/images/package-use.html java/bioLegato.1.1.0/src/Canvases/Images/docs/package-list java/bioLegato.1.1.0/src/Canvases/Images/docs/constant-values.html java/bioLegato.1.1.0/src/Canvases/Images/docs/serialized-form.html java/bioLegato.1.1.0/src/Canvases/Images/docs/overview-tree.html java/bioLegato.1.1.0/src/Canvases/Images/docs/index-all.html java/bioLegato.1.1.0/src/Canvases/Images/docs/deprecated-list.html java/bioLegato.1.1.0/src/Canvases/Images/docs/allclasses-frame.html java/bioLegato.1.1.0/src/Canvases/Images/docs/allclasses-noframe.html java/bioLegato.1.1.0/src/Canvases/Images/docs/index.html java/bioLegato.1.1.0/src/Canvases/Images/docs/help-doc.html java/bioLegato.1.1.0/src/Canvases/Images/docs/stylesheet.css java/bioLegato.1.1.0/src/Canvases/Images/docs/script.js java/bioLegato.1.1.0/src/Canvases/Sequence/ java/bioLegato.1.1.0/src/Canvases/Sequence/bin/ java/bioLegato.1.1.0/src/Canvases/Sequence/bin/sequence.jar java/bioLegato.1.1.0/src/Canvases/Sequence/src/ java/bioLegato.1.1.0/src/Canvases/Sequence/src/org/ java/bioLegato.1.1.0/src/Canvases/Sequence/src/org/biolegato/ java/bioLegato.1.1.0/src/Canvases/Sequence/src/org/biolegato/sequence/ java/bioLegato.1.1.0/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/ java/bioLegato.1.1.0/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/SequenceCanvasObject.java java/bioLegato.1.1.0/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/ColourMask.java java/bioLegato.1.1.0/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/SequenceCanvas.java java/bioLegato.1.1.0/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/SequenceCanvas.java.bak1 java/bioLegato.1.1.0/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/SequenceCanvas.java~ java/bioLegato.1.1.0/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/SequenceCanvasProperties.java java/bioLegato.1.1.0/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/SequenceList.java java/bioLegato.1.1.0/src/Canvases/Sequence/src/org/biolegato/sequence/canvas/SequenceTextArea.java java/bioLegato.1.1.0/src/Canvases/Sequence/src/org/biolegato/sequence/data/ java/bioLegato.1.1.0/src/Canvases/Sequence/src/org/biolegato/sequence/data/DataFormat.java java/bioLegato.1.1.0/src/Canvases/Sequence/src/org/biolegato/sequence/data/Dataset.java java/bioLegato.1.1.0/src/Canvases/Sequence/src/org/biolegato/sequence/data/DataFormat.java~ java/bioLegato.1.1.0/src/Canvases/Sequence/src/org/biolegato/sequence/data/FastAFile.java java/bioLegato.1.1.0/src/Canvases/Sequence/src/org/biolegato/sequence/data/Dataset.java~ java/bioLegato.1.1.0/src/Canvases/Sequence/src/org/biolegato/sequence/data/GDEFile.java java/bioLegato.1.1.0/src/Canvases/Sequence/src/org/biolegato/sequence/data/FastAFile.java~ java/bioLegato.1.1.0/src/Canvases/Sequence/src/org/biolegato/sequence/data/GDEFlatfile.java java/bioLegato.1.1.0/src/Canvases/Sequence/src/org/biolegato/sequence/data/GDEFile.java~ java/bioLegato.1.1.0/src/Canvases/Sequence/src/org/biolegato/sequence/data/GenBankFile2008.java java/bioLegato.1.1.0/src/Canvases/Sequence/src/org/biolegato/sequence/data/GDEFlatfile.java~ java/bioLegato.1.1.0/src/Canvases/Sequence/src/org/biolegato/sequence/data/Seq.java java/bioLegato.1.1.0/src/Canvases/Sequence/src/org/biolegato/sequence/data/GenBankFile2008.java~ java/bioLegato.1.1.0/src/Canvases/Sequence/src/org/biolegato/sequence/data/SequenceWindow.java java/bioLegato.1.1.0/src/Canvases/Sequence/src/org/biolegato/sequence/data/Seq.java~ java/bioLegato.1.1.0/src/Canvases/Sequence/src/org/biolegato/sequence/data/SequenceWindow.java~ java/bioLegato.1.1.0/src/Canvases/Sequence/test/ java/bioLegato.1.1.0/src/Canvases/Sequence/test/org/ java/bioLegato.1.1.0/src/Canvases/Sequence/test/org/biolegato/ java/bioLegato.1.1.0/src/Canvases/Sequence/test/org/biolegato/gdesupport/ java/bioLegato.1.1.0/src/Canvases/Sequence/test/org/biolegato/gdesupport/canvas/ java/bioLegato.1.1.0/src/Canvases/Sequence/test/org/biolegato/gdesupport/data/ java/bioLegato.1.1.0/src/Canvases/Sequence/test/org/biolegato/gdesupport/mask/ java/bioLegato.1.1.0/src/Canvases/Sequence/.cvsignore java/bioLegato.1.1.0/src/Canvases/Sequence/build.old java/bioLegato.1.1.0/src/Canvases/Sequence/build.xml java/bioLegato.1.1.0/src/Canvases/Sequence/package.properties java/bioLegato.1.1.0/src/Canvases/Sequence/docs/ java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/ java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/ java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/ java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/ java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/ColourMask.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/ColourMask.MaskType.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/SequenceCanvas.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/SequenceCanvasObject.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/SequenceCanvasProperties.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/SequenceList.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/SequenceTextArea.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/package-frame.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/package-summary.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/package-tree.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/class-use/ java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/class-use/SequenceTextArea.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/class-use/SequenceList.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/class-use/SequenceCanvasProperties.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/class-use/SequenceCanvasObject.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/class-use/SequenceCanvas.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/class-use/ColourMask.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/class-use/ColourMask.MaskType.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/canvas/package-use.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/data/ java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/data/DataFormat.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/data/Dataset.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/data/FastAFile.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/data/GDEFile.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/data/GDEFlatfile.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/data/GenBankFile2008.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/data/Seq.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/data/Seq.Direction.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/data/Seq.Strandedness.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/data/Seq.Topology.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/data/Seq.Type.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/data/SequenceWindow.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/data/package-frame.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/data/package-summary.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/data/package-tree.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/data/class-use/ java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/data/class-use/SequenceWindow.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/data/class-use/Seq.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/data/class-use/Seq.Type.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/data/class-use/Seq.Direction.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/data/class-use/Seq.Topology.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/data/class-use/Seq.Strandedness.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/data/class-use/GenBankFile2008.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/data/class-use/GDEFlatfile.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/data/class-use/GDEFile.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/data/class-use/FastAFile.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/data/class-use/Dataset.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/data/class-use/DataFormat.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/org/biolegato/sequence/data/package-use.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/package-list java/bioLegato.1.1.0/src/Canvases/Sequence/docs/overview-frame.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/constant-values.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/serialized-form.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/overview-tree.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/index-all.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/deprecated-list.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/allclasses-frame.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/allclasses-noframe.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/index.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/overview-summary.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/help-doc.html java/bioLegato.1.1.0/src/Canvases/Sequence/docs/stylesheet.css java/bioLegato.1.1.0/src/Canvases/Sequence/docs/script.js java/bioLegato.1.1.0/src/Canvases/Tables/ java/bioLegato.1.1.0/src/Canvases/Tables/bin/ java/bioLegato.1.1.0/src/Canvases/Tables/bin/table.jar java/bioLegato.1.1.0/src/Canvases/Tables/src/ java/bioLegato.1.1.0/src/Canvases/Tables/src/org/ java/bioLegato.1.1.0/src/Canvases/Tables/src/org/biolegato/ java/bioLegato.1.1.0/src/Canvases/Tables/src/org/biolegato/tables/ java/bioLegato.1.1.0/src/Canvases/Tables/src/org/biolegato/tables/TableCanvas.java.1.0.4.bak1 java/bioLegato.1.1.0/src/Canvases/Tables/src/org/biolegato/tables/CSVFile.jj java/bioLegato.1.1.0/src/Canvases/Tables/src/org/biolegato/tables/CSVFile.jj.1.0.3 java/bioLegato.1.1.0/src/Canvases/Tables/src/org/biolegato/tables/CSVFile.jj.1.0.4.bak1 java/bioLegato.1.1.0/src/Canvases/Tables/src/org/biolegato/tables/CSVFile.jj.1.0.4.bak2 java/bioLegato.1.1.0/src/Canvases/Tables/src/org/biolegato/tables/CSVFile.jj.1.0.4.bak3 java/bioLegato.1.1.0/src/Canvases/Tables/src/org/biolegato/tables/RowHeaderRenderer.java java/bioLegato.1.1.0/src/Canvases/Tables/src/org/biolegato/tables/CSVFile.jj~ java/bioLegato.1.1.0/src/Canvases/Tables/src/org/biolegato/tables/TSVFile.jj java/bioLegato.1.1.0/src/Canvases/Tables/src/org/biolegato/tables/TSVFile.jj.1.0.3 java/bioLegato.1.1.0/src/Canvases/Tables/src/org/biolegato/tables/TSVFile.jj.1.0.4.bak1 java/bioLegato.1.1.0/src/Canvases/Tables/src/org/biolegato/tables/TSVFile.jj.1.0.4.bak2 java/bioLegato.1.1.0/src/Canvases/Tables/src/org/biolegato/tables/TableCanvas.java java/bioLegato.1.1.0/src/Canvases/Tables/src/org/biolegato/tables/TSVFile.jj~ java/bioLegato.1.1.0/src/Canvases/Tables/src/org/biolegato/tables/TableCanvas.java.1.0.4.bak2 java/bioLegato.1.1.0/src/Canvases/Tables/src/org/biolegato/tables/TableCanvas.java.1.0.4.fix1 java/bioLegato.1.1.0/src/Canvases/Tables/src/org/biolegato/tables/TableCanvas.java.bak2 java/bioLegato.1.1.0/src/Canvases/Tables/src/org/biolegato/tables/TableCanvasProperties.java java/bioLegato.1.1.0/src/Canvases/Tables/src/org/biolegato/tables/TableCanvas.java~ java/bioLegato.1.1.0/src/Canvases/Tables/src/org/biolegato/tables/TableRowModel.java java/bioLegato.1.1.0/src/Canvases/Tables/test/ java/bioLegato.1.1.0/src/Canvases/Tables/test/org/ java/bioLegato.1.1.0/src/Canvases/Tables/test/org/biolegato/ java/bioLegato.1.1.0/src/Canvases/Tables/test/org/biolegato/tables/ java/bioLegato.1.1.0/src/Canvases/Tables/.cvsignore java/bioLegato.1.1.0/src/Canvases/Tables/build.old java/bioLegato.1.1.0/src/Canvases/Tables/build.xml java/bioLegato.1.1.0/src/Canvases/Tables/package.properties java/bioLegato.1.1.0/src/Canvases/Tables/docs/ java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/ java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/ java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/ java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/CSVFile.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/CSVFileConstants.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/CSVFileTokenManager.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/ParseException.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/RowHeaderRenderer.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/SimpleCharStream.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/TableCanvas.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/TableCanvas.SelectionMode.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/TableCanvasProperties.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/Token.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/TokenMgrError.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/TSVFile.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/TSVFileConstants.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/TSVFileTokenManager.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/package-frame.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/package-summary.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/package-tree.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/class-use/ java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/class-use/TokenMgrError.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/class-use/Token.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/class-use/TableCanvasProperties.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/class-use/TableCanvas.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/class-use/TableCanvas.SelectionMode.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/class-use/TSVFileTokenManager.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/class-use/TSVFileConstants.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/class-use/TSVFile.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/class-use/SimpleCharStream.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/class-use/RowHeaderRenderer.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/class-use/ParseException.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/class-use/CSVFileTokenManager.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/class-use/CSVFileConstants.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/class-use/CSVFile.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/org/biolegato/tables/package-use.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/package-list java/bioLegato.1.1.0/src/Canvases/Tables/docs/constant-values.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/serialized-form.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/overview-tree.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/index-all.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/deprecated-list.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/allclasses-frame.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/allclasses-noframe.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/index.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/help-doc.html java/bioLegato.1.1.0/src/Canvases/Tables/docs/stylesheet.css java/bioLegato.1.1.0/src/Canvases/Tables/docs/script.js java/bioLegato.1.1.0/src/Canvases/bin/ java/bioLegato.1.1.0/src/Canvases/bin/sequence.jar java/bioLegato.1.1.0/src/Canvases/bin/table.jar java/bioLegato.1.1.0/src/Canvases/bin/image.jar java/bioLegato.1.1.0/src/Canvases/bin/pcdcanvas.jar java/bioLegato.1.1.0/src/Canvases/bin/biopcdedit.jar java/bioLegato.1.1.0/src/Canvases/biopcd/ java/bioLegato.1.1.0/src/Canvases/biopcd/bin/ java/bioLegato.1.1.0/src/Canvases/biopcd/bin/pcdcanvas.jar java/bioLegato.1.1.0/src/Canvases/biopcd/src/ java/bioLegato.1.1.0/src/Canvases/biopcd/src/org/ java/bioLegato.1.1.0/src/Canvases/biopcd/src/org/biopcd/ java/bioLegato.1.1.0/src/Canvases/biopcd/src/org/biopcd/canvas/ java/bioLegato.1.1.0/src/Canvases/biopcd/src/org/biopcd/canvas/PCDCanvas.java.1.0.3.bak1 java/bioLegato.1.1.0/src/Canvases/biopcd/src/org/biopcd/canvas/PCDCanvas.java java/bioLegato.1.1.0/src/Canvases/biopcd/src/org/biopcd/canvas/ValuesFile.jj java/bioLegato.1.1.0/src/Canvases/biopcd/src/org/biopcd/canvas/PCDCanvas.java~ java/bioLegato.1.1.0/src/Canvases/biopcd/build.xml java/bioLegato.1.1.0/src/Canvases/biopcd/package.properties java/bioLegato.1.1.0/src/Canvases/biopcd/docs/ java/bioLegato.1.1.0/src/Canvases/biopcd/docs/org/ java/bioLegato.1.1.0/src/Canvases/biopcd/docs/org/biopcd/ java/bioLegato.1.1.0/src/Canvases/biopcd/docs/org/biopcd/canvas/ java/bioLegato.1.1.0/src/Canvases/biopcd/docs/org/biopcd/canvas/ParseException.html java/bioLegato.1.1.0/src/Canvases/biopcd/docs/org/biopcd/canvas/PCDCanvas.html java/bioLegato.1.1.0/src/Canvases/biopcd/docs/org/biopcd/canvas/SimpleCharStream.html java/bioLegato.1.1.0/src/Canvases/biopcd/docs/org/biopcd/canvas/Token.html java/bioLegato.1.1.0/src/Canvases/biopcd/docs/org/biopcd/canvas/TokenMgrError.html java/bioLegato.1.1.0/src/Canvases/biopcd/docs/org/biopcd/canvas/ValuesFile.html java/bioLegato.1.1.0/src/Canvases/biopcd/docs/org/biopcd/canvas/ValuesFileConstants.html java/bioLegato.1.1.0/src/Canvases/biopcd/docs/org/biopcd/canvas/ValuesFileTokenManager.html java/bioLegato.1.1.0/src/Canvases/biopcd/docs/org/biopcd/canvas/package-frame.html java/bioLegato.1.1.0/src/Canvases/biopcd/docs/org/biopcd/canvas/package-summary.html java/bioLegato.1.1.0/src/Canvases/biopcd/docs/org/biopcd/canvas/package-tree.html java/bioLegato.1.1.0/src/Canvases/biopcd/docs/org/biopcd/canvas/class-use/ java/bioLegato.1.1.0/src/Canvases/biopcd/docs/org/biopcd/canvas/class-use/ValuesFileTokenManager.html java/bioLegato.1.1.0/src/Canvases/biopcd/docs/org/biopcd/canvas/class-use/ValuesFileConstants.html java/bioLegato.1.1.0/src/Canvases/biopcd/docs/org/biopcd/canvas/class-use/ValuesFile.html java/bioLegato.1.1.0/src/Canvases/biopcd/docs/org/biopcd/canvas/class-use/TokenMgrError.html java/bioLegato.1.1.0/src/Canvases/biopcd/docs/org/biopcd/canvas/class-use/Token.html java/bioLegato.1.1.0/src/Canvases/biopcd/docs/org/biopcd/canvas/class-use/SimpleCharStream.html java/bioLegato.1.1.0/src/Canvases/biopcd/docs/org/biopcd/canvas/class-use/ParseException.html java/bioLegato.1.1.0/src/Canvases/biopcd/docs/org/biopcd/canvas/class-use/PCDCanvas.html java/bioLegato.1.1.0/src/Canvases/biopcd/docs/org/biopcd/canvas/package-use.html java/bioLegato.1.1.0/src/Canvases/biopcd/docs/package-list java/bioLegato.1.1.0/src/Canvases/biopcd/docs/constant-values.html java/bioLegato.1.1.0/src/Canvases/biopcd/docs/serialized-form.html java/bioLegato.1.1.0/src/Canvases/biopcd/docs/overview-tree.html java/bioLegato.1.1.0/src/Canvases/biopcd/docs/index-all.html java/bioLegato.1.1.0/src/Canvases/biopcd/docs/deprecated-list.html java/bioLegato.1.1.0/src/Canvases/biopcd/docs/allclasses-frame.html java/bioLegato.1.1.0/src/Canvases/biopcd/docs/allclasses-noframe.html java/bioLegato.1.1.0/src/Canvases/biopcd/docs/index.html java/bioLegato.1.1.0/src/Canvases/biopcd/docs/help-doc.html java/bioLegato.1.1.0/src/Canvases/biopcd/docs/stylesheet.css java/bioLegato.1.1.0/src/Canvases/biopcd/docs/script.js java/bioLegato.1.1.0/src/Canvases/dbpcd/ java/bioLegato.1.1.0/src/Canvases/dbpcd/bin/ java/bioLegato.1.1.0/src/Canvases/dbpcd/bin/dbcanvas.jar java/bioLegato.1.1.0/src/Canvases/dbpcd/bin/hsqldb.jar java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/ java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/ java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/ java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/ java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/ java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/EntriesListModel.Entry.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/DBCanvas.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/DBPCD.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/DBPCDConstants.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/DBPCDTokenManager.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/DBSchema.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/ValuesFileTokenManager.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/EntriesListModel.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/JDBCDBConnection.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/PCDSQL.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/ParseException.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/SchemaListModel.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/SimpleCharStream.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/Token.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/TokenMgrError.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/ValuesFile.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/class-use/ValuesFileConstants.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/fields/ java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/ java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/BooleanField.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/DBCommand.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/DBCommandThread.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/DBField.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/DBTextField.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/DecimalField.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/KeyableField.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/NumberField.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/fields/class-use/ReferenceField.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/fields/BooleanField.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/fields/DBCommand.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/fields/DBCommandThread.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/fields/DBField.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/fields/DBTextField.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/fields/DecimalField.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/fields/KeyableField.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/fields/NumberField.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/fields/ReferenceField.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/fields/package-frame.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/fields/package-summary.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/fields/package-tree.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/fields/package-use.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/ java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/class-use/ java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/class-use/FieldTransferHandler.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/class-use/FieldGenerator.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/class-use/SchemaFieldsPanel.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/FieldTransferHandler.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/FieldGenerator.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/SchemaFieldsPanel.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/package-frame.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/package-summary.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/package-tree.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/schemaeditor/package-use.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/EntriesListModel.Entry.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/DBCanvas.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/DBPCD.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/DBPCDConstants.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/DBPCDTokenManager.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/DBSchema.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/ValuesFileTokenManager.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/EntriesListModel.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/JDBCDBConnection.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/PCDSQL.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/ParseException.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/SchemaListModel.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/SimpleCharStream.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/Token.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/TokenMgrError.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/ValuesFile.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/ValuesFileConstants.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/package-frame.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/package-summary.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/package-tree.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/org/biolegato/database/package-use.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/resources/ java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/resources/background.gif java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/resources/tab.gif java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/resources/titlebar.gif java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/resources/titlebar_end.gif java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/allclasses-frame.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/allclasses-noframe.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/constant-values.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/deprecated-list.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/help-doc.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/index-all.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/index.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/overview-frame.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/overview-summary.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/overview-tree.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/package-list java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/serialized-form.html java/bioLegato.1.1.0/src/Canvases/dbpcd/docs/stylesheet.css java/bioLegato.1.1.0/src/Canvases/dbpcd/lib/ java/bioLegato.1.1.0/src/Canvases/dbpcd/lib/hsqldb.jar java/bioLegato.1.1.0/src/Canvases/dbpcd/src/ java/bioLegato.1.1.0/src/Canvases/dbpcd/src/org/ java/bioLegato.1.1.0/src/Canvases/dbpcd/src/org/biolegato/ java/bioLegato.1.1.0/src/Canvases/dbpcd/src/org/biolegato/database/ java/bioLegato.1.1.0/src/Canvases/dbpcd/src/org/biolegato/database/fields/ java/bioLegato.1.1.0/src/Canvases/dbpcd/src/org/biolegato/database/fields/BooleanField.java java/bioLegato.1.1.0/src/Canvases/dbpcd/src/org/biolegato/database/fields/DBCommand.java java/bioLegato.1.1.0/src/Canvases/dbpcd/src/org/biolegato/database/fields/DBCommandThread.java java/bioLegato.1.1.0/src/Canvases/dbpcd/src/org/biolegato/database/fields/DBField.java java/bioLegato.1.1.0/src/Canvases/dbpcd/src/org/biolegato/database/fields/DBTextField.java java/bioLegato.1.1.0/src/Canvases/dbpcd/src/org/biolegato/database/fields/DecimalField.java java/bioLegato.1.1.0/src/Canvases/dbpcd/src/org/biolegato/database/fields/KeyableField.java java/bioLegato.1.1.0/src/Canvases/dbpcd/src/org/biolegato/database/fields/NumberField.java java/bioLegato.1.1.0/src/Canvases/dbpcd/src/org/biolegato/database/fields/ReferenceField.java java/bioLegato.1.1.0/src/Canvases/dbpcd/src/org/biolegato/database/schemaeditor/ java/bioLegato.1.1.0/src/Canvases/dbpcd/src/org/biolegato/database/schemaeditor/FieldTransferHandler.java java/bioLegato.1.1.0/src/Canvases/dbpcd/src/org/biolegato/database/schemaeditor/FieldGenerator.java java/bioLegato.1.1.0/src/Canvases/dbpcd/src/org/biolegato/database/schemaeditor/SchemaFieldsPanel.java java/bioLegato.1.1.0/src/Canvases/dbpcd/src/org/biolegato/database/DBCanvas.java java/bioLegato.1.1.0/src/Canvases/dbpcd/src/org/biolegato/database/DBSchema.java java/bioLegato.1.1.0/src/Canvases/dbpcd/src/org/biolegato/database/EntriesListModel.java java/bioLegato.1.1.0/src/Canvases/dbpcd/src/org/biolegato/database/JDBCDBConnection.java java/bioLegato.1.1.0/src/Canvases/dbpcd/src/org/biolegato/database/PCDSQL.java java/bioLegato.1.1.0/src/Canvases/dbpcd/src/org/biolegato/database/SchemaListModel.java java/bioLegato.1.1.0/src/Canvases/dbpcd/src/org/biolegato/database/ValuesFile.jj java/bioLegato.1.1.0/src/Canvases/dbpcd/src/org/biolegato/database/dbpcd.jj java/bioLegato.1.1.0/src/Canvases/dbpcd/build.xml java/bioLegato.1.1.0/src/Canvases/dbpcd/package.properties java/bioLegato.1.1.0/src/Canvases/.DS_Store java/bioLegato.1.1.0/src/Canvases/build.xml java/bioLegato.1.1.0/src/Canvases/docs/ java/bioLegato.1.1.0/src/Canvases/docs/Sequence/ java/bioLegato.1.1.0/src/Canvases/docs/Sequence/allclasses-frame.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/allclasses-noframe.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/constant-values.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/deprecated-list.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/help-doc.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/index-all.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/index.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/ java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/ java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/ java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/canvas/ java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/canvas/ColourMask.MaskType.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/canvas/ColourMask.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/canvas/SequenceCanvas.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/canvas/SequenceCanvasObject.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/canvas/SequenceCanvasProperties.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/canvas/SequenceList.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/canvas/SequenceTextArea.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/canvas/class-use/ java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/canvas/class-use/ColourMask.MaskType.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/canvas/class-use/ColourMask.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/canvas/class-use/SequenceCanvas.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/canvas/class-use/SequenceCanvasObject.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/canvas/class-use/SequenceCanvasProperties.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/canvas/class-use/SequenceList.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/canvas/class-use/SequenceTextArea.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/canvas/package-frame.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/canvas/package-summary.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/canvas/package-tree.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/canvas/package-use.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/data/ java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/data/DataFormat.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/data/Dataset.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/data/FastAFile.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/data/GDEFile.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/data/GDEFlatfile.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/data/GenBankFile2008.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/data/Seq.Direction.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/data/Seq.Strandedness.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/data/Seq.Topology.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/data/Seq.Type.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/data/Seq.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/data/SequenceWindow.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/data/class-use/ java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/data/class-use/DataFormat.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/data/class-use/Dataset.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/data/class-use/FastAFile.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/data/class-use/GDEFile.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/data/class-use/GDEFlatfile.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/data/class-use/GenBankFile2008.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/data/class-use/Seq.Direction.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/data/class-use/Seq.Strandedness.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/data/class-use/Seq.Topology.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/data/class-use/Seq.Type.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/data/class-use/Seq.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/data/class-use/SequenceWindow.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/data/package-frame.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/data/package-summary.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/data/package-tree.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/org/biolegato/sequence/data/package-use.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/overview-frame.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/overview-summary.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/overview-tree.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/package-list java/bioLegato.1.1.0/src/Canvases/docs/Sequence/script.js java/bioLegato.1.1.0/src/Canvases/docs/Sequence/serialized-form.html java/bioLegato.1.1.0/src/Canvases/docs/Sequence/stylesheet.css java/bioLegato.1.1.0/src/Canvases/docs/Tables/ java/bioLegato.1.1.0/src/Canvases/docs/Tables/allclasses-frame.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/allclasses-noframe.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/constant-values.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/deprecated-list.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/help-doc.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/index-all.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/index.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/ java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/ java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/ java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/CSVFile.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/CSVFileConstants.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/CSVFileTokenManager.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/ParseException.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/RowHeaderRenderer.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/SimpleCharStream.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/TSVFile.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/TSVFileConstants.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/TSVFileTokenManager.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/TableCanvas.SelectionMode.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/TableCanvas.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/TableCanvasProperties.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/Token.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/TokenMgrError.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/class-use/ java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/class-use/CSVFile.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/class-use/CSVFileConstants.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/class-use/CSVFileTokenManager.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/class-use/ParseException.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/class-use/RowHeaderRenderer.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/class-use/SimpleCharStream.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/class-use/TSVFile.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/class-use/TSVFileConstants.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/class-use/TSVFileTokenManager.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/class-use/TableCanvas.SelectionMode.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/class-use/TableCanvas.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/class-use/TableCanvasProperties.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/class-use/Token.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/class-use/TokenMgrError.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/package-frame.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/package-summary.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/package-tree.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/org/biolegato/tables/package-use.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/overview-tree.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/package-list java/bioLegato.1.1.0/src/Canvases/docs/Tables/script.js java/bioLegato.1.1.0/src/Canvases/docs/Tables/serialized-form.html java/bioLegato.1.1.0/src/Canvases/docs/Tables/stylesheet.css java/bioLegato.1.1.0/src/Canvases/docs/Images/ java/bioLegato.1.1.0/src/Canvases/docs/Images/allclasses-frame.html java/bioLegato.1.1.0/src/Canvases/docs/Images/allclasses-noframe.html java/bioLegato.1.1.0/src/Canvases/docs/Images/constant-values.html java/bioLegato.1.1.0/src/Canvases/docs/Images/deprecated-list.html java/bioLegato.1.1.0/src/Canvases/docs/Images/help-doc.html java/bioLegato.1.1.0/src/Canvases/docs/Images/index-all.html java/bioLegato.1.1.0/src/Canvases/docs/Images/index.html java/bioLegato.1.1.0/src/Canvases/docs/Images/org/ java/bioLegato.1.1.0/src/Canvases/docs/Images/org/biolegato/ java/bioLegato.1.1.0/src/Canvases/docs/Images/org/biolegato/images/ java/bioLegato.1.1.0/src/Canvases/docs/Images/org/biolegato/images/ImageCanvas.html java/bioLegato.1.1.0/src/Canvases/docs/Images/org/biolegato/images/class-use/ java/bioLegato.1.1.0/src/Canvases/docs/Images/org/biolegato/images/class-use/ImageCanvas.html java/bioLegato.1.1.0/src/Canvases/docs/Images/org/biolegato/images/package-frame.html java/bioLegato.1.1.0/src/Canvases/docs/Images/org/biolegato/images/package-summary.html java/bioLegato.1.1.0/src/Canvases/docs/Images/org/biolegato/images/package-tree.html java/bioLegato.1.1.0/src/Canvases/docs/Images/org/biolegato/images/package-use.html java/bioLegato.1.1.0/src/Canvases/docs/Images/overview-tree.html java/bioLegato.1.1.0/src/Canvases/docs/Images/package-list java/bioLegato.1.1.0/src/Canvases/docs/Images/script.js java/bioLegato.1.1.0/src/Canvases/docs/Images/serialized-form.html java/bioLegato.1.1.0/src/Canvases/docs/Images/stylesheet.css java/bioLegato.1.1.0/src/Canvases/docs/biopcd/ java/bioLegato.1.1.0/src/Canvases/docs/biopcd/allclasses-frame.html java/bioLegato.1.1.0/src/Canvases/docs/biopcd/allclasses-noframe.html java/bioLegato.1.1.0/src/Canvases/docs/biopcd/constant-values.html java/bioLegato.1.1.0/src/Canvases/docs/biopcd/deprecated-list.html java/bioLegato.1.1.0/src/Canvases/docs/biopcd/help-doc.html java/bioLegato.1.1.0/src/Canvases/docs/biopcd/index-all.html java/bioLegato.1.1.0/src/Canvases/docs/biopcd/index.html java/bioLegato.1.1.0/src/Canvases/docs/biopcd/org/ java/bioLegato.1.1.0/src/Canvases/docs/biopcd/org/biopcd/ java/bioLegato.1.1.0/src/Canvases/docs/biopcd/org/biopcd/canvas/ java/bioLegato.1.1.0/src/Canvases/docs/biopcd/org/biopcd/canvas/PCDCanvas.html java/bioLegato.1.1.0/src/Canvases/docs/biopcd/org/biopcd/canvas/ParseException.html java/bioLegato.1.1.0/src/Canvases/docs/biopcd/org/biopcd/canvas/SimpleCharStream.html java/bioLegato.1.1.0/src/Canvases/docs/biopcd/org/biopcd/canvas/Token.html java/bioLegato.1.1.0/src/Canvases/docs/biopcd/org/biopcd/canvas/TokenMgrError.html java/bioLegato.1.1.0/src/Canvases/docs/biopcd/org/biopcd/canvas/ValuesFile.html java/bioLegato.1.1.0/src/Canvases/docs/biopcd/org/biopcd/canvas/ValuesFileConstants.html java/bioLegato.1.1.0/src/Canvases/docs/biopcd/org/biopcd/canvas/ValuesFileTokenManager.html java/bioLegato.1.1.0/src/Canvases/docs/biopcd/org/biopcd/canvas/class-use/ java/bioLegato.1.1.0/src/Canvases/docs/biopcd/org/biopcd/canvas/class-use/PCDCanvas.html java/bioLegato.1.1.0/src/Canvases/docs/biopcd/org/biopcd/canvas/class-use/ParseException.html java/bioLegato.1.1.0/src/Canvases/docs/biopcd/org/biopcd/canvas/class-use/SimpleCharStream.html java/bioLegato.1.1.0/src/Canvases/docs/biopcd/org/biopcd/canvas/class-use/Token.html java/bioLegato.1.1.0/src/Canvases/docs/biopcd/org/biopcd/canvas/class-use/TokenMgrError.html java/bioLegato.1.1.0/src/Canvases/docs/biopcd/org/biopcd/canvas/class-use/ValuesFile.html java/bioLegato.1.1.0/src/Canvases/docs/biopcd/org/biopcd/canvas/class-use/ValuesFileConstants.html java/bioLegato.1.1.0/src/Canvases/docs/biopcd/org/biopcd/canvas/class-use/ValuesFileTokenManager.html java/bioLegato.1.1.0/src/Canvases/docs/biopcd/org/biopcd/canvas/package-frame.html java/bioLegato.1.1.0/src/Canvases/docs/biopcd/org/biopcd/canvas/package-summary.html java/bioLegato.1.1.0/src/Canvases/docs/biopcd/org/biopcd/canvas/package-tree.html java/bioLegato.1.1.0/src/Canvases/docs/biopcd/org/biopcd/canvas/package-use.html java/bioLegato.1.1.0/src/Canvases/docs/biopcd/overview-tree.html java/bioLegato.1.1.0/src/Canvases/docs/biopcd/package-list java/bioLegato.1.1.0/src/Canvases/docs/biopcd/script.js java/bioLegato.1.1.0/src/Canvases/docs/biopcd/serialized-form.html java/bioLegato.1.1.0/src/Canvases/docs/biopcd/stylesheet.css java/bioLegato.1.1.0/src/Canvases/docs/BioPCDEditor/ java/bioLegato.1.1.0/src/Canvases/docs/BioPCDEditor/allclasses-frame.html java/bioLegato.1.1.0/src/Canvases/docs/BioPCDEditor/allclasses-noframe.html java/bioLegato.1.1.0/src/Canvases/docs/BioPCDEditor/constant-values.html java/bioLegato.1.1.0/src/Canvases/docs/BioPCDEditor/deprecated-list.html java/bioLegato.1.1.0/src/Canvases/docs/BioPCDEditor/help-doc.html java/bioLegato.1.1.0/src/Canvases/docs/BioPCDEditor/index-all.html java/bioLegato.1.1.0/src/Canvases/docs/BioPCDEditor/index.html java/bioLegato.1.1.0/src/Canvases/docs/BioPCDEditor/org/ java/bioLegato.1.1.0/src/Canvases/docs/BioPCDEditor/org/biopcd/ java/bioLegato.1.1.0/src/Canvases/docs/BioPCDEditor/org/biopcd/editor/ java/bioLegato.1.1.0/src/Canvases/docs/BioPCDEditor/org/biopcd/editor/MenuCanvas.html java/bioLegato.1.1.0/src/Canvases/docs/BioPCDEditor/org/biopcd/editor/MenuWidgetsPanel.html java/bioLegato.1.1.0/src/Canvases/docs/BioPCDEditor/org/biopcd/editor/PCDEditor.html java/bioLegato.1.1.0/src/Canvases/docs/BioPCDEditor/org/biopcd/editor/PanelWidgetGenerator.html java/bioLegato.1.1.0/src/Canvases/docs/BioPCDEditor/org/biopcd/editor/class-use/ java/bioLegato.1.1.0/src/Canvases/docs/BioPCDEditor/org/biopcd/editor/class-use/MenuCanvas.html java/bioLegato.1.1.0/src/Canvases/docs/BioPCDEditor/org/biopcd/editor/class-use/MenuWidgetsPanel.html java/bioLegato.1.1.0/src/Canvases/docs/BioPCDEditor/org/biopcd/editor/class-use/PCDEditor.html java/bioLegato.1.1.0/src/Canvases/docs/BioPCDEditor/org/biopcd/editor/class-use/PanelWidgetGenerator.html java/bioLegato.1.1.0/src/Canvases/docs/BioPCDEditor/org/biopcd/editor/package-frame.html java/bioLegato.1.1.0/src/Canvases/docs/BioPCDEditor/org/biopcd/editor/package-summary.html java/bioLegato.1.1.0/src/Canvases/docs/BioPCDEditor/org/biopcd/editor/package-tree.html java/bioLegato.1.1.0/src/Canvases/docs/BioPCDEditor/org/biopcd/editor/package-use.html java/bioLegato.1.1.0/src/Canvases/docs/BioPCDEditor/overview-tree.html java/bioLegato.1.1.0/src/Canvases/docs/BioPCDEditor/package-list java/bioLegato.1.1.0/src/Canvases/docs/BioPCDEditor/script.js java/bioLegato.1.1.0/src/Canvases/docs/BioPCDEditor/serialized-form.html java/bioLegato.1.1.0/src/Canvases/docs/BioPCDEditor/stylesheet.css java/bioLegato.1.1.0/src/Core/ java/bioLegato.1.1.0/src/Core/bin/ java/bioLegato.1.1.0/src/Core/bin/biolegato.jar java/bioLegato.1.1.0/src/Core/src/ java/bioLegato.1.1.0/src/Core/src/org/ java/bioLegato.1.1.0/src/Core/src/org/biolegato/ java/bioLegato.1.1.0/src/Core/src/org/biolegato/main/ java/bioLegato.1.1.0/src/Core/src/org/biolegato/main/BLMain.java java/bioLegato.1.1.0/src/Core/src/org/biolegato/main/DataCanvas.java java/bioLegato.1.1.0/src/Core/src/org/biolegato/main/PluginLoader.java java/bioLegato.1.1.0/src/Core/src/org/biolegato/main/PluginWrapper.java java/bioLegato.1.1.0/src/Core/src/org/biolegato/main/StreamCopier.java java/bioLegato.1.1.0/src/Core/src/org/biolegato/main/BLMain.java.1.0.5.1.bak1 java/bioLegato.1.1.0/src/Core/src/org/biolegato/.DS_Store java/bioLegato.1.1.0/src/Core/src/org/.DS_Store java/bioLegato.1.1.0/src/Core/src/.DS_Store java/bioLegato.1.1.0/src/Core/src/default.properties java/bioLegato.1.1.0/src/Core/src/manpage.txt java/bioLegato.1.1.0/src/Core/src/optionlist.txt java/bioLegato.1.1.0/src/Core/test/ java/bioLegato.1.1.0/src/Core/test/org/ java/bioLegato.1.1.0/src/Core/test/org/biolegato/ java/bioLegato.1.1.0/src/Core/test/org/biolegato/main/ java/bioLegato.1.1.0/src/Core/test/org/biolegato/menu/ java/bioLegato.1.1.0/src/Core/.DS_Store java/bioLegato.1.1.0/src/Core/.cvsignore java/bioLegato.1.1.0/src/Core/build.old java/bioLegato.1.1.0/src/Core/build.xml java/bioLegato.1.1.0/src/Core/package.properties java/bioLegato.1.1.0/src/Core/pcd.xml java/bioLegato.1.1.0/src/Core/docs/ java/bioLegato.1.1.0/src/Core/docs/org/ java/bioLegato.1.1.0/src/Core/docs/org/biolegato/ java/bioLegato.1.1.0/src/Core/docs/org/biolegato/main/ java/bioLegato.1.1.0/src/Core/docs/org/biolegato/main/BLMain.html java/bioLegato.1.1.0/src/Core/docs/org/biolegato/main/DataCanvas.html java/bioLegato.1.1.0/src/Core/docs/org/biolegato/main/PluginLoader.html java/bioLegato.1.1.0/src/Core/docs/org/biolegato/main/PluginWrapper.html java/bioLegato.1.1.0/src/Core/docs/org/biolegato/main/StreamCopier.html java/bioLegato.1.1.0/src/Core/docs/org/biolegato/main/package-frame.html java/bioLegato.1.1.0/src/Core/docs/org/biolegato/main/package-summary.html java/bioLegato.1.1.0/src/Core/docs/org/biolegato/main/package-tree.html java/bioLegato.1.1.0/src/Core/docs/org/biolegato/main/class-use/ java/bioLegato.1.1.0/src/Core/docs/org/biolegato/main/class-use/StreamCopier.html java/bioLegato.1.1.0/src/Core/docs/org/biolegato/main/class-use/PluginWrapper.html java/bioLegato.1.1.0/src/Core/docs/org/biolegato/main/class-use/PluginLoader.html java/bioLegato.1.1.0/src/Core/docs/org/biolegato/main/class-use/DataCanvas.html java/bioLegato.1.1.0/src/Core/docs/org/biolegato/main/class-use/BLMain.html java/bioLegato.1.1.0/src/Core/docs/org/biolegato/main/package-use.html java/bioLegato.1.1.0/src/Core/docs/package-list java/bioLegato.1.1.0/src/Core/docs/constant-values.html java/bioLegato.1.1.0/src/Core/docs/serialized-form.html java/bioLegato.1.1.0/src/Core/docs/overview-tree.html java/bioLegato.1.1.0/src/Core/docs/index-all.html java/bioLegato.1.1.0/src/Core/docs/deprecated-list.html java/bioLegato.1.1.0/src/Core/docs/allclasses-frame.html java/bioLegato.1.1.0/src/Core/docs/allclasses-noframe.html java/bioLegato.1.1.0/src/Core/docs/index.html java/bioLegato.1.1.0/src/Core/docs/help-doc.html java/bioLegato.1.1.0/src/Core/docs/stylesheet.css java/bioLegato.1.1.0/src/Core/docs/script.js java/bioLegato.1.1.0/src/Turtle/ java/bioLegato.1.1.0/src/Turtle/bin/ java/bioLegato.1.1.0/src/Turtle/bin/turtle.jar java/bioLegato.1.1.0/src/Turtle/lib/ java/bioLegato.1.1.0/src/Turtle/lib/ant-contrib.jar java/bioLegato.1.1.0/src/Turtle/lib/ant-junit.jar java/bioLegato.1.1.0/src/Turtle/lib/javacc.jar java/bioLegato.1.1.0/src/Turtle/lib/junit-3.8.1.jar java/bioLegato.1.1.0/src/Turtle/lib/junit-4.9.jar java/bioLegato.1.1.0/src/Turtle/lib/junit.jar java/bioLegato.1.1.0/src/Turtle/lib/makeman.sh java/bioLegato.1.1.0/src/Turtle/src/ java/bioLegato.1.1.0/src/Turtle/src/manpages/ java/bioLegato.1.1.0/src/Turtle/src/manpages/CAT.man java/bioLegato.1.1.0/src/Turtle/src/manpages/CD.man java/bioLegato.1.1.0/src/Turtle/src/manpages/COMMANDS.man java/bioLegato.1.1.0/src/Turtle/src/manpages/CP.man java/bioLegato.1.1.0/src/Turtle/src/manpages/CUT.man java/bioLegato.1.1.0/src/Turtle/src/manpages/DATE.man java/bioLegato.1.1.0/src/Turtle/src/manpages/ECHO.man java/bioLegato.1.1.0/src/Turtle/src/manpages/EXPR.man java/bioLegato.1.1.0/src/Turtle/src/manpages/FGREP.man java/bioLegato.1.1.0/src/Turtle/src/manpages/GREP.man java/bioLegato.1.1.0/src/Turtle/src/manpages/HEAD.man java/bioLegato.1.1.0/src/Turtle/src/manpages/MAN.man java/bioLegato.1.1.0/src/Turtle/src/manpages/MKDIRS.man java/bioLegato.1.1.0/src/Turtle/src/manpages/MV.man java/bioLegato.1.1.0/src/Turtle/src/manpages/PASTE.man java/bioLegato.1.1.0/src/Turtle/src/manpages/PWD.man java/bioLegato.1.1.0/src/Turtle/src/manpages/REV.man java/bioLegato.1.1.0/src/Turtle/src/manpages/RM.man java/bioLegato.1.1.0/src/Turtle/src/manpages/RSORT.man java/bioLegato.1.1.0/src/Turtle/src/manpages/SORT.man java/bioLegato.1.1.0/src/Turtle/src/manpages/SYNTAX.man java/bioLegato.1.1.0/src/Turtle/src/manpages/TAIL.man java/bioLegato.1.1.0/src/Turtle/src/manpages/TR.man java/bioLegato.1.1.0/src/Turtle/src/manpages/UNIQ.man java/bioLegato.1.1.0/src/Turtle/src/manpages/WC.man java/bioLegato.1.1.0/src/Turtle/src/org/ java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/ java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/cmd/ java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/cmd/.cvsignore java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/cmd/.man java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/cmd/CAT.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/cmd/CD.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/cmd/CP.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/cmd/CUT.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/cmd/DATE.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/cmd/ECHO.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/cmd/EXPR.jj java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/cmd/FGREP.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/cmd/GREP.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/cmd/HEAD.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/cmd/MAN.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/cmd/MKDIRS.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/cmd/MV.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/cmd/PASTE.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/cmd/PWD.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/cmd/REV.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/cmd/RM.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/cmd/RSORT.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/cmd/SED.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/cmd/SED.man java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/cmd/SORT.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/cmd/TAC.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/cmd/TAIL.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/cmd/TEST.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/cmd/TR.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/cmd/UNIQ.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/cmd/WC.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/strings/ java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/strings/DoubleExecString.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/strings/ShellString.jj java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/strings/TString.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/tasks/ java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/tasks/AndTask.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/tasks/Command.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/tasks/DualTask.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/tasks/IfTask.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/tasks/LogicTask.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/tasks/OrTask.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/tasks/SequentialTask.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/tasks/TTask.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/tasks/WhileTask.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/StreamCopier.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/TEnv.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/TurtleFileWriter.java java/bioLegato.1.1.0/src/Turtle/src/org/turtleshell/turtle.jj java/bioLegato.1.1.0/src/Turtle/test/ java/bioLegato.1.1.0/src/Turtle/build.old java/bioLegato.1.1.0/src/Turtle/build.xml java/bioLegato.1.1.0/src/Turtle/package.properties java/bioLegato.1.1.0/src/Turtle/selfbuild.xml java/bioLegato.1.1.0/src/applet_work/ java/bioLegato.1.1.0/src/applet_work/image.html java/bioLegato.1.1.0/src/applet_work/list.html java/bioLegato.1.1.0/src/applet_work/pcdcanvas.html java/bioLegato.1.1.0/src/applet_work/sequence.html java/bioLegato.1.1.0/src/applet_work/sequence.jnlp java/bioLegato.1.1.0/src/applet_work/table.html java/bioLegato.1.1.0/src/bin/ java/bioLegato.1.1.0/src/bin/biopcd.jar java/bioLegato.1.1.0/src/bin/gde2pcd.jar java/bioLegato.1.1.0/src/bin/biolegato.jar java/bioLegato.1.1.0/src/bin/biopcdedit.jar java/bioLegato.1.1.0/src/bin/image.jar java/bioLegato.1.1.0/src/bin/pcdcanvas.jar java/bioLegato.1.1.0/src/bin/sequence.jar java/bioLegato.1.1.0/src/bin/table.jar java/bioLegato.1.1.0/src/lib/ java/bioLegato.1.1.0/src/lib/ant-contrib.jar java/bioLegato.1.1.0/src/lib/ant-junit.jar java/bioLegato.1.1.0/src/lib/javacc.jar java/bioLegato.1.1.0/src/lib/junit-3.8.1.jar java/bioLegato.1.1.0/src/lib/junit-4.9.jar java/bioLegato.1.1.0/src/lib/junit.jar java/bioLegato.1.1.0/src/lib/makeman.sh java/bioLegato.1.1.0/src/nbproject/ java/bioLegato.1.1.0/src/nbproject/private/ java/bioLegato.1.1.0/src/nbproject/private/private.xml java/bioLegato.1.1.0/src/nbproject/private/private.xml.0.nblh~ java/bioLegato.1.1.0/src/nbproject/.cvsignore java/bioLegato.1.1.0/src/nbproject/genfiles.properties java/bioLegato.1.1.0/src/nbproject/jdk.xml java/bioLegato.1.1.0/src/nbproject/nbjdk.properties java/bioLegato.1.1.0/src/nbproject/nbjdk.xml java/bioLegato.1.1.0/src/nbproject/project.xml java/bioLegato.1.1.0/src/nbproject/project.xml~ java/bioLegato.1.1.0/src/test/ java/bioLegato.1.1.0/src/test/all.CDS.gde java/bioLegato.1.1.0/src/test/all.gen java/bioLegato.1.1.0/src/test/all.pro.fsa java/bioLegato.1.1.0/src/test/birch_white.png java/bioLegato.1.1.0/src/test/columntest.csv java/bioLegato.1.1.0/src/test/columntest2.csv java/bioLegato.1.1.0/src/test/standard_dna.csv java/bioLegato.1.1.0/src/test/supertest.gen java/bioLegato.1.1.0/src/test/test.blimg java/bioLegato.1.1.0/src/test/test.flat java/bioLegato.1.1.0/src/test/tiger1.jpg java/bioLegato.1.1.0/src/.DS_Store java/bioLegato.1.1.0/src/.cvsignore java/bioLegato.1.1.0/src/README.txt java/bioLegato.1.1.0/src/ants.properties java/bioLegato.1.1.0/src/biolegato java/bioLegato.1.1.0/src/build.old java/bioLegato.1.1.0/src/build.xml java/bioLegato.1.1.0/src/gde2pcd.sh java/bioLegato.1.1.0/src/gde2pcd.txt java/bioLegato.1.1.0/src/todo.txt java/bioLegato.1.1.0/src/docs/ java/bioLegato.1.1.0/src/docs/BioPCD/ java/bioLegato.1.1.0/src/docs/BioPCD/GDE2PCD/ java/bioLegato.1.1.0/src/docs/BioPCD/GDE2PCD/allclasses-frame.html java/bioLegato.1.1.0/src/docs/BioPCD/GDE2PCD/allclasses-noframe.html java/bioLegato.1.1.0/src/docs/BioPCD/GDE2PCD/constant-values.html java/bioLegato.1.1.0/src/docs/BioPCD/GDE2PCD/deprecated-list.html java/bioLegato.1.1.0/src/docs/BioPCD/GDE2PCD/help-doc.html java/bioLegato.1.1.0/src/docs/BioPCD/GDE2PCD/index-all.html java/bioLegato.1.1.0/src/docs/BioPCD/GDE2PCD/index.html java/bioLegato.1.1.0/src/docs/BioPCD/GDE2PCD/org/ java/bioLegato.1.1.0/src/docs/BioPCD/GDE2PCD/org/biolegato/ 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java/bioLegato.1.1.0/src/docs/BioPCD/GDE2PCD/org/biolegato/gde2pcd/package-summary.html java/bioLegato.1.1.0/src/docs/BioPCD/GDE2PCD/org/biolegato/gde2pcd/package-tree.html java/bioLegato.1.1.0/src/docs/BioPCD/GDE2PCD/org/biolegato/gde2pcd/package-use.html java/bioLegato.1.1.0/src/docs/BioPCD/GDE2PCD/overview-tree.html java/bioLegato.1.1.0/src/docs/BioPCD/GDE2PCD/package-list java/bioLegato.1.1.0/src/docs/BioPCD/GDE2PCD/script.js java/bioLegato.1.1.0/src/docs/BioPCD/GDE2PCD/stylesheet.css java/bioLegato.1.1.0/src/docs/BioPCD/parser/ java/bioLegato.1.1.0/src/docs/BioPCD/parser/allclasses-frame.html java/bioLegato.1.1.0/src/docs/BioPCD/parser/allclasses-noframe.html java/bioLegato.1.1.0/src/docs/BioPCD/parser/constant-values.html java/bioLegato.1.1.0/src/docs/BioPCD/parser/deprecated-list.html java/bioLegato.1.1.0/src/docs/BioPCD/parser/help-doc.html java/bioLegato.1.1.0/src/docs/BioPCD/parser/index-all.html java/bioLegato.1.1.0/src/docs/BioPCD/parser/index.html java/bioLegato.1.1.0/src/docs/BioPCD/parser/org/ java/bioLegato.1.1.0/src/docs/BioPCD/parser/org/biopcd/ java/bioLegato.1.1.0/src/docs/BioPCD/parser/org/biopcd/parser/ java/bioLegato.1.1.0/src/docs/BioPCD/parser/org/biopcd/parser/ASTAct.html java/bioLegato.1.1.0/src/docs/BioPCD/parser/org/biopcd/parser/ASTArchList.html java/bioLegato.1.1.0/src/docs/BioPCD/parser/org/biopcd/parser/ASTArchName.html java/bioLegato.1.1.0/src/docs/BioPCD/parser/org/biopcd/parser/ASTBody.html java/bioLegato.1.1.0/src/docs/BioPCD/parser/org/biopcd/parser/ASTBool.html java/bioLegato.1.1.0/src/docs/BioPCD/parser/org/biopcd/parser/ASTContent.html java/bioLegato.1.1.0/src/docs/BioPCD/parser/org/biopcd/parser/ASTDecimal.html java/bioLegato.1.1.0/src/docs/BioPCD/parser/org/biopcd/parser/ASTFileFormat.html java/bioLegato.1.1.0/src/docs/BioPCD/parser/org/biopcd/parser/ASTFullSQLQuery.html java/bioLegato.1.1.0/src/docs/BioPCD/parser/org/biopcd/parser/ASTIdent.html 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java/bioLegato.1.1.0/src/docs/Canvases/biopcd/org/biopcd/canvas/class-use/ValuesFileConstants.html java/bioLegato.1.1.0/src/docs/Canvases/biopcd/org/biopcd/canvas/class-use/ValuesFileTokenManager.html java/bioLegato.1.1.0/src/docs/Canvases/biopcd/org/biopcd/canvas/package-frame.html java/bioLegato.1.1.0/src/docs/Canvases/biopcd/org/biopcd/canvas/package-summary.html java/bioLegato.1.1.0/src/docs/Canvases/biopcd/org/biopcd/canvas/package-tree.html java/bioLegato.1.1.0/src/docs/Canvases/biopcd/org/biopcd/canvas/package-use.html java/bioLegato.1.1.0/src/docs/Canvases/biopcd/overview-tree.html java/bioLegato.1.1.0/src/docs/Canvases/biopcd/package-list java/bioLegato.1.1.0/src/docs/Canvases/biopcd/script.js java/bioLegato.1.1.0/src/docs/Canvases/biopcd/serialized-form.html java/bioLegato.1.1.0/src/docs/Canvases/biopcd/stylesheet.css java/bioLegato.1.1.0/README_CreateNewVersion.txt java/bioLegato.1.1.0/ChangeLog.html java/bioLegato.1.1.0/test/ java/bioLegato.1.1.0/test/dat/ java/bioLegato.1.1.0/test/dat/blfiles/ java/bioLegato.1.1.0/test/dat/blfiles/seqcolors/ java/bioLegato.1.1.0/test/dat/blfiles/seqcolors/default.csv java/bioLegato.1.1.0/test/dat/blfiles/seqcolors/color_notes.txt java/bioLegato.1.1.0/test/dat/blfiles/seqcolors/standard_marker.csv java/bioLegato.1.1.0/test/dat/blfiles/seqcolors/~color_notes.txt java/bioLegato.1.1.0/test/dat/blfiles/blfiles.properties java/bioLegato.1.1.0/test/dat/blfiles/PCD/ java/bioLegato.1.1.0/test/dat/blfiles/PCD/File/ java/bioLegato.1.1.0/test/dat/blfiles/PCD/File/Compress.blmenu java/bioLegato.1.1.0/test/dat/blfiles/PCD/File/ConcatFiles.blmenu java/bioLegato.1.1.0/test/dat/blfiles/PCD/File/Decompress.blmenu java/bioLegato.1.1.0/test/dat/blfiles/PCD/File/DeleteFiles.blmenu java/bioLegato.1.1.0/test/dat/blfiles/PCD/File/Export.blmenu java/bioLegato.1.1.0/test/dat/blfiles/PCD/File/GetFiles.blmenu java/bioLegato.1.1.0/test/dat/blfiles/PCD/File/Makelinks.blmenu java/bioLegato.1.1.0/test/dat/blfiles/PCD/File/NewRow.blmenu java/bioLegato.1.1.0/test/dat/blfiles/PCD/File/OpenDir.blmenu java/bioLegato.1.1.0/test/dat/blfiles/PCD/File/ReName.blmenu java/bioLegato.1.1.0/test/dat/blfiles/PCD/File/Refresh.blmenu java/bioLegato.1.1.0/test/dat/blfiles/PCD/File/SaveSel.blmenu java/bioLegato.1.1.0/test/dat/blfiles/PCD/File/ShortNames.blmenu java/bioLegato.1.1.0/test/dat/blfiles/PCD/File/pcd_order java/bioLegato.1.1.0/test/dat/blfiles/PCD/File/ViewFile.blmenu java/bioLegato.1.1.0/test/dat/blfiles/PCD/pcd_order java/bioLegato.1.1.0/test/dat/blfiles/PCD/Documentation/ java/bioLegato.1.1.0/test/dat/blfiles/PCD/Documentation/ViewDoc.blmenu java/bioLegato.1.1.0/test/dat/blfiles/PCD/Documentation/pcd_order java/bioLegato.1.1.0/test/dat/blfiles/PCD/Edit/ java/bioLegato.1.1.0/test/dat/blfiles/PCD/Edit/pcd_order java/bioLegato.1.1.0/test/dat/blfiles/PCD/Edit/BLSORT.blmenu java/bioLegato.1.1.0/test/dat/blfiles/PCD/Edit/CopyOut.blmenu java/bioLegato.1.1.0/test/dat/blfiles/PCD/Edit/Extract.blmenu java/bioLegato.1.1.0/test/dat/blfiles/PCD/Edit/Extract.blmenu~ java/bioLegato.1.1.0/test/dat/blfiles/PCD/Edit/PasteIn.blmenu java/bioLegato.1.1.0/test/dat/bltable/ java/bioLegato.1.1.0/test/dat/bltable/PCD/ java/bioLegato.1.1.0/test/dat/bltable/PCD/Help java/bioLegato.1.1.0/test/dat/bltable/PCD/Documentation/ java/bioLegato.1.1.0/test/dat/bltable/PCD/Documentation/ViewDoc.blmenu java/bioLegato.1.1.0/test/dat/bltable/PCD/Documentation/pcd_order java/bioLegato.1.1.0/test/dat/bltable/PCD/Edit/ java/bioLegato.1.1.0/test/dat/bltable/PCD/Edit/PasteIn.blmenu java/bioLegato.1.1.0/test/dat/bltable/PCD/Edit/pcd_order java/bioLegato.1.1.0/test/dat/bltable/PCD/Edit/BLSORT.blmenu java/bioLegato.1.1.0/test/dat/bltable/PCD/Edit/CopyOut.blmenu java/bioLegato.1.1.0/test/dat/bltable/PCD/Edit/Extract.blmenu java/bioLegato.1.1.0/test/dat/bltable/PCD/File/ java/bioLegato.1.1.0/test/dat/bltable/PCD/File/Export.blmenu java/bioLegato.1.1.0/test/dat/bltable/PCD/File/Extract.blmenu java/bioLegato.1.1.0/test/dat/bltable/PCD/File/ImportCSV.blmenu java/bioLegato.1.1.0/test/dat/bltable/PCD/File/NewRows.blmenu java/bioLegato.1.1.0/test/dat/bltable/PCD/File/NewWindow.blmenu java/bioLegato.1.1.0/test/dat/bltable/PCD/File/PasteCSV.blmenu java/bioLegato.1.1.0/test/dat/bltable/PCD/File/PasteTSV.blmenu java/bioLegato.1.1.0/test/dat/bltable/PCD/File/PrintCSV.blmenu java/bioLegato.1.1.0/test/dat/bltable/PCD/File/PrintTSV.blmenu java/bioLegato.1.1.0/test/dat/bltable/PCD/File/SaveAs.blmenu java/bioLegato.1.1.0/test/dat/bltable/PCD/File/pcd_order java/bioLegato.1.1.0/test/dat/bltable/PCD/pcd_order java/bioLegato.1.1.0/test/dat/bltable/sample_data/ java/bioLegato.1.1.0/test/dat/bltable/sample_data/bltable_example.tsv java/bioLegato.1.1.0/test/dat/bltable/seqcolors/ java/bioLegato.1.1.0/test/dat/bltable/seqcolors/color_notes.txt java/bioLegato.1.1.0/test/dat/bltable/seqcolors/default.csv java/bioLegato.1.1.0/test/dat/bltable/seqcolors/standard_marker.csv java/bioLegato.1.1.0/test/dat/bltable/seqcolors/~color_notes.txt java/bioLegato.1.1.0/test/dat/bltable/bltable.properties java/bioLegato.1.1.0/test/dat/bltable/bltable.properties~ java/bioLegato.1.1.0/test/dat/birch_black_ico.png java/bioLegato.1.1.0/test/dat/README.txt java/bioLegato.1.1.0/test/dat/blgeneric/ java/bioLegato.1.1.0/test/dat/blgeneric/birch.properties~ java/bioLegato.1.1.0/test/dat/blgeneric/blank.obj.bak java/bioLegato.1.1.0/test/dat/blgeneric/blank.png java/bioLegato.1.1.0/test/dat/blgeneric/blgeneric.properties java/bioLegato.1.1.0/test/dat/blgeneric/ldir.param~ java/bioLegato.1.1.0/test/dat/blgeneric/splash.blimg java/bioLegato.1.1.0/test/script/ java/bioLegato.1.1.0/test/script/blfiles java/bioLegato.1.1.0/test/script/blsort.py java/bioLegato.1.1.0/test/script/bltable java/bioLegato.1.1.0/test/script/bltsv2name.py java/bioLegato.1.1.0/test/script/DirChooser2.jar java/bioLegato.1.1.0/test/script/makelinks.sh java/bioLegato.1.1.0/test/script/ConfirmBox2.jar java/bioLegato.1.1.0/test/script/ErrorBox2.jar java/bioLegato.1.1.0/test/script/OkayBox2.jar java/bioLegato.1.1.0/test/script/bldirtab.py java/bioLegato.1.1.0/test/script/README.txt java/bioLegato.1.1.0/test/script/browser.py java/bioLegato.1.1.0/test/script/chooseviewer.py java/bioLegato.1.1.0/test/script/bl_rename.py java/bioLegato.1.1.0/test/script/bl_compress.sh java/bioLegato.1.1.0/test/script/bl_decompress.sh java/bioLegato.1.1.0/test/script/bl_deletefiles.sh java/bioLegato.1.1.0/test/script/bl_alias.py java/bioLegato.1.1.0/test/script/bl_email.py java/bioLegato.1.1.0/test/script/__pycache__/ java/bioLegato.1.1.0/test/script/__pycache__/browser.cpython-36.pyc java/bioLegato.1.1.0/test/admin/ java/bioLegato.1.1.0/test/admin/setblenv.profile.linux-x86_64.source java/bioLegato.1.1.0/test/admin/setblenv.profile.osx-x86_64.source java/bioLegato.1.1.0/test/admin/README.txt java/bioLegato.1.1.0/test/bltable java/bioLegato.1.1.0/test/java/ java/bioLegato.1.1.0/test/java/bioLegato/ java/bioLegato.1.1.0/test/java/bioLegato/biolegato.jar java/bioLegato.1.1.0/test/java/bioLegato/biopcd.jar java/bioLegato.1.1.0/test/java/bioLegato/table.jar java/bioLegato.1.1.0/test/local/ java/bioLegato.1.1.0/test/local/admin/ java/bioLegato.1.1.0/test/local/README.txt java/bioLegato.1.1.0/test/local/dat/ java/bioLegato.1.1.0/test/local/dat/bltable/ java/bioLegato.1.1.0/test/local/dat/bltable/PCD/ java/bioLegato.1.1.0/test/local/dat/blfiles/ java/bioLegato.1.1.0/test/local/dat/blfiles/PCD/ java/bioLegato.1.1.0/test/local/dat/blfiles/PCD/File/ java/bioLegato.1.1.0/test/local/dat/blfiles/PCD/File/Grep.blmenu.example java/bioLegato.1.1.0/test/README.txt java/bioLegato.1.1.0/test/blfiles java/bioLegato.1.1.0/test/bin-linux-x86_64/ java/bioLegato.1.1.0/test/bin-linux-x86_64/README.txt java/bioLegato.1.1.0/test/bin-osx-x86_64/ java/bioLegato.1.1.0/test/bin-osx-x86_64/README.txt java/bioLegato.1.1.0/test/doc/ java/bioLegato.1.1.0/test/doc/README.txt java/bioLegato.1.1.0/test/doc/bioLegato/ java/bioLegato.1.1.0/test/doc/bioLegato/bl_alias.html java/bioLegato.1.1.0/test/doc/bioLegato/bl_compress.html java/bioLegato.1.1.0/test/doc/bioLegato/bl_decompress.html java/bioLegato.1.1.0/test/doc/bioLegato/bl_deletefiles.html java/bioLegato.1.1.0/test/doc/bioLegato/bl_makelinks.html java/bioLegato.1.1.0/test/doc/bioLegato/bl_rename.html java/bioLegato.1.1.0/test/doc/bioLegato/blsort.html java/bioLegato.1.1.0/test/doc/bioLegato/chooseviewer.html java/bioLegato.1.1.0/README_CreateNewVersion.txt~ java/bioLegato.1.1.0/LICENSE.txt java/bioLegato.1.1.0/LICENSE.html java/birchutils/ java/birchutils/ConfirmBox2/ java/birchutils/ConfirmBox2/dist/ java/birchutils/ConfirmBox2/dist/javadoc/ java/birchutils/ConfirmBox2/dist/javadoc/confirmbox2/ java/birchutils/ConfirmBox2/dist/javadoc/confirmbox2/class-use/ java/birchutils/ConfirmBox2/dist/javadoc/confirmbox2/class-use/ConfirmBox2.html java/birchutils/ConfirmBox2/dist/javadoc/confirmbox2/ConfirmBox2.html java/birchutils/ConfirmBox2/dist/javadoc/confirmbox2/package-frame.html java/birchutils/ConfirmBox2/dist/javadoc/confirmbox2/package-summary.html java/birchutils/ConfirmBox2/dist/javadoc/confirmbox2/package-tree.html java/birchutils/ConfirmBox2/dist/javadoc/confirmbox2/package-use.html java/birchutils/ConfirmBox2/dist/javadoc/index-files/ java/birchutils/ConfirmBox2/dist/javadoc/index-files/index-1.html java/birchutils/ConfirmBox2/dist/javadoc/index-files/index-2.html java/birchutils/ConfirmBox2/dist/javadoc/resources/ java/birchutils/ConfirmBox2/dist/javadoc/resources/inherit.gif java/birchutils/ConfirmBox2/dist/javadoc/script.js java/birchutils/ConfirmBox2/dist/javadoc/allclasses-frame.html java/birchutils/ConfirmBox2/dist/javadoc/allclasses-noframe.html java/birchutils/ConfirmBox2/dist/javadoc/constant-values.html java/birchutils/ConfirmBox2/dist/javadoc/deprecated-list.html java/birchutils/ConfirmBox2/dist/javadoc/help-doc.html java/birchutils/ConfirmBox2/dist/javadoc/index.html java/birchutils/ConfirmBox2/dist/javadoc/overview-tree.html java/birchutils/ConfirmBox2/dist/javadoc/package-list java/birchutils/ConfirmBox2/dist/javadoc/stylesheet.css java/birchutils/ConfirmBox2/dist/ConfirmBox2.jar java/birchutils/ConfirmBox2/dist/README.TXT java/birchutils/ConfirmBox2/lib/ java/birchutils/ConfirmBox2/lib/CopyLibs/ java/birchutils/ConfirmBox2/lib/CopyLibs/org-netbeans-modules-java-j2seproject-copylibstask.jar java/birchutils/ConfirmBox2/lib/nblibraries.properties java/birchutils/ConfirmBox2/nbproject/ java/birchutils/ConfirmBox2/nbproject/private/ java/birchutils/ConfirmBox2/nbproject/private/config.properties java/birchutils/ConfirmBox2/nbproject/private/private.properties java/birchutils/ConfirmBox2/nbproject/private/private.xml java/birchutils/ConfirmBox2/nbproject/build-impl.xml java/birchutils/ConfirmBox2/nbproject/genfiles.properties java/birchutils/ConfirmBox2/nbproject/project.properties java/birchutils/ConfirmBox2/nbproject/project.xml java/birchutils/ConfirmBox2/src/ java/birchutils/ConfirmBox2/src/confirmbox2/ java/birchutils/ConfirmBox2/src/confirmbox2/ConfirmBox2.java java/birchutils/ConfirmBox2/build.xml java/birchutils/ConfirmBox2/manifest.mf java/birchutils/DirChooser2/ java/birchutils/DirChooser2/dist/ java/birchutils/DirChooser2/dist/README.TXT java/birchutils/DirChooser2/dist/DirChooser2.jar java/birchutils/DirChooser2/lib/ java/birchutils/DirChooser2/lib/CopyLibs/ java/birchutils/DirChooser2/lib/CopyLibs/org-netbeans-modules-java-j2seproject-copylibstask.jar java/birchutils/DirChooser2/lib/nblibraries.properties java/birchutils/DirChooser2/nbproject/ java/birchutils/DirChooser2/nbproject/private/ java/birchutils/DirChooser2/nbproject/private/config.properties java/birchutils/DirChooser2/nbproject/private/private.properties java/birchutils/DirChooser2/nbproject/private/private.xml java/birchutils/DirChooser2/nbproject/build-impl.xml java/birchutils/DirChooser2/nbproject/genfiles.properties java/birchutils/DirChooser2/nbproject/project.properties java/birchutils/DirChooser2/nbproject/project.xml java/birchutils/DirChooser2/src/ java/birchutils/DirChooser2/src/dirchooser2/ java/birchutils/DirChooser2/src/dirchooser2/DirChooser2.java java/birchutils/DirChooser2/build.xml java/birchutils/DirChooser2/manifest.mf java/birchutils/ErrorBox2/ java/birchutils/ErrorBox2/dist/ java/birchutils/ErrorBox2/dist/README.TXT java/birchutils/ErrorBox2/dist/ErrorBox2.jar java/birchutils/ErrorBox2/lib/ java/birchutils/ErrorBox2/lib/CopyLibs/ java/birchutils/ErrorBox2/lib/CopyLibs/org-netbeans-modules-java-j2seproject-copylibstask.jar java/birchutils/ErrorBox2/lib/nblibraries.properties java/birchutils/ErrorBox2/nbproject/ java/birchutils/ErrorBox2/nbproject/private/ java/birchutils/ErrorBox2/nbproject/private/config.properties java/birchutils/ErrorBox2/nbproject/private/private.properties java/birchutils/ErrorBox2/nbproject/private/private.xml java/birchutils/ErrorBox2/nbproject/build-impl.xml java/birchutils/ErrorBox2/nbproject/genfiles.properties java/birchutils/ErrorBox2/nbproject/project.properties java/birchutils/ErrorBox2/nbproject/project.xml java/birchutils/ErrorBox2/src/ java/birchutils/ErrorBox2/src/errorbox2/ java/birchutils/ErrorBox2/src/errorbox2/ErrorBox2.java java/birchutils/ErrorBox2/build.xml java/birchutils/ErrorBox2/manifest.mf java/birchutils/OkayBox2/ java/birchutils/OkayBox2/dist/ java/birchutils/OkayBox2/dist/README.TXT java/birchutils/OkayBox2/dist/OkayBox2.jar java/birchutils/OkayBox2/lib/ java/birchutils/OkayBox2/lib/CopyLibs/ java/birchutils/OkayBox2/lib/CopyLibs/org-netbeans-modules-java-j2seproject-copylibstask.jar java/birchutils/OkayBox2/lib/nblibraries.properties java/birchutils/OkayBox2/nbproject/ java/birchutils/OkayBox2/nbproject/private/ java/birchutils/OkayBox2/nbproject/private/config.properties java/birchutils/OkayBox2/nbproject/private/private.properties java/birchutils/OkayBox2/nbproject/private/private.xml java/birchutils/OkayBox2/nbproject/build-impl.xml java/birchutils/OkayBox2/nbproject/genfiles.properties java/birchutils/OkayBox2/nbproject/project.properties java/birchutils/OkayBox2/nbproject/project.xml java/birchutils/OkayBox2/src/ java/birchutils/OkayBox2/src/okaybox2/ java/birchutils/OkayBox2/src/okaybox2/OkayBox2$1.class java/birchutils/OkayBox2/src/okaybox2/OkayBox2.java java/birchutils/OkayBox2/src/okaybox2/OkayBox2.class java/birchutils/OkayBox2/src/okaybox2/OkayBox2.jar java/birchutils/OkayBox2/build.xml java/birchutils/OkayBox2/manifest.mf java/blrevcomp/ java/blrevcomp/dist/ java/blrevcomp/dist/javadoc/ java/blrevcomp/dist/javadoc/blrevcomp/ java/blrevcomp/dist/javadoc/blrevcomp/class-use/ java/blrevcomp/dist/javadoc/blrevcomp/class-use/BufferedTextInputFile.html java/blrevcomp/dist/javadoc/blrevcomp/class-use/BioSeq.Nuchar.html java/blrevcomp/dist/javadoc/blrevcomp/class-use/BioSeq.html java/blrevcomp/dist/javadoc/blrevcomp/class-use/BufferedTextOutputFile.html java/blrevcomp/dist/javadoc/blrevcomp/class-use/Main.html java/blrevcomp/dist/javadoc/blrevcomp/class-use/Nuchar.html java/blrevcomp/dist/javadoc/blrevcomp/BufferedTextInputFile.html java/blrevcomp/dist/javadoc/blrevcomp/BioSeq.Nuchar.html java/blrevcomp/dist/javadoc/blrevcomp/BioSeq.html java/blrevcomp/dist/javadoc/blrevcomp/BufferedTextOutputFile.html java/blrevcomp/dist/javadoc/blrevcomp/Main.html java/blrevcomp/dist/javadoc/blrevcomp/Nuchar.html java/blrevcomp/dist/javadoc/blrevcomp/package-frame.html java/blrevcomp/dist/javadoc/blrevcomp/package-summary.html java/blrevcomp/dist/javadoc/blrevcomp/package-tree.html java/blrevcomp/dist/javadoc/blrevcomp/package-use.html java/blrevcomp/dist/javadoc/index-files/ java/blrevcomp/dist/javadoc/index-files/index-1.html java/blrevcomp/dist/javadoc/index-files/index-10.html java/blrevcomp/dist/javadoc/index-files/index-11.html java/blrevcomp/dist/javadoc/index-files/index-12.html java/blrevcomp/dist/javadoc/index-files/index-2.html java/blrevcomp/dist/javadoc/index-files/index-3.html java/blrevcomp/dist/javadoc/index-files/index-4.html java/blrevcomp/dist/javadoc/index-files/index-5.html java/blrevcomp/dist/javadoc/index-files/index-6.html java/blrevcomp/dist/javadoc/index-files/index-7.html java/blrevcomp/dist/javadoc/index-files/index-8.html java/blrevcomp/dist/javadoc/index-files/index-9.html java/blrevcomp/dist/javadoc/resources/ java/blrevcomp/dist/javadoc/resources/inherit.gif java/blrevcomp/dist/javadoc/allclasses-frame.html java/blrevcomp/dist/javadoc/allclasses-noframe.html java/blrevcomp/dist/javadoc/constant-values.html java/blrevcomp/dist/javadoc/deprecated-list.html java/blrevcomp/dist/javadoc/help-doc.html java/blrevcomp/dist/javadoc/index.html java/blrevcomp/dist/javadoc/overview-tree.html java/blrevcomp/dist/javadoc/package-list java/blrevcomp/dist/javadoc/stylesheet.css java/blrevcomp/dist/README.TXT java/blrevcomp/dist/blrevcomp.jar java/blrevcomp/dist/blrevcomp.sh java/blrevcomp/nbproject/ java/blrevcomp/nbproject/private/ java/blrevcomp/nbproject/private/private.properties java/blrevcomp/nbproject/private/private.xml java/blrevcomp/nbproject/build-impl.xml java/blrevcomp/nbproject/genfiles.properties java/blrevcomp/nbproject/project.properties java/blrevcomp/nbproject/project.xml java/blrevcomp/src/ java/blrevcomp/src/blrevcomp/ java/blrevcomp/src/blrevcomp/BufferedTextInputFile.java java/blrevcomp/src/blrevcomp/BioSeq.java java/blrevcomp/src/blrevcomp/BufferedTextOutputFile.java java/blrevcomp/src/blrevcomp/Main.java java/blrevcomp/test/ java/blrevcomp/test/DRR206.CDS.fsa java/blrevcomp/test/DRR206.CDS.gde java/blrevcomp/test/DRR206.CDS.opp.fsa java/blrevcomp/test/DRR206.CDS.rev.fsa java/blrevcomp/test/blrevcomp.sh java/blrevcomp/test/test.com java/blrevcomp/build.xml java/blrevcomp/manifest.mf java/jalview-2.11.2.0/ java/jalview-2.11.2.0/.install4j/ java/jalview-2.11.2.0/.install4j/MessagesDefault java/jalview-2.11.2.0/.install4j/build.uuid java/jalview-2.11.2.0/.install4j/i4j_extf_0_n49iio.utf8 java/jalview-2.11.2.0/.install4j/i4j_extf_10_n49iio_18gg8kx.png java/jalview-2.11.2.0/.install4j/i4j_extf_10_n49iio_18gg8kx@2x.png java/jalview-2.11.2.0/.install4j/i4j_extf_10_n49iio_18gg8kx@2x_dark.png java/jalview-2.11.2.0/.install4j/i4j_extf_10_n49iio_18gg8kx_dark.png java/jalview-2.11.2.0/.install4j/i4j_extf_1_n49iio_1vlwtuv.icns java/jalview-2.11.2.0/.install4j/i4j_extf_2_n49iio_u3n2gq.png java/jalview-2.11.2.0/.install4j/i4j_extf_3_n49iio_zuf4m4.ico java/jalview-2.11.2.0/.install4j/i4j_extf_4_n49iio_1cpr98g.icns java/jalview-2.11.2.0/.install4j/i4j_extf_5_n49iio_18syqa5.png java/jalview-2.11.2.0/.install4j/i4j_extf_6_n49iio_182fh27.ico java/jalview-2.11.2.0/.install4j/i4j_extf_7_n49iio_1w645on.ico 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java/jalview-2.11.2.0/release/activation.jarv java/jalview-2.11.2.0/release/miglayout-4.0-swing.jarv java/jalview-2.11.2.0/release/slf4j-api-1.7.32.jarv java/jalview-2.11.2.0/release/jetty-http-9.2.10.v20150310.jarv java/jalview-2.11.2.0/release/jswingreader-0.3.jarv java/jalview-2.11.2.0/release/jsr311-api-1.1.1.jarv java/jalview-2.11.2.0/release/java-json.jarv java/jalview-2.11.2.0/release/jetty-io-9.2.10.v20150310.jarv java/jalview-2.11.2.0/release/getdown-core.jarv java/jalview-2.11.2.0/release/regex.jarv java/jalview-2.11.2.0/release/servlet-api-3.1.jarv java/jalview-2.11.2.0/release/jersey-client-1.19.4.jarv java/jalview-2.11.2.0/release/httpcore-4.0.1.jarv java/jalview-2.11.2.0/release/wsdl4j.jarv java/jalview-2.11.2.0/release/jersey-json-1.19.4.jarv java/jalview-2.11.2.0/release/jabaws-min-client-NO_LOG4J-2.2.0.jarv java/jalview-2.11.2.0/release/httpclient-4.0.3.jarv java/jalview-2.11.2.0/release/xml-apis.jarv java/jalview-2.11.2.0/release/biojava-core-4.1.0.jarv java/jalview-2.11.2.0/release/jetty-util-9.2.10.v20150310.jarv java/jalview-2.11.2.0/release/apache-mime4j-0.6.jarv java/jalview-2.11.2.0/release/log4j-api-2.17.1.jarv java/jalview-2.11.2.0/release/mail.jarv java/jalview-2.11.2.0/release/jsoup-1.8.1.jarv java/jalview-2.11.2.0/release/jetty-server-9.2.10.v20150310.jarv java/jalview-2.11.2.0/release/jersey-core-1.19.4.jarv java/jalview-2.11.2.0/release/jhall.jarv java/jalview-2.11.2.0/release/VARNAv3-93.jarv java/jalview-2.11.2.0/release/quaqua-filechooser-only-8.0.jarv java/jalview-2.11.2.0/release/vamsas-client.jarv java/jalview-2.11.2.0/release/axis.jarv java/jalview-2.11.2.0/release/VAqua5-patch.jarv java/jalview-2.11.2.0/release/xercesImpl.jarv java/jalview-2.11.2.0/release/htsjdk-2.23.0.jarv java/jalview-2.11.2.0/release/log4j-core-2.17.1.jarv java/jalview-2.11.2.0/release/groovy-all-2.4.21-indy.jarv java/jalview-2.11.2.0/release/Jmol-NO_LOG4J-14.31.53.jarv java/jalview-2.11.2.0/release/build_propertiesv java/jalview-2.11.2.0/release/jalview.jarv java/jalview-2.11.2.0/resource/ java/jalview-2.11.2.0/resource/jalview_getdown_background.png java/jalview-2.11.2.0/resource/jalview_getdown_background_error.png java/jalview-2.11.2.0/resource/jalview_getdown_background_initialising.png java/jalview-2.11.2.0/resource/jalview_getdown_progress_bar.png java/jalview-2.11.2.0/resource/jalview_logo.icns java/jalview-2.11.2.0/resource/jalview_logo.png java/jalview-2.11.2.0/resource/jalview_getdown_progress_bar.pngv java/jalview-2.11.2.0/resource/jalview_logo.pngv java/jalview-2.11.2.0/resource/jalview_getdown_background.pngv java/jalview-2.11.2.0/resource/jalview_getdown_background_error.pngv java/jalview-2.11.2.0/resource/jalview_getdown_background_initialising.pngv java/jalview-2.11.2.0/resource/jalview_logo.icnsv java/jalview-2.11.2.0/launcher.log java/jalview-2.11.2.0/proxy.txt java/jalview-2.11.2.0/gettingdown.lock java/jalview-2.11.2.0/channel.propsv java/jalview-2.11.2.0/getdown-launcher-new.jarv java/jalview-2.11.2.0/jalviewg8 java/jalview-2.11.2.0/jalviewg11 java/jalview-2.11.2.0/jalviewg17 java/genographer/ java/genographer/AFLPcore/ java/genographer/AFLPcore/ListNotSearchableError.class java/genographer/AFLPcore/ABI3x00Filter.class java/genographer/AFLPcore/ABIIndexEntry.class java/genographer/AFLPcore/ABILaneFilter.class java/genographer/AFLPcore/AnalysisMgr.class java/genographer/AFLPcore/AnalysisOp.class java/genographer/AFLPcore/Bin.class java/genographer/AFLPcore/BinAnalysis.class java/genographer/AFLPcore/BinOpMgr.class java/genographer/AFLPcore/BinOperation.class java/genographer/AFLPcore/CEQLaneFilter.class java/genographer/AFLPcore/Constants.class java/genographer/AFLPcore/Cutoff.class java/genographer/AFLPcore/Constants.java~ java/genographer/AFLPcore/CutoffFunction.class java/genographer/AFLPcore/CutoffMgr.class java/genographer/AFLPcore/Data.class java/genographer/AFLPcore/DataList.class java/genographer/AFLPcore/FeatureList.class java/genographer/AFLPcore/Gel.class java/genographer/AFLPcore/GelOpMgr.class java/genographer/AFLPcore/GelOperation.class java/genographer/AFLPcore/HighestPeakLocate.class java/genographer/AFLPcore/ImportFilter.class java/genographer/AFLPcore/ImportMgr.class java/genographer/AFLPcore/Lane.class java/genographer/AFLPcore/LaneOpMgr.class java/genographer/AFLPcore/LaneOperation.class java/genographer/AFLPcore/LinearCutoff.class java/genographer/AFLPcore/MissingParameterError.class java/genographer/AFLPcore/LocalSouthern.class java/genographer/AFLPcore/Manager.class java/genographer/AFLPcore/MapMakerAnalysis.class java/genographer/AFLPcore/PrettyInsignificantError.class java/genographer/AFLPcore/NoBrowserException.class java/genographer/AFLPcore/NoDataError.class java/genographer/AFLPcore/NoSize.class java/genographer/AFLPcore/Operation.class java/genographer/AFLPcore/Option.class java/genographer/AFLPcore/PartialSigNorm.class java/genographer/AFLPcore/Option.java~ java/genographer/AFLPcore/Peak.class java/genographer/AFLPcore/PeakLocate.class java/genographer/AFLPcore/PeakMgr.class java/genographer/AFLPcore/ProgOptions.class java/genographer/AFLPcore/RawView.class java/genographer/AFLPcore/SCFFilter.class java/genographer/AFLPcore/ScoreFunction.class java/genographer/AFLPcore/ScoreManager.class java/genographer/AFLPcore/SCFFilter.java~ java/genographer/AFLPcore/ScoringFailure.class java/genographer/AFLPcore/SearchReturn.class java/genographer/AFLPcore/SegregatingScore.class java/genographer/AFLPcore/SignalNorm.class java/genographer/AFLPcore/SizeFunction.class java/genographer/AFLPcore/SizeMgr.class java/genographer/AFLPcore/SizeStandard.class java/genographer/AFLPcore/SortableData.class java/genographer/AFLPcore/StandardMgr.class java/genographer/AFLPcore/TracePeakFinder.class java/genographer/AFLPcore/TracePoint.class java/genographer/AFLPgui/ java/genographer/AFLPgui/AboutDialog.class java/genographer/AFLPgui/AnalysisView.class java/genographer/AFLPgui/Bar.class java/genographer/AFLPgui/BarGraph.class java/genographer/AFLPgui/BinDialog.class java/genographer/AFLPgui/ButtonBar.class java/genographer/AFLPgui/ControlBar.class java/genographer/AFLPgui/CutoffDialog.class java/genographer/AFLPgui/CutoffSlider.class java/genographer/AFLPgui/EntryDialog.class java/genographer/AFLPgui/ErrorDialog.class java/genographer/AFLPgui/FragmentMap.class java/genographer/AFLPgui/GelView.class java/genographer/AFLPgui/Graph.class java/genographer/AFLPgui/GraphView.class java/genographer/AFLPgui/ImgButton.class java/genographer/AFLPgui/MultiFileDialog.class java/genographer/AFLPgui/OptionDialog.class java/genographer/AFLPgui/ScatterGraph.class java/genographer/AFLPgui/TextPrinter.class java/genographer/AFLPgui/Thumbnail.class java/genographer/AFLPgui/TraceView.class java/genographer/com/ java/genographer/com/visualtek/ java/genographer/com/visualtek/png/ java/genographer/com/visualtek/png/PNGTrueColorRowHandler.class java/genographer/com/visualtek/png/PNGColorRowHandler.class java/genographer/com/visualtek/png/PNGData.class java/genographer/com/visualtek/png/PNGDataDecoder.class java/genographer/com/visualtek/png/PNGDataEncoder.class java/genographer/com/visualtek/png/PNGDecoder.class java/genographer/com/visualtek/png/PNGEncoder.class java/genographer/com/visualtek/png/PNGException.class java/genographer/com/visualtek/png/PNGGrayRowHandler.class java/genographer/com/visualtek/png/PNGInfo.class java/genographer/com/visualtek/png/PNGProducer.class java/genographer/com/visualtek/png/PNGRowHandler.class java/genographer/demodata/ java/genographer/demodata/.htaccess java/genographer/demodata/05%a53%2fM-CAC+P-GCT java/genographer/demodata/06%a54%2fM-CAC+P-GCT java/genographer/demodata/07%a55%2fM-CAC+P-GCT java/genographer/demodata/08%a56%2fM-CAC+P-GCT java/genographer/demodata/10%a58%2fM-CAC+P-GCT java/genographer/demodata/11%a59%2fM-CAC+P-GCT java/genographer/demodata/12%a510%2fM-CAC+P-GCT java/genographer/demodata/13%a511%2fM-CAC+P-GCT java/genographer/demodata/14%a512%2fM-CAC+P-GCT java/genographer/demodata/15%a513%2fM-CAC+P-GCT java/genographer/demodata/16%a514%2fM-CAC+P-GCT java/genographer/demodata/17%a515%2fM-CAC+P-GCT java/genographer/demodata/18%a516%2fM-CAC+P-GCT java/genographer/demodata/19%a517%2fM-CAC+P-GCT java/genographer/demodata/20%a518%2fM-CAC+P-GCT java/genographer/demodata/21%a519%2fM-CAC+P-GCT java/genographer/demodata/22%a520%2fM-CAC+P-GCT java/genographer/demodata/23%a521%2fM-CAC+P-GCT java/genographer/demodata/24%a522%2fM-CAC+P-GCT java/genographer/demodata/25%a523%2fM-CAC+P-GCT java/genographer/demodata/26%a524%2fM-CAC+P-GCT java/genographer/demodata/27%a525%2fM-CAC+P-GCT java/genographer/demodata/28%a526%2fM-CAC+P-GCT java/genographer/demodata/29%a527%2fM-CAC+P-GCT java/genographer/demodata/30%a528%2fM-CAC+P-GCT 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java/shuffle/nbproject/private/private.properties java/shuffle/nbproject/private/private.xml java/shuffle/nbproject/build-impl.xml java/shuffle/nbproject/genfiles.properties java/shuffle/nbproject/project.properties java/shuffle/nbproject/project.xml java/shuffle/src/ java/shuffle/src/shuffle/ java/shuffle/src/shuffle/BufferedTextInputFile.java java/shuffle/src/shuffle/BioSeq.java java/shuffle/src/shuffle/BufferedTextOutputFile.java java/shuffle/src/shuffle/Shuffle.java java/shuffle/build.xml java/shuffle/manifest.mf java/archaeopteryx-0.9828/ java/archaeopteryx-0.9828/forester.jar java/archaeopteryx-0.9828/_aptx_configuration_file.txt java/archaeopteryx-0.9828/amphi_frost.xml java/archaeopteryx-0.9828/apaf.xml java/archaeopteryx-0.9828/apaf_with_vector_data.xml java/archaeopteryx-0.9828/forester_1050.jar java/archaeopteryx-0.9828/tol_156.xml java/CorbaTraces.jar java/MWCalculator.jar java/blastviewer/ java/blastviewer/blastviewer.jar java/blastviewer/blastviewer-5.5.1.jar java/blastviewer/blastviewer-5.4.1.jar java/blastviewer/mousecat.blastn.xml java/Mesquite_Folder.3.70/ java/Mesquite_Folder.3.70/._mesquite.sh java/Mesquite_Folder.3.70/mesquite.sh java/Mesquite_Folder.3.70/edu/ java/Mesquite_Folder.3.70/edu/stanford/ java/Mesquite_Folder.3.70/edu/stanford/ejalbert/ java/Mesquite_Folder.3.70/edu/stanford/ejalbert/BrowserLauncher.class java/Mesquite_Folder.3.70/mesquite/ java/Mesquite_Folder.3.70/mesquite/tol/ java/Mesquite_Folder.3.70/mesquite/tol/aTolIntro/ java/Mesquite_Folder.3.70/mesquite/tol/aTolIntro/aTolIntro.class java/Mesquite_Folder.3.70/mesquite/tol/iSpeciesURLServer/ java/Mesquite_Folder.3.70/mesquite/tol/iSpeciesURLServer/iSpeciesURLServer.class java/Mesquite_Folder.3.70/mesquite/tol/SearchToLTaxon/ java/Mesquite_Folder.3.70/mesquite/tol/SearchToLTaxon/32ToL.gif java/Mesquite_Folder.3.70/mesquite/tol/SearchToLTaxon/SearchToLTaxon.class java/Mesquite_Folder.3.70/mesquite/tol/SearchToLTaxon/64ToL.gif java/Mesquite_Folder.3.70/mesquite/tol/SearchToLTaxon/ToL.gif java/Mesquite_Folder.3.70/mesquite/tol/SearchToLTaxon/SearchToLTaxonToolExtra.class java/Mesquite_Folder.3.70/mesquite/tol/GenBankTaxonURLServer/ java/Mesquite_Folder.3.70/mesquite/tol/GenBankTaxonURLServer/GenBankTaxonURLServer.class java/Mesquite_Folder.3.70/mesquite/tol/GetToLTree/ java/Mesquite_Folder.3.70/mesquite/tol/GetToLTree/GetToLTree.class java/Mesquite_Folder.3.70/mesquite/tol/CatalogueOfLifeURLServer/ java/Mesquite_Folder.3.70/mesquite/tol/CatalogueOfLifeURLServer/CatalogueOfLifeURLServer.class java/Mesquite_Folder.3.70/mesquite/tol/lib/ java/Mesquite_Folder.3.70/mesquite/tol/lib/TaxonOnWebServer.class java/Mesquite_Folder.3.70/mesquite/tol/lib/ToLRequestParameters.class java/Mesquite_Folder.3.70/mesquite/tol/lib/BaseSearchToLToolTaxonExtra.class java/Mesquite_Folder.3.70/mesquite/tol/lib/MesquiteXMLToLUtilities.class java/Mesquite_Folder.3.70/mesquite/tol/lib/BaseSearchToLTaxon.class java/Mesquite_Folder.3.70/mesquite/tol/lib/XMLConstants.class java/Mesquite_Folder.3.70/mesquite/tol/lib/ToLUtil.class java/Mesquite_Folder.3.70/mesquite/tol/lib/BaseHttpRequestMaker.class java/Mesquite_Folder.3.70/mesquite/tol/lib/ToLProjectOpener.class java/Mesquite_Folder.3.70/mesquite/tol/TaxonOnWebDB/ java/Mesquite_Folder.3.70/mesquite/tol/TaxonOnWebDB/64TaxonOnWeb.gif java/Mesquite_Folder.3.70/mesquite/tol/TaxonOnWebDB/TaxonOnWebDB.class java/Mesquite_Folder.3.70/mesquite/tol/TaxonOnWebDB/TaxonOnWeb.gif java/Mesquite_Folder.3.70/mesquite/tol/TaxonOnWebDB/32TaxonOnWeb.gif java/Mesquite_Folder.3.70/mesquite/tol/TaxonOnWebDB/TaxonOnWebDBToolExtra.class java/Mesquite_Folder.3.70/mesquite/tol/ToLURLServer/ java/Mesquite_Folder.3.70/mesquite/tol/ToLURLServer/ToLURLServer.class java/Mesquite_Folder.3.70/mesquite/tol/TreeBaseURLServer/ java/Mesquite_Folder.3.70/mesquite/tol/TreeBaseURLServer/TreeBaseURLServer.class java/Mesquite_Folder.3.70/mesquite/tol/uBioURLServer/ java/Mesquite_Folder.3.70/mesquite/tol/uBioURLServer/uBioURLServer.class java/Mesquite_Folder.3.70/mesquite/tol/GoogleURLServer/ java/Mesquite_Folder.3.70/mesquite/tol/GoogleURLServer/GoogleURLServer.class java/Mesquite_Folder.3.70/mesquite/jsci/ java/Mesquite_Folder.3.70/mesquite/jsci/explanation.txt java/Mesquite_Folder.3.70/mesquite/jsci/aJSciIntro/ java/Mesquite_Folder.3.70/mesquite/jsci/aJSciIntro/splash.gif java/Mesquite_Folder.3.70/mesquite/jsci/aJSciIntro/index.html java/Mesquite_Folder.3.70/mesquite/jsci/aJSciIntro/aJSciIntro.class java/Mesquite_Folder.3.70/mesquite/consensus/ java/Mesquite_Folder.3.70/mesquite/consensus/aConsensusIntro/ java/Mesquite_Folder.3.70/mesquite/consensus/aConsensusIntro/aConsensusIntro.class java/Mesquite_Folder.3.70/mesquite/consensus/StrictConsensusTree/ java/Mesquite_Folder.3.70/mesquite/consensus/StrictConsensusTree/StrictConsensusTree.class java/Mesquite_Folder.3.70/mesquite/consensus/Notes/ java/Mesquite_Folder.3.70/mesquite/consensus/Notes/Consensus Notes java/Mesquite_Folder.3.70/mesquite/consensus/Notes/Examples/ java/Mesquite_Folder.3.70/mesquite/consensus/Notes/Examples/BembidionWithTrees java/Mesquite_Folder.3.70/mesquite/consensus/ConsensusTree/ java/Mesquite_Folder.3.70/mesquite/consensus/ConsensusTree/TSourceWrapper.class java/Mesquite_Folder.3.70/mesquite/consensus/ConsensusTree/ConsensusTree.class java/Mesquite_Folder.3.70/mesquite/consensus/ConsensusTree/ConsCompatibilityTest.class java/Mesquite_Folder.3.70/mesquite/consensus/lib/ java/Mesquite_Folder.3.70/mesquite/consensus/lib/BipartitionVector.class java/Mesquite_Folder.3.70/mesquite/consensus/lib/Bipartition.class java/Mesquite_Folder.3.70/mesquite/consensus/lib/StrictConsenser.class java/Mesquite_Folder.3.70/mesquite/consensus/lib/BasicTreeConsenser.class java/Mesquite_Folder.3.70/mesquite/consensus/MajRuleTree/ java/Mesquite_Folder.3.70/mesquite/consensus/MajRuleTree/MajRuleTree.class java/Mesquite_Folder.3.70/mesquite/consensus/SemistrictConsensusTree/ java/Mesquite_Folder.3.70/mesquite/consensus/SemistrictConsensusTree/SemistrictConsensusTree.class java/Mesquite_Folder.3.70/mesquite/stochchar/ java/Mesquite_Folder.3.70/mesquite/stochchar/ManageProbModelSets/ java/Mesquite_Folder.3.70/mesquite/stochchar/ManageProbModelSets/ModelsetNexusCommandTest.class java/Mesquite_Folder.3.70/mesquite/stochchar/ManageProbModelSets/ManageProbModelSets.class java/Mesquite_Folder.3.70/mesquite/stochchar/CurrentProbModels/ java/Mesquite_Folder.3.70/mesquite/stochchar/CurrentProbModels/CurrentProbModels.class java/Mesquite_Folder.3.70/mesquite/stochchar/StochCharMapper/ java/Mesquite_Folder.3.70/mesquite/stochchar/StochCharMapper/StochCharMapper.class java/Mesquite_Folder.3.70/mesquite/stochchar/AsymmMkExplorer/ java/Mesquite_Folder.3.70/mesquite/stochchar/AsymmMkExplorer/AsymmMkExplorer.class java/Mesquite_Folder.3.70/mesquite/stochchar/SimCharsOnTrees/ java/Mesquite_Folder.3.70/mesquite/stochchar/SimCharsOnTrees/SCCompatibilityTest.class java/Mesquite_Folder.3.70/mesquite/stochchar/SimCharsOnTrees/SimCharsOnTrees.class java/Mesquite_Folder.3.70/mesquite/stochchar/InterpretPagelFormatM/ java/Mesquite_Folder.3.70/mesquite/stochchar/InterpretPagelFormatM/InterpretPagelFormatM.class java/Mesquite_Folder.3.70/mesquite/stochchar/MkModelCurator/ java/Mesquite_Folder.3.70/mesquite/stochchar/MkModelCurator/MkModelCurator.class java/Mesquite_Folder.3.70/mesquite/stochchar/GainLossRates/ java/Mesquite_Folder.3.70/mesquite/stochchar/GainLossRates/GainLossRates.class java/Mesquite_Folder.3.70/mesquite/stochchar/EvolveCategChars/ java/Mesquite_Folder.3.70/mesquite/stochchar/EvolveCategChars/EvolveCategChars.class java/Mesquite_Folder.3.70/mesquite/stochchar/EvolveCategChars/ECCCategoricalStateTest.class java/Mesquite_Folder.3.70/mesquite/stochchar/explanation.txt java/Mesquite_Folder.3.70/mesquite/stochchar/SimulatedMatrix/ java/Mesquite_Folder.3.70/mesquite/stochchar/SimulatedMatrix/SimulatedMatrix.class java/Mesquite_Folder.3.70/mesquite/stochchar/SimulatedMatrix/SMCompatibilityTest.class java/Mesquite_Folder.3.70/mesquite/stochchar/EvolveContinuous/ java/Mesquite_Folder.3.70/mesquite/stochchar/EvolveContinuous/EvolveContinuous.class java/Mesquite_Folder.3.70/mesquite/stochchar/EvolveContinuous/ECoCCategoricalStateTest.class java/Mesquite_Folder.3.70/mesquite/stochchar/Mk1Rate/ java/Mesquite_Folder.3.70/mesquite/stochchar/Mk1Rate/Mk1Rate.class java/Mesquite_Folder.3.70/mesquite/stochchar/LikelihoodInCharacter/ java/Mesquite_Folder.3.70/mesquite/stochchar/LikelihoodInCharacter/LikelihoodInCharacter.class java/Mesquite_Folder.3.70/mesquite/stochchar/SimAncestralStates/ java/Mesquite_Folder.3.70/mesquite/stochchar/SimAncestralStates/SimAncestralStates.class java/Mesquite_Folder.3.70/mesquite/stochchar/ProbModelSetList/ java/Mesquite_Folder.3.70/mesquite/stochchar/ProbModelSetList/ProbModelSetList.class java/Mesquite_Folder.3.70/mesquite/stochchar/aStochCharIntro/ java/Mesquite_Folder.3.70/mesquite/stochchar/aStochCharIntro/aStochCharIntro.class java/Mesquite_Folder.3.70/mesquite/stochchar/StoredProbModelSim/ java/Mesquite_Folder.3.70/mesquite/stochchar/StoredProbModelSim/StoredProbModelSim.class java/Mesquite_Folder.3.70/mesquite/stochchar/SimulatedCharacters/ java/Mesquite_Folder.3.70/mesquite/stochchar/SimulatedCharacters/SCCompatibilityTest.class java/Mesquite_Folder.3.70/mesquite/stochchar/SimulatedCharacters/SimulatedCharacters.class java/Mesquite_Folder.3.70/mesquite/stochchar/InterpretPagelFormat/ java/Mesquite_Folder.3.70/mesquite/stochchar/InterpretPagelFormat/InterpretPagelFormat.class java/Mesquite_Folder.3.70/mesquite/stochchar/SimMatricesOnTrees/ java/Mesquite_Folder.3.70/mesquite/stochchar/SimMatricesOnTrees/SMoSTCompatibilityTest.class java/Mesquite_Folder.3.70/mesquite/stochchar/SimMatricesOnTrees/SimMatricesOnTrees.class java/Mesquite_Folder.3.70/mesquite/stochchar/ManageCharModelsBlock/ java/Mesquite_Folder.3.70/mesquite/stochchar/ManageCharModelsBlock/ProbCharModelsBlock.class java/Mesquite_Folder.3.70/mesquite/stochchar/ManageCharModelsBlock/ManageCharModelsBlock.class java/Mesquite_Folder.3.70/mesquite/stochchar/ManageCharModelsBlock/ProbCharModelsBlockTest.class java/Mesquite_Folder.3.70/mesquite/stochchar/zMargLikeCateg/ java/Mesquite_Folder.3.70/mesquite/stochchar/zMargLikeCateg/zMargLikeCateg.class java/Mesquite_Folder.3.70/mesquite/stochchar/lib/ java/Mesquite_Folder.3.70/mesquite/stochchar/lib/JointLikeAncStForModel.class java/Mesquite_Folder.3.70/mesquite/stochchar/lib/MargLikelihoodForModel.class java/Mesquite_Folder.3.70/mesquite/stochchar/lib/CharacterLikelihood.class java/Mesquite_Folder.3.70/mesquite/stochchar/lib/AsymmModel.class java/Mesquite_Folder.3.70/mesquite/stochchar/lib/MkModel.class java/Mesquite_Folder.3.70/mesquite/stochchar/lib/ProbModelSourceLike.class java/Mesquite_Folder.3.70/mesquite/stochchar/lib/MargLikeAncStForModel.class java/Mesquite_Folder.3.70/mesquite/stochchar/lib/ProbModelSource.class java/Mesquite_Folder.3.70/mesquite/stochchar/lib/ProbabilityCategCharModel.class java/Mesquite_Folder.3.70/mesquite/stochchar/lib/MargLikeAncStCLForModel.class java/Mesquite_Folder.3.70/mesquite/stochchar/lib/ProbabilityContCharModel.class java/Mesquite_Folder.3.70/mesquite/stochchar/lib/ProbPhenCategCharModel.class java/Mesquite_Folder.3.70/mesquite/stochchar/lib/SimModelCompatInfo.class java/Mesquite_Folder.3.70/mesquite/stochchar/lib/PagelFormatI.class java/Mesquite_Folder.3.70/mesquite/stochchar/lib/ProbModelSourceSim.class java/Mesquite_Folder.3.70/mesquite/stochchar/lib/BrownianMotionModel.class java/Mesquite_Folder.3.70/mesquite/stochchar/lib/CategProbModelCurator.class java/Mesquite_Folder.3.70/mesquite/stochchar/lib/TreeDataModelBundle.class java/Mesquite_Folder.3.70/mesquite/stochchar/lib/PagNodeRecord.class java/Mesquite_Folder.3.70/mesquite/stochchar/CharLikelihood/ java/Mesquite_Folder.3.70/mesquite/stochchar/CharLikelihood/CharLikelihood.class java/Mesquite_Folder.3.70/mesquite/stochchar/CharListProbModels/ java/Mesquite_Folder.3.70/mesquite/stochchar/CharListProbModels/CharListProbModels.class java/Mesquite_Folder.3.70/mesquite/stochchar/CurrentProbModelsSim/ java/Mesquite_Folder.3.70/mesquite/stochchar/CurrentProbModelsSim/CurrentProbModelsSim.class java/Mesquite_Folder.3.70/mesquite/stochchar/StoredProbModel/ java/Mesquite_Folder.3.70/mesquite/stochchar/StoredProbModel/StoredProbModel.class java/Mesquite_Folder.3.70/mesquite/stochchar/StoredProbModel/LikeModelCompatInfo.class java/Mesquite_Folder.3.70/mesquite/stochchar/Brownian/ java/Mesquite_Folder.3.70/mesquite/stochchar/Brownian/Brownian.class java/Mesquite_Folder.3.70/mesquite/stochchar/MargProbAncStates/ java/Mesquite_Folder.3.70/mesquite/stochchar/MargProbAncStates/MargProbAncStates.class java/Mesquite_Folder.3.70/mesquite/stochchar/AsymmModelCurator/ java/Mesquite_Folder.3.70/mesquite/stochchar/AsymmModelCurator/AsymmModelCurator.class java/Mesquite_Folder.3.70/mesquite/stochchar/AsymmModelCurator/AsymmModelEditor.class java/Mesquite_Folder.3.70/mesquite/stochchar/AsymmetryLR/ java/Mesquite_Folder.3.70/mesquite/stochchar/AsymmetryLR/AsymmetryLR.class java/Mesquite_Folder.3.70/mesquite/trees/ java/Mesquite_Folder.3.70/mesquite/trees/ValuesAtNodes/ java/Mesquite_Folder.3.70/mesquite/trees/ValuesAtNodes/ValuesAtNodes.class java/Mesquite_Folder.3.70/mesquite/trees/ValuesAtNodes/ParamString.class java/Mesquite_Folder.3.70/mesquite/trees/ValuesAtNodes/ValuesAtNodesOperator.class java/Mesquite_Folder.3.70/mesquite/trees/ColorTaxonByAssigned/ java/Mesquite_Folder.3.70/mesquite/trees/ColorTaxonByAssigned/ColorTaxonByAssigned.class java/Mesquite_Folder.3.70/mesquite/trees/DefaultTrees/ java/Mesquite_Folder.3.70/mesquite/trees/DefaultTrees/DefaultTrees.class java/Mesquite_Folder.3.70/mesquite/trees/NumForNodesWithChar/ java/Mesquite_Folder.3.70/mesquite/trees/NumForNodesWithChar/NumForNodesWithChar.class java/Mesquite_Folder.3.70/mesquite/trees/BranchLengthsAdjust/ java/Mesquite_Folder.3.70/mesquite/trees/BranchLengthsAdjust/BranchLengthsAdjust.class java/Mesquite_Folder.3.70/mesquite/trees/BranchLengthsAdjust/64adjustLengths.gif java/Mesquite_Folder.3.70/mesquite/trees/BranchLengthsAdjust/adjustLengths.gif java/Mesquite_Folder.3.70/mesquite/trees/BranchLengthsAdjust/32dragLengths.gif java/Mesquite_Folder.3.70/mesquite/trees/BranchLengthsAdjust/32adjustLengths.gif java/Mesquite_Folder.3.70/mesquite/trees/BranchLengthsAdjust/64dragLengths.gif java/Mesquite_Folder.3.70/mesquite/trees/BranchLengthsAdjust/dragLengths.gif java/Mesquite_Folder.3.70/mesquite/trees/BranchLengthsAdjust/AdjustToolExtra.class java/Mesquite_Folder.3.70/mesquite/trees/NoColorForTaxon/ java/Mesquite_Folder.3.70/mesquite/trees/NoColorForTaxon/NoColorForTaxon.class java/Mesquite_Folder.3.70/mesquite/trees/SquareLineTree/ java/Mesquite_Folder.3.70/mesquite/trees/SquareLineTree/SquareLineTree.class java/Mesquite_Folder.3.70/mesquite/trees/SquareLineTree/SquareLineTreeDrawing.class java/Mesquite_Folder.3.70/mesquite/trees/SearchTreeToolAssistant/ java/Mesquite_Folder.3.70/mesquite/trees/SearchTreeToolAssistant/searchTree.gif java/Mesquite_Folder.3.70/mesquite/trees/SearchTreeToolAssistant/32searchTree.gif java/Mesquite_Folder.3.70/mesquite/trees/SearchTreeToolAssistant/SearchTreeToolExtra.class java/Mesquite_Folder.3.70/mesquite/trees/SearchTreeToolAssistant/SearchTreeToolAssistant.class java/Mesquite_Folder.3.70/mesquite/trees/SearchTreeToolAssistant/64searchTree.gif java/Mesquite_Folder.3.70/mesquite/trees/ResolvePolytomiesToZero/ java/Mesquite_Folder.3.70/mesquite/trees/ResolvePolytomiesToZero/ResolvePolytomiesToZero.class java/Mesquite_Folder.3.70/mesquite/trees/TreeOfContext/ java/Mesquite_Folder.3.70/mesquite/trees/TreeOfContext/TreeOfContext.class java/Mesquite_Folder.3.70/mesquite/trees/ShowTreeInList/ java/Mesquite_Folder.3.70/mesquite/trees/ShowTreeInList/ShowTreeInList.class java/Mesquite_Folder.3.70/mesquite/trees/ShowTreeInList/64showTree.gif java/Mesquite_Folder.3.70/mesquite/trees/ShowTreeInList/showTree.gif java/Mesquite_Folder.3.70/mesquite/trees/ShowTreeInList/32showTree.gif java/Mesquite_Folder.3.70/mesquite/trees/SetBranchLengths/ java/Mesquite_Folder.3.70/mesquite/trees/SetBranchLengths/SetBranchLengths.class java/Mesquite_Folder.3.70/mesquite/trees/DefiniteTreeSource/ java/Mesquite_Folder.3.70/mesquite/trees/DefiniteTreeSource/DefiniteTreeSource.class java/Mesquite_Folder.3.70/mesquite/trees/TerminalBranchLength/ java/Mesquite_Folder.3.70/mesquite/trees/TerminalBranchLength/TerminalBranchLength.class java/Mesquite_Folder.3.70/mesquite/trees/TreeInfoValues/ java/Mesquite_Folder.3.70/mesquite/trees/TreeInfoValues/ValuesPanel.class java/Mesquite_Folder.3.70/mesquite/trees/TreeInfoValues/TreeInfoValues.class java/Mesquite_Folder.3.70/mesquite/trees/AlterLengths/ java/Mesquite_Folder.3.70/mesquite/trees/AlterLengths/AlterLengths.class java/Mesquite_Folder.3.70/mesquite/trees/SetAssumptionSoft/ java/Mesquite_Folder.3.70/mesquite/trees/SetAssumptionSoft/SetAssumptionSoft.class java/Mesquite_Folder.3.70/mesquite/trees/NodeNamer/ java/Mesquite_Folder.3.70/mesquite/trees/NodeNamer/nodeNamer.gif java/Mesquite_Folder.3.70/mesquite/trees/NodeNamer/NodeNamerExtra.class java/Mesquite_Folder.3.70/mesquite/trees/NodeNamer/32nodeNamer.gif java/Mesquite_Folder.3.70/mesquite/trees/NodeNamer/NodeNamer.class java/Mesquite_Folder.3.70/mesquite/trees/NodeNamer/64nodeNamer.gif java/Mesquite_Folder.3.70/mesquite/trees/NodeLocsStandard/ java/Mesquite_Folder.3.70/mesquite/trees/NodeLocsStandard/64expand.gif java/Mesquite_Folder.3.70/mesquite/trees/NodeLocsStandard/32expand.gif java/Mesquite_Folder.3.70/mesquite/trees/NodeLocsStandard/expand.gif java/Mesquite_Folder.3.70/mesquite/trees/NodeLocsStandard/NodeLocsStandard.class java/Mesquite_Folder.3.70/mesquite/trees/NodeLocsStandard/NodeLocsExtra.class java/Mesquite_Folder.3.70/mesquite/trees/AverageTreeValue/ java/Mesquite_Folder.3.70/mesquite/trees/AverageTreeValue/AverageTreeValue.class java/Mesquite_Folder.3.70/mesquite/trees/NumForCharCurrentTree/ java/Mesquite_Folder.3.70/mesquite/trees/NumForCharCurrentTree/NumForCharCurrentTree.class java/Mesquite_Folder.3.70/mesquite/trees/CollapseZeroToPolys/ java/Mesquite_Folder.3.70/mesquite/trees/CollapseZeroToPolys/CollapseZeroToPolys.class java/Mesquite_Folder.3.70/mesquite/trees/DeassignBranchLengths/ java/Mesquite_Folder.3.70/mesquite/trees/DeassignBranchLengths/DeassignBranchLengths.class java/Mesquite_Folder.3.70/mesquite/trees/NumForNodesAttached/ java/Mesquite_Folder.3.70/mesquite/trees/NumForNodesAttached/NumForNodesAttached.class java/Mesquite_Folder.3.70/mesquite/trees/ScaleSelBranchLengths/ java/Mesquite_Folder.3.70/mesquite/trees/ScaleSelBranchLengths/ScaleSelBranchLengths.class java/Mesquite_Folder.3.70/mesquite/trees/ColorBranches/ java/Mesquite_Folder.3.70/mesquite/trees/ColorBranches/color.gif java/Mesquite_Folder.3.70/mesquite/trees/ColorBranches/ColorBranches.class java/Mesquite_Folder.3.70/mesquite/trees/ColorBranches/ColorToolExtra.class java/Mesquite_Folder.3.70/mesquite/trees/ColorBranches/64color.gif java/Mesquite_Folder.3.70/mesquite/trees/ColorBranches/32color.gif java/Mesquite_Folder.3.70/mesquite/trees/NumForNodesWithMat/ java/Mesquite_Folder.3.70/mesquite/trees/NumForNodesWithMat/NumForNodesWithMat.class java/Mesquite_Folder.3.70/mesquite/trees/UtilityCoordinator/ java/Mesquite_Folder.3.70/mesquite/trees/UtilityCoordinator/UtilityCoordinator.class java/Mesquite_Folder.3.70/mesquite/trees/NumForTreeCladeValue/ java/Mesquite_Folder.3.70/mesquite/trees/NumForTreeCladeValue/NumForTreeCladeValue.class java/Mesquite_Folder.3.70/mesquite/trees/OtherTreeBlocks/ java/Mesquite_Folder.3.70/mesquite/trees/OtherTreeBlocks/OtherTreeBlocks.class java/Mesquite_Folder.3.70/mesquite/trees/AddTaxaToTree/ java/Mesquite_Folder.3.70/mesquite/trees/AddTaxaToTree/AddTaxaToTree.class java/Mesquite_Folder.3.70/mesquite/trees/BranchInfo/ java/Mesquite_Folder.3.70/mesquite/trees/BranchInfo/branchInfo.gif java/Mesquite_Folder.3.70/mesquite/trees/BranchInfo/32branchInfo.gif java/Mesquite_Folder.3.70/mesquite/trees/BranchInfo/BranchInfo.class java/Mesquite_Folder.3.70/mesquite/trees/BranchInfo/InfoToolExtra.class java/Mesquite_Folder.3.70/mesquite/trees/BranchInfo/64branchInfo.gif java/Mesquite_Folder.3.70/mesquite/trees/DependentTreeWindow/ java/Mesquite_Folder.3.70/mesquite/trees/DependentTreeWindow/DependentTreeWindow.class java/Mesquite_Folder.3.70/mesquite/trees/DependentTreeWindow/DepMessagePanel.class java/Mesquite_Folder.3.70/mesquite/trees/DependentTreeWindow/DepTreeWindow.class java/Mesquite_Folder.3.70/mesquite/trees/DependentTreeWindow/DepTreeExtra.class java/Mesquite_Folder.3.70/mesquite/trees/DiagonalDrawTree/ java/Mesquite_Folder.3.70/mesquite/trees/DiagonalDrawTree/DiagonalDrawTree.class java/Mesquite_Folder.3.70/mesquite/trees/DiagonalDrawTree/DiagonalTreeDrawing.class java/Mesquite_Folder.3.70/mesquite/trees/SetToLadderized/ java/Mesquite_Folder.3.70/mesquite/trees/SetToLadderized/SetToLadderized.class java/Mesquite_Folder.3.70/mesquite/trees/AllBranchLengthsOne/ java/Mesquite_Folder.3.70/mesquite/trees/AllBranchLengthsOne/AllBranchLengthsOne.class java/Mesquite_Folder.3.70/mesquite/trees/TreeLegendMaker/ java/Mesquite_Folder.3.70/mesquite/trees/TreeLegendMaker/TreeLegendMaker.class java/Mesquite_Folder.3.70/mesquite/trees/TreeLegendMaker/TreeLegend.class java/Mesquite_Folder.3.70/mesquite/trees/TreeLegendMaker/TreeLegendOperator.class java/Mesquite_Folder.3.70/mesquite/trees/NumberOfTaxa/ java/Mesquite_Folder.3.70/mesquite/trees/NumberOfTaxa/NumberOfTaxa.class java/Mesquite_Folder.3.70/mesquite/trees/BLFromNodeAgeConstraints/ java/Mesquite_Folder.3.70/mesquite/trees/BLFromNodeAgeConstraints/BLFromNodeAgeConstraints.class java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeDrawCoordinator/ java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeDrawCoordinator/BasicTreeDrawCoordinator.class java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeDrawCoordinator/BasicTreeDisplay.class java/Mesquite_Folder.3.70/mesquite/trees/explanation.txt java/Mesquite_Folder.3.70/mesquite/trees/ListedTreeBlocks/ java/Mesquite_Folder.3.70/mesquite/trees/ListedTreeBlocks/ListedTreeBlocks.class java/Mesquite_Folder.3.70/mesquite/trees/SimulateTree/ java/Mesquite_Folder.3.70/mesquite/trees/SimulateTree/SimulateTree.class java/Mesquite_Folder.3.70/mesquite/trees/ShadeNumbersOnTree/ java/Mesquite_Folder.3.70/mesquite/trees/ShadeNumbersOnTree/ShadeNumbersDecorator.class java/Mesquite_Folder.3.70/mesquite/trees/ShadeNumbersOnTree/ShadeNumbersOnTree.class java/Mesquite_Folder.3.70/mesquite/trees/NumForNodesWithCharHist/ java/Mesquite_Folder.3.70/mesquite/trees/NumForNodesWithCharHist/NumForNodesWithCharHist.class java/Mesquite_Folder.3.70/mesquite/trees/MirrorTreeWindowMaker/ java/Mesquite_Folder.3.70/mesquite/trees/MirrorTreeWindowMaker/MirrorTreeWindowMaker.class java/Mesquite_Folder.3.70/mesquite/trees/MirrorTreeWindowMaker/MirrorTreeWindow.class java/Mesquite_Folder.3.70/mesquite/trees/MirrorTreeWindowMaker/MirrorExtra.class java/Mesquite_Folder.3.70/mesquite/trees/SelectTaxaInClade/ java/Mesquite_Folder.3.70/mesquite/trees/SelectTaxaInClade/selectTaxaInClade.gif java/Mesquite_Folder.3.70/mesquite/trees/SelectTaxaInClade/64selectTaxa.gif java/Mesquite_Folder.3.70/mesquite/trees/SelectTaxaInClade/SelectTaxaInClade.class java/Mesquite_Folder.3.70/mesquite/trees/SelectTaxaInClade/SelectTaxaToolExtra.class java/Mesquite_Folder.3.70/mesquite/trees/SelectTaxaInClade/32selectTaxa.gif java/Mesquite_Folder.3.70/mesquite/trees/SelectTaxaInClade/32selectTaxaInClade.gif java/Mesquite_Folder.3.70/mesquite/trees/SelectTaxaInClade/selectTaxa.gif java/Mesquite_Folder.3.70/mesquite/trees/SelectTaxaInClade/64selectTaxaInClade.gif java/Mesquite_Folder.3.70/mesquite/trees/ManageTrees/ java/Mesquite_Folder.3.70/mesquite/trees/ManageTrees/DirectTreeFileThread.class java/Mesquite_Folder.3.70/mesquite/trees/ManageTrees/TreeBlockTest.class java/Mesquite_Folder.3.70/mesquite/trees/ManageTrees/FillerThread.class java/Mesquite_Folder.3.70/mesquite/trees/ManageTrees/TreeBlockMonitorThread.class java/Mesquite_Folder.3.70/mesquite/trees/ManageTrees/TreeBlockThread.class java/Mesquite_Folder.3.70/mesquite/trees/ManageTrees/TreeBlock.class java/Mesquite_Folder.3.70/mesquite/trees/ManageTrees/ManageTrees.class java/Mesquite_Folder.3.70/mesquite/trees/TreeValueUsingMatrix/ java/Mesquite_Folder.3.70/mesquite/trees/TreeValueUsingMatrix/TreeValueUsingMatrix.class java/Mesquite_Folder.3.70/mesquite/trees/SelectBranches/ java/Mesquite_Folder.3.70/mesquite/trees/SelectBranches/select.gif java/Mesquite_Folder.3.70/mesquite/trees/SelectBranches/32selectClade.gif java/Mesquite_Folder.3.70/mesquite/trees/SelectBranches/SelectBranches.class java/Mesquite_Folder.3.70/mesquite/trees/SelectBranches/64selectClade.gif java/Mesquite_Folder.3.70/mesquite/trees/SelectBranches/SelectToolExtra.class java/Mesquite_Folder.3.70/mesquite/trees/SelectBranches/selectClade.gif java/Mesquite_Folder.3.70/mesquite/trees/SelectBranches/64select.gif java/Mesquite_Folder.3.70/mesquite/trees/SelectBranches/32select.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowCoord/ java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowCoord/BasicTreeWindowCoord.class java/Mesquite_Folder.3.70/mesquite/trees/SetToUnrooted/ java/Mesquite_Folder.3.70/mesquite/trees/SetToUnrooted/SetToUnrooted.class java/Mesquite_Folder.3.70/mesquite/trees/SetBranchLengthsIfLessThan/ java/Mesquite_Folder.3.70/mesquite/trees/SetBranchLengthsIfLessThan/SetBranchLengthsIfLessThan.class java/Mesquite_Folder.3.70/mesquite/trees/NumForCharOnTree/ java/Mesquite_Folder.3.70/mesquite/trees/NumForCharOnTree/NumForCharOnTree.class java/Mesquite_Folder.3.70/mesquite/trees/LabelBranchLengths/ java/Mesquite_Folder.3.70/mesquite/trees/LabelBranchLengths/LabelBranchLengths.class java/Mesquite_Folder.3.70/mesquite/trees/LabelBranchLengths/BranchLengthsLabeler.class java/Mesquite_Folder.3.70/mesquite/trees/LabelBranchLengths/HandlesAtNodes.class java/Mesquite_Folder.3.70/mesquite/trees/LabelBranchLengths/HandlePanel.class java/Mesquite_Folder.3.70/mesquite/trees/SetToRooted/ java/Mesquite_Folder.3.70/mesquite/trees/SetToRooted/SetToRooted.class java/Mesquite_Folder.3.70/mesquite/trees/ArcTree/ java/Mesquite_Folder.3.70/mesquite/trees/ArcTree/ArcTreeDrawing.class java/Mesquite_Folder.3.70/mesquite/trees/ArcTree/ArcTree.class java/Mesquite_Folder.3.70/mesquite/trees/NumFor2CharCurrentTree/ java/Mesquite_Folder.3.70/mesquite/trees/NumFor2CharCurrentTree/NumFor2CharCurrentTree.class java/Mesquite_Folder.3.70/mesquite/trees/TreeNotesMaker/ java/Mesquite_Folder.3.70/mesquite/trees/TreeNotesMaker/TreeNotesMaker.class java/Mesquite_Folder.3.70/mesquite/trees/TreeNotesMaker/TreeNotesOperator.class java/Mesquite_Folder.3.70/mesquite/trees/TreeNotesMaker/TreeNote.class java/Mesquite_Folder.3.70/mesquite/trees/ClearBranchNames/ java/Mesquite_Folder.3.70/mesquite/trees/ClearBranchNames/ClearBranchNames.class java/Mesquite_Folder.3.70/mesquite/trees/SetSelBranchLengths/ java/Mesquite_Folder.3.70/mesquite/trees/SetSelBranchLengths/SetSelBranchLengths.class java/Mesquite_Folder.3.70/mesquite/trees/BasicDrawTaxonNames/ java/Mesquite_Folder.3.70/mesquite/trees/BasicDrawTaxonNames/BasicDrawTaxonNames.class java/Mesquite_Folder.3.70/mesquite/trees/SimulatedTreeBlocks/ java/Mesquite_Folder.3.70/mesquite/trees/SimulatedTreeBlocks/SimulatedTreeBlocks.class java/Mesquite_Folder.3.70/mesquite/trees/BranchLengthFromRoot/ java/Mesquite_Folder.3.70/mesquite/trees/BranchLengthFromRoot/BranchLengthFromRoot.class java/Mesquite_Folder.3.70/mesquite/trees/SampleManyTreesFromFile/ java/Mesquite_Folder.3.70/mesquite/trees/SampleManyTreesFromFile/SampleManyTreesFromFile.class java/Mesquite_Folder.3.70/mesquite/trees/BallsNSticks/ java/Mesquite_Folder.3.70/mesquite/trees/BallsNSticks/BallsNSticks.class java/Mesquite_Folder.3.70/mesquite/trees/BallsNSticks/BallsNSticksDrawing.class java/Mesquite_Folder.3.70/mesquite/trees/aTreesIntro/ java/Mesquite_Folder.3.70/mesquite/trees/aTreesIntro/aTreesIntro.class java/Mesquite_Folder.3.70/mesquite/trees/NumForTreeSelNodeValue/ java/Mesquite_Folder.3.70/mesquite/trees/NumForTreeSelNodeValue/NumForTreeSelNodeValue.class java/Mesquite_Folder.3.70/mesquite/trees/DifferenceInNumsForTree/ java/Mesquite_Folder.3.70/mesquite/trees/DifferenceInNumsForTree/DifferenceInNumsForTree.class java/Mesquite_Folder.3.70/mesquite/trees/NumForMatCurrentTree/ java/Mesquite_Folder.3.70/mesquite/trees/NumForMatCurrentTree/NumForMatCurrentTree.class java/Mesquite_Folder.3.70/mesquite/trees/NumForTreeWith2Chars/ java/Mesquite_Folder.3.70/mesquite/trees/NumForTreeWith2Chars/NumForTreeWith2Chars.class java/Mesquite_Folder.3.70/mesquite/trees/StoredTrees/ java/Mesquite_Folder.3.70/mesquite/trees/StoredTrees/StoredTrees.class java/Mesquite_Folder.3.70/mesquite/trees/StoredTrees/STCompatibilityTest.class java/Mesquite_Folder.3.70/mesquite/trees/ColorTaxonByPartition/ java/Mesquite_Folder.3.70/mesquite/trees/ColorTaxonByPartition/ColorTaxonByPartition.class java/Mesquite_Folder.3.70/mesquite/trees/SetAssumptionDefault/ java/Mesquite_Folder.3.70/mesquite/trees/SetAssumptionDefault/SetAssumptionDefault.class java/Mesquite_Folder.3.70/mesquite/trees/NumsForNodesBrLengths/ java/Mesquite_Folder.3.70/mesquite/trees/NumsForNodesBrLengths/NumsForNodesBrLengths.class java/Mesquite_Folder.3.70/mesquite/trees/EquiprobableTrees/ java/Mesquite_Folder.3.70/mesquite/trees/EquiprobableTrees/EquiprobableTrees.class java/Mesquite_Folder.3.70/mesquite/trees/lib/ java/Mesquite_Folder.3.70/mesquite/trees/lib/TreeInfoExtraPanel.class java/Mesquite_Folder.3.70/mesquite/trees/lib/SimpleTreeWindow.class java/Mesquite_Folder.3.70/mesquite/trees/lib/SMessagePanel.class java/Mesquite_Folder.3.70/mesquite/trees/lib/DrawTreeUtil.class java/Mesquite_Folder.3.70/mesquite/trees/lib/SimpleTreeWindowMaker.class java/Mesquite_Folder.3.70/mesquite/trees/lib/TaxonPolygon.class java/Mesquite_Folder.3.70/mesquite/trees/lib/TreeOptimizer.class java/Mesquite_Folder.3.70/mesquite/trees/lib/ManyTreesFromFileLib.class java/Mesquite_Folder.3.70/mesquite/trees/lib/FIleCheckThread.class java/Mesquite_Folder.3.70/mesquite/trees/BooleanTreeValue/ java/Mesquite_Folder.3.70/mesquite/trees/BooleanTreeValue/BooleanTreeValue.class java/Mesquite_Folder.3.70/mesquite/trees/SquareTree/ java/Mesquite_Folder.3.70/mesquite/trees/SquareTree/SquareTree.class java/Mesquite_Folder.3.70/mesquite/trees/SquareTree/SquareTreeDrawing.class java/Mesquite_Folder.3.70/mesquite/trees/NumForTreeWithChar/ java/Mesquite_Folder.3.70/mesquite/trees/NumForTreeWithChar/NumForTreeWithChar.class java/Mesquite_Folder.3.70/mesquite/trees/NumForCharRespTree/ java/Mesquite_Folder.3.70/mesquite/trees/NumForCharRespTree/NumForCharRespTree.class java/Mesquite_Folder.3.70/mesquite/trees/SetBranchLengthsFromNames/ java/Mesquite_Folder.3.70/mesquite/trees/SetBranchLengthsFromNames/SetBranchLengthsFromNames.class java/Mesquite_Folder.3.70/mesquite/trees/StoredTreeBlocks/ java/Mesquite_Folder.3.70/mesquite/trees/StoredTreeBlocks/StoredTreeBlocks.class java/Mesquite_Folder.3.70/mesquite/trees/SetToArbitrarySymmetrical/ java/Mesquite_Folder.3.70/mesquite/trees/SetToArbitrarySymmetrical/SetToArbitrarySymmetrical.class java/Mesquite_Folder.3.70/mesquite/trees/ConstrainNodeAge/ java/Mesquite_Folder.3.70/mesquite/trees/ConstrainNodeAge/anchorTool.gif java/Mesquite_Folder.3.70/mesquite/trees/ConstrainNodeAge/BranchNotesToolExtra.class java/Mesquite_Folder.3.70/mesquite/trees/ConstrainNodeAge/anchorWide.gif java/Mesquite_Folder.3.70/mesquite/trees/ConstrainNodeAge/anchor.gif java/Mesquite_Folder.3.70/mesquite/trees/ConstrainNodeAge/32anchorTool.gif java/Mesquite_Folder.3.70/mesquite/trees/ConstrainNodeAge/ConstrainNodeAge.class java/Mesquite_Folder.3.70/mesquite/trees/ConstrainNodeAge/64anchorTool.gif java/Mesquite_Folder.3.70/mesquite/trees/ObedientTreeWindow/ java/Mesquite_Folder.3.70/mesquite/trees/ObedientTreeWindow/ObedientTreeWindow.class java/Mesquite_Folder.3.70/mesquite/trees/ObedientTreeWindow/OTreeWindow.class java/Mesquite_Folder.3.70/mesquite/trees/SetAssumptionHard/ java/Mesquite_Folder.3.70/mesquite/trees/SetAssumptionHard/SetAssumptionHard.class java/Mesquite_Folder.3.70/mesquite/trees/SearchForBetterTree/ java/Mesquite_Folder.3.70/mesquite/trees/SearchForBetterTree/SearchForBetterTree.class java/Mesquite_Folder.3.70/mesquite/trees/NegativeToZeroBL/ java/Mesquite_Folder.3.70/mesquite/trees/NegativeToZeroBL/NegativeToZeroBL.class java/Mesquite_Folder.3.70/mesquite/trees/RatioLongestBranches/ java/Mesquite_Folder.3.70/mesquite/trees/RatioLongestBranches/RatioLongestBranches.class java/Mesquite_Folder.3.70/mesquite/trees/SetTreeDefaults/ java/Mesquite_Folder.3.70/mesquite/trees/SetTreeDefaults/SetTreeDefaults.class java/Mesquite_Folder.3.70/mesquite/trees/Ultrametricize/ java/Mesquite_Folder.3.70/mesquite/trees/Ultrametricize/Ultrametricize.class java/Mesquite_Folder.3.70/mesquite/trees/AlterTrees/ java/Mesquite_Folder.3.70/mesquite/trees/AlterTrees/AlterTrees.class java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/ java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/32triangle.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/32magnify.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/TreeWindowPalette.class java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/32scissors.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/TreeWindowSelectionRectangle.class java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/BranchInfoPanel.class java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/TreeScrollPane.class java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/zoomOut.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/RecentButton.class java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/BirdsEyeExtra.class java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/MagnifyExtra.class java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/64interchange.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/32zoomOut.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/32collapseall.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/magnify.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/32reverseLadderize.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/BasicTreeWindow.class java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/TreeSourceInfoPanel.class java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/32collapse.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/64reverseLadderize.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/64ladderize.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/32reroot.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/interchange.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/MessagePanel.class java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/64reroot.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/TreeInfoPanel.class java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/REALTreeScrollPane.class java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/collapseAllBelow.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/BasicTreeWindowMaker.class java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/64collapseall.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/64zoom.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/collapse.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/64scissors.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/32ladderize.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/64zoomOut.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/64triangle.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/zoom.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/BirdsEyePanel.class java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/collapseall.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/TreeScroll.class java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/64collapse.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/BasicTreeStatisticsPanel.class java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/32collapseAllBelow.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/reroot.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/reverseLadderize.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/ladderize.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/32interchange.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/64magnify.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/ControlStrip.class java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/32zoom.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/scissors.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/TWScroll.class java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/triangle.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/64collapseAllBelow.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/recent/ java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/recent/recent6.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/recent/recent7.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/recent/recent5.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/recent/recent4.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/recent/recent0.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/recent/recent1.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/recent/recent3.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/recent/recent2.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/recent/recent9.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/recent/recent8.gif java/Mesquite_Folder.3.70/mesquite/trees/BasicTreeWindowMaker/recent/recent10.gif java/Mesquite_Folder.3.70/mesquite/trees/NumAttachedToTree/ java/Mesquite_Folder.3.70/mesquite/trees/NumAttachedToTree/NumAttachedToTree.class java/Mesquite_Folder.3.70/mesquite/trees/ScaleBranchLengths/ java/Mesquite_Folder.3.70/mesquite/trees/ScaleBranchLengths/ScaleBranchLengths.class java/Mesquite_Folder.3.70/mesquite/trees/MultiTreeWindowMaker/ java/Mesquite_Folder.3.70/mesquite/trees/MultiTreeWindowMaker/MTWScroll.class java/Mesquite_Folder.3.70/mesquite/trees/MultiTreeWindowMaker/MultiTreeWindowMaker.class java/Mesquite_Folder.3.70/mesquite/trees/MultiTreeWindowMaker/MultiTreeWindow.class java/Mesquite_Folder.3.70/mesquite/trees/AllUnassignBrLengths1/ java/Mesquite_Folder.3.70/mesquite/trees/AllUnassignBrLengths1/AllUnassignBrLengths1.class java/Mesquite_Folder.3.70/mesquite/trees/EqualRatesMarkovSp/ java/Mesquite_Folder.3.70/mesquite/trees/EqualRatesMarkovSp/EqualRatesMarkovSp.class java/Mesquite_Folder.3.70/mesquite/trees/ManyTreesFromFile/ java/Mesquite_Folder.3.70/mesquite/trees/ManyTreesFromFile/ManyTreesFromFile.class java/Mesquite_Folder.3.70/mesquite/categ/ java/Mesquite_Folder.3.70/mesquite/categ/MultistateToMissing/ java/Mesquite_Folder.3.70/mesquite/categ/MultistateToMissing/MultistateToMissing.class java/Mesquite_Folder.3.70/mesquite/categ/StateConsistencyStrip/ java/Mesquite_Folder.3.70/mesquite/categ/StateConsistencyStrip/StateConsistencyStrip.class java/Mesquite_Folder.3.70/mesquite/categ/CategVariable/ java/Mesquite_Folder.3.70/mesquite/categ/CategVariable/CategVariable.class java/Mesquite_Folder.3.70/mesquite/categ/SmallStateNamesEditor/ java/Mesquite_Folder.3.70/mesquite/categ/SmallStateNamesEditor/StatesField.class java/Mesquite_Folder.3.70/mesquite/categ/SmallStateNamesEditor/NameField$KListener.class java/Mesquite_Folder.3.70/mesquite/categ/SmallStateNamesEditor/SmallStateNamesEditor.class java/Mesquite_Folder.3.70/mesquite/categ/SmallStateNamesEditor/SStateNamesPanel.class java/Mesquite_Folder.3.70/mesquite/categ/SmallStateNamesEditor/NameField.class java/Mesquite_Folder.3.70/mesquite/categ/ManageDNARNAChars/ java/Mesquite_Folder.3.70/mesquite/categ/ManageDNARNAChars/ManageDNARNAChars.class java/Mesquite_Folder.3.70/mesquite/categ/StateNamesStrip/ java/Mesquite_Folder.3.70/mesquite/categ/StateNamesStrip/StateNamesStrip.class java/Mesquite_Folder.3.70/mesquite/categ/StateNamesStrip/Ledge.class java/Mesquite_Folder.3.70/mesquite/categ/StateFrequency/ java/Mesquite_Folder.3.70/mesquite/categ/StateFrequency/StateFrequency.class java/Mesquite_Folder.3.70/mesquite/categ/explanation.txt java/Mesquite_Folder.3.70/mesquite/categ/RemoveInvariant/ java/Mesquite_Folder.3.70/mesquite/categ/RemoveInvariant/RemoveInvariant.class java/Mesquite_Folder.3.70/mesquite/categ/aCategIntro/ java/Mesquite_Folder.3.70/mesquite/categ/aCategIntro/aCategIntro.class java/Mesquite_Folder.3.70/mesquite/categ/StateConsistencyInWindowStrip/ java/Mesquite_Folder.3.70/mesquite/categ/StateConsistencyInWindowStrip/StateConsistencyInWindowStrip.class java/Mesquite_Folder.3.70/mesquite/categ/StateNamesEditor/ java/Mesquite_Folder.3.70/mesquite/categ/StateNamesEditor/StateNamesTable.class java/Mesquite_Folder.3.70/mesquite/categ/StateNamesEditor/transpose.gif java/Mesquite_Folder.3.70/mesquite/categ/StateNamesEditor/StateNamesEditor.class java/Mesquite_Folder.3.70/mesquite/categ/StateNamesEditor/StateAnnotation.class java/Mesquite_Folder.3.70/mesquite/categ/StateNamesEditor/StateNamesWindow.class java/Mesquite_Folder.3.70/mesquite/categ/ManageProteinChars/ java/Mesquite_Folder.3.70/mesquite/categ/ManageProteinChars/ManageProteinChars.class java/Mesquite_Folder.3.70/mesquite/categ/ConsensusStateForChar/ java/Mesquite_Folder.3.70/mesquite/categ/ConsensusStateForChar/ConsensusStateForChar.class java/Mesquite_Folder.3.70/mesquite/categ/ResolveStateAmbiguity/ java/Mesquite_Folder.3.70/mesquite/categ/ResolveStateAmbiguity/ResolveStateAmbiguity.class java/Mesquite_Folder.3.70/mesquite/categ/NumberOfStates/ java/Mesquite_Folder.3.70/mesquite/categ/NumberOfStates/NumberOfStates.class java/Mesquite_Folder.3.70/mesquite/categ/ManageCategoricalChars/ java/Mesquite_Folder.3.70/mesquite/categ/ManageCategoricalChars/ManageCategoricalChars.class java/Mesquite_Folder.3.70/mesquite/categ/ManageCategoricalChars/CategNexusCommandTest.class java/Mesquite_Folder.3.70/mesquite/categ/AmbiguityToPolym/ java/Mesquite_Folder.3.70/mesquite/categ/AmbiguityToPolym/AmbiguityToPolym.class java/Mesquite_Folder.3.70/mesquite/categ/lib/ java/Mesquite_Folder.3.70/mesquite/categ/lib/MCategoricalStates.class java/Mesquite_Folder.3.70/mesquite/categ/lib/MolecularState.class java/Mesquite_Folder.3.70/mesquite/categ/lib/DNADataAltererCon.class java/Mesquite_Folder.3.70/mesquite/categ/lib/RequiresExactlyCategoricalData.class java/Mesquite_Folder.3.70/mesquite/categ/lib/RequiresAnyDNAData.class java/Mesquite_Folder.3.70/mesquite/categ/lib/CategStateChanges.class java/Mesquite_Folder.3.70/mesquite/categ/lib/DNAState.class java/Mesquite_Folder.3.70/mesquite/categ/lib/CategDataEditorInit.class java/Mesquite_Folder.3.70/mesquite/categ/lib/MProteinAdjustable.class java/Mesquite_Folder.3.70/mesquite/categ/lib/DNADataSearcher.class java/Mesquite_Folder.3.70/mesquite/categ/lib/MolecDataEditorInit.class java/Mesquite_Folder.3.70/mesquite/categ/lib/MolecularDataUtil.class java/Mesquite_Folder.3.70/mesquite/categ/lib/CategStateForCharacter.class java/Mesquite_Folder.3.70/mesquite/categ/lib/RequiresAnyMolecularData.class java/Mesquite_Folder.3.70/mesquite/categ/lib/CategColorTable.class java/Mesquite_Folder.3.70/mesquite/categ/lib/CategoricalEmbedded.class java/Mesquite_Folder.3.70/mesquite/categ/lib/MProteinHistory.class java/Mesquite_Folder.3.70/mesquite/categ/lib/DNADataUtility.class java/Mesquite_Folder.3.70/mesquite/categ/lib/DNAEmbedded.class java/Mesquite_Folder.3.70/mesquite/categ/lib/DNACharacterHistory.class java/Mesquite_Folder.3.70/mesquite/categ/lib/ProteinState.class java/Mesquite_Folder.3.70/mesquite/categ/lib/RNACharacterAdjustable.class java/Mesquite_Folder.3.70/mesquite/categ/lib/OffersProteinData.class java/Mesquite_Folder.3.70/mesquite/categ/lib/DNACharacterAdjustable.class java/Mesquite_Folder.3.70/mesquite/categ/lib/DNAColorTable.class java/Mesquite_Folder.3.70/mesquite/categ/lib/ProteinCharacterHistory.class java/Mesquite_Folder.3.70/mesquite/categ/lib/ProteinEmbedded.class java/Mesquite_Folder.3.70/mesquite/categ/lib/MCategoricalAdjustable.class java/Mesquite_Folder.3.70/mesquite/categ/lib/MesquiteSequence.class java/Mesquite_Folder.3.70/mesquite/categ/lib/ProteinData.class java/Mesquite_Folder.3.70/mesquite/categ/lib/CategDataAlterer.class java/Mesquite_Folder.3.70/mesquite/categ/lib/RNACharacterHistory.class java/Mesquite_Folder.3.70/mesquite/categ/lib/MolecularData.class java/Mesquite_Folder.3.70/mesquite/categ/lib/CategoricalState.class java/Mesquite_Folder.3.70/mesquite/categ/lib/CategDataEditorInitD.class java/Mesquite_Folder.3.70/mesquite/categ/lib/CategTModel.class java/Mesquite_Folder.3.70/mesquite/categ/lib/MDNAEmbedded.class java/Mesquite_Folder.3.70/mesquite/categ/lib/MCategoricalDistribution.class java/Mesquite_Folder.3.70/mesquite/categ/lib/MDNAHistory.class java/Mesquite_Folder.3.70/mesquite/categ/lib/DNADataAlterer.class java/Mesquite_Folder.3.70/mesquite/categ/lib/RNAData.class java/Mesquite_Folder.3.70/mesquite/categ/lib/MProteinEmbedded.class java/Mesquite_Folder.3.70/mesquite/categ/lib/CategoricalDistribution.class java/Mesquite_Folder.3.70/mesquite/categ/lib/CategoricalStates.class java/Mesquite_Folder.3.70/mesquite/categ/lib/CategDataMatcher.class java/Mesquite_Folder.3.70/mesquite/categ/lib/OffersCategoricalData.class java/Mesquite_Folder.3.70/mesquite/categ/lib/MDNAAdjustable.class java/Mesquite_Folder.3.70/mesquite/categ/lib/ProteinAdjustable.class java/Mesquite_Folder.3.70/mesquite/categ/lib/DNAData.class java/Mesquite_Folder.3.70/mesquite/categ/lib/CategTModelEditWindow.class java/Mesquite_Folder.3.70/mesquite/categ/lib/OffersDNAData.class java/Mesquite_Folder.3.70/mesquite/categ/lib/MCategoricalEmbedded.class java/Mesquite_Folder.3.70/mesquite/categ/lib/RNAState.class java/Mesquite_Folder.3.70/mesquite/categ/lib/CategoricalData.class java/Mesquite_Folder.3.70/mesquite/categ/lib/ProteinColorTable.class java/Mesquite_Folder.3.70/mesquite/categ/lib/CategMatrixManager.class java/Mesquite_Folder.3.70/mesquite/categ/lib/CategDataUtility.class java/Mesquite_Folder.3.70/mesquite/categ/lib/CategDataSearcher.class java/Mesquite_Folder.3.70/mesquite/categ/lib/CategoricalAdjustable.class java/Mesquite_Folder.3.70/mesquite/categ/lib/RequiresAnyCategoricalData.class java/Mesquite_Folder.3.70/mesquite/categ/lib/RequiresProteinData.class java/Mesquite_Folder.3.70/mesquite/categ/lib/MolecularDataAlterer.class java/Mesquite_Folder.3.70/mesquite/categ/lib/CategInternodeEvent.class java/Mesquite_Folder.3.70/mesquite/categ/lib/MCategoricalHistory.class java/Mesquite_Folder.3.70/mesquite/categ/lib/CategTModelTable.class java/Mesquite_Folder.3.70/mesquite/categ/lib/CategoricalHistory.class java/Mesquite_Folder.3.70/mesquite/categ/ConsensusSequenceStrip/ java/Mesquite_Folder.3.70/mesquite/categ/ConsensusSequenceStrip/ConsensusSequenceStrip.class java/Mesquite_Folder.3.70/mesquite/categ/ConsensusSequenceStrip/consensus.gif java/Mesquite_Folder.3.70/mesquite/categ/PolymToAmbiguity/ java/Mesquite_Folder.3.70/mesquite/categ/PolymToAmbiguity/PolymToAmbiguity.class java/Mesquite_Folder.3.70/mesquite/categ/ProportionUniqueStates/ java/Mesquite_Folder.3.70/mesquite/categ/ProportionUniqueStates/ProportionUniqueStates.class java/Mesquite_Folder.3.70/mesquite/molec/ java/Mesquite_Folder.3.70/mesquite/molec/ManageCodeSets/ java/Mesquite_Folder.3.70/mesquite/molec/ManageCodeSets/ManageCodeSets.class java/Mesquite_Folder.3.70/mesquite/molec/ManageCodeSets/TypesetNexusCommandTest.class java/Mesquite_Folder.3.70/mesquite/molec/CompareBasesWithTaxon/ java/Mesquite_Folder.3.70/mesquite/molec/CompareBasesWithTaxon/CompareBasesWithTaxon.class java/Mesquite_Folder.3.70/mesquite/molec/FindPartialTriplet/ java/Mesquite_Folder.3.70/mesquite/molec/FindPartialTriplet/FindPartialTriplet.class java/Mesquite_Folder.3.70/mesquite/molec/ColorTaxonByNumber/ java/Mesquite_Folder.3.70/mesquite/molec/ColorTaxonByNumber/ColorTaxonByNumber.class java/Mesquite_Folder.3.70/mesquite/molec/AssignGeneticCode/ java/Mesquite_Folder.3.70/mesquite/molec/AssignGeneticCode/AssignGeneticCode.class java/Mesquite_Folder.3.70/mesquite/molec/GCAsNumber/ java/Mesquite_Folder.3.70/mesquite/molec/GCAsNumber/GCAsNumber.class java/Mesquite_Folder.3.70/mesquite/molec/TrimTermPartTriplets/ java/Mesquite_Folder.3.70/mesquite/molec/TrimTermPartTriplets/TrimTermPartTriplets.class java/Mesquite_Folder.3.70/mesquite/molec/SiteProperty/ java/Mesquite_Folder.3.70/mesquite/molec/SiteProperty/SiteProperty.class java/Mesquite_Folder.3.70/mesquite/molec/NCBIBlaster/ java/Mesquite_Folder.3.70/mesquite/molec/NCBIBlaster/NCBIBlaster.class java/Mesquite_Folder.3.70/mesquite/molec/AAHydrophobicity/ java/Mesquite_Folder.3.70/mesquite/molec/AAHydrophobicity/AAHydrophobicity.class java/Mesquite_Folder.3.70/mesquite/molec/CGBiasOfTaxon/ java/Mesquite_Folder.3.70/mesquite/molec/CGBiasOfTaxon/CGBiasOfTaxon.class java/Mesquite_Folder.3.70/mesquite/molec/ToUpperCase/ java/Mesquite_Folder.3.70/mesquite/molec/ToUpperCase/ToUpperCase.class java/Mesquite_Folder.3.70/mesquite/molec/TopBlastMatches/ java/Mesquite_Folder.3.70/mesquite/molec/TopBlastMatches/TopBlastMatches.class java/Mesquite_Folder.3.70/mesquite/molec/CleanUpMatrix/ java/Mesquite_Folder.3.70/mesquite/molec/CleanUpMatrix/CleanUpMatrix.class java/Mesquite_Folder.3.70/mesquite/molec/ReverseComplement/ java/Mesquite_Folder.3.70/mesquite/molec/ReverseComplement/ReverseComplement.class java/Mesquite_Folder.3.70/mesquite/molec/CollapseEdges/ java/Mesquite_Folder.3.70/mesquite/molec/CollapseEdges/CollapseEdges.class java/Mesquite_Folder.3.70/mesquite/molec/AvgSequenceLengthMatrix/ java/Mesquite_Folder.3.70/mesquite/molec/AvgSequenceLengthMatrix/AvgSequenceLengthMatrix.class java/Mesquite_Folder.3.70/mesquite/molec/AminoAcidProperties/ java/Mesquite_Folder.3.70/mesquite/molec/AminoAcidProperties/AminoAcidProperties.class java/Mesquite_Folder.3.70/mesquite/molec/GBLOCKSSelector/ java/Mesquite_Folder.3.70/mesquite/molec/GBLOCKSSelector/GBLOCKSSelector.class java/Mesquite_Folder.3.70/mesquite/molec/SequenceInfoEditor/ java/Mesquite_Folder.3.70/mesquite/molec/SequenceInfoEditor/NoteField.class java/Mesquite_Folder.3.70/mesquite/molec/SequenceInfoEditor/SequenceInfoEditor.class java/Mesquite_Folder.3.70/mesquite/molec/SequenceInfoEditor/NoteField$KListener.class java/Mesquite_Folder.3.70/mesquite/molec/SequenceInfoEditor/SequenceInfoPanel.class java/Mesquite_Folder.3.70/mesquite/molec/explanation.txt java/Mesquite_Folder.3.70/mesquite/molec/PublicationCode/ java/Mesquite_Folder.3.70/mesquite/molec/PublicationCode/PublicationCode.class java/Mesquite_Folder.3.70/mesquite/molec/NucleotideComplement/ java/Mesquite_Folder.3.70/mesquite/molec/NucleotideComplement/NucleotideComplement.class java/Mesquite_Folder.3.70/mesquite/molec/PercentLowerCase/ java/Mesquite_Folder.3.70/mesquite/molec/PercentLowerCase/PercentLowerCase.class java/Mesquite_Folder.3.70/mesquite/molec/StoredGenCodeModel/ java/Mesquite_Folder.3.70/mesquite/molec/StoredGenCodeModel/StoredGenCodeModel.class java/Mesquite_Folder.3.70/mesquite/molec/StoredGenCodeModel/GenCodeModelCompatInfo.class java/Mesquite_Folder.3.70/mesquite/molec/ReverseSequence/ java/Mesquite_Folder.3.70/mesquite/molec/ReverseSequence/ReverseSequence.class java/Mesquite_Folder.3.70/mesquite/molec/SequenceLength/ java/Mesquite_Folder.3.70/mesquite/molec/SequenceLength/SequenceLength.class java/Mesquite_Folder.3.70/mesquite/molec/FillCharSelection/ java/Mesquite_Folder.3.70/mesquite/molec/FillCharSelection/FillCharSelection.class java/Mesquite_Folder.3.70/mesquite/molec/PropUnambigSites/ java/Mesquite_Folder.3.70/mesquite/molec/PropUnambigSites/PropUnambigSites.class java/Mesquite_Folder.3.70/mesquite/molec/BLASTSearch/ java/Mesquite_Folder.3.70/mesquite/molec/BLASTSearch/BLASTSearch.class java/Mesquite_Folder.3.70/mesquite/molec/InitializeGenCode/ java/Mesquite_Folder.3.70/mesquite/molec/InitializeGenCode/InitializeGenCode.class java/Mesquite_Folder.3.70/mesquite/molec/MatchingSequence/ java/Mesquite_Folder.3.70/mesquite/molec/MatchingSequence/MatchingSequence.class java/Mesquite_Folder.3.70/mesquite/molec/ToLowerCase/ java/Mesquite_Folder.3.70/mesquite/molec/ToLowerCase/ToLowerCase.class java/Mesquite_Folder.3.70/mesquite/molec/TaxonGCBias/ java/Mesquite_Folder.3.70/mesquite/molec/TaxonGCBias/TaxonGCBias.class java/Mesquite_Folder.3.70/mesquite/molec/TaxonGCBias/GCBiasCharacter.class java/Mesquite_Folder.3.70/mesquite/molec/PercentMissingInTaxon/ java/Mesquite_Folder.3.70/mesquite/molec/PercentMissingInTaxon/PercentMissingInTaxon.class java/Mesquite_Folder.3.70/mesquite/molec/LocalBlaster/ java/Mesquite_Folder.3.70/mesquite/molec/LocalBlaster/LocalBlaster.class java/Mesquite_Folder.3.70/mesquite/molec/CurrentGenCodeModels/ java/Mesquite_Folder.3.70/mesquite/molec/CurrentGenCodeModels/CurrentGenCodeModels.class java/Mesquite_Folder.3.70/mesquite/molec/FetchAndAddGenBank/ java/Mesquite_Folder.3.70/mesquite/molec/FetchAndAddGenBank/FetchAndAddGenBank.class java/Mesquite_Folder.3.70/mesquite/molec/ColorByAA/ java/Mesquite_Folder.3.70/mesquite/molec/ColorByAA/ColorByAA.class java/Mesquite_Folder.3.70/mesquite/molec/ColorOddAAs/ java/Mesquite_Folder.3.70/mesquite/molec/ColorOddAAs/ColorOddAAs.class java/Mesquite_Folder.3.70/mesquite/molec/FindSequence/ java/Mesquite_Folder.3.70/mesquite/molec/FindSequence/FindSequence.class java/Mesquite_Folder.3.70/mesquite/molec/GapsToMissing/ java/Mesquite_Folder.3.70/mesquite/molec/GapsToMissing/GapsToMissing.class java/Mesquite_Folder.3.70/mesquite/molec/MissingToGaps/ java/Mesquite_Folder.3.70/mesquite/molec/MissingToGaps/MissingToGaps.class java/Mesquite_Folder.3.70/mesquite/molec/NumInternalGapsMatrix/ java/Mesquite_Folder.3.70/mesquite/molec/NumInternalGapsMatrix/NumInternalGapsMatrix.class java/Mesquite_Folder.3.70/mesquite/molec/FindMissing/ java/Mesquite_Folder.3.70/mesquite/molec/FindMissing/FindMissing.class java/Mesquite_Folder.3.70/mesquite/molec/TermMissingToGaps/ java/Mesquite_Folder.3.70/mesquite/molec/TermMissingToGaps/TermMissingToGaps.class java/Mesquite_Folder.3.70/mesquite/molec/TermGapsToMissing/ java/Mesquite_Folder.3.70/mesquite/molec/TermGapsToMissing/TermGapsToMissing.class java/Mesquite_Folder.3.70/mesquite/molec/amino acid properties java/Mesquite_Folder.3.70/mesquite/molec/lib/ java/Mesquite_Folder.3.70/mesquite/molec/lib/SeqLedge.class java/Mesquite_Folder.3.70/mesquite/molec/lib/GenCodeModelCiliate.class java/Mesquite_Folder.3.70/mesquite/molec/lib/GenCodeInvertMito.class java/Mesquite_Folder.3.70/mesquite/molec/lib/GeneticCode.class java/Mesquite_Folder.3.70/mesquite/molec/lib/GenCodeYeastMito.class java/Mesquite_Folder.3.70/mesquite/molec/lib/AAProperty.class java/Mesquite_Folder.3.70/mesquite/molec/lib/GenCodeMoldProtMito.class java/Mesquite_Folder.3.70/mesquite/molec/lib/Blaster.class java/Mesquite_Folder.3.70/mesquite/molec/lib/DNADatabaseURLSource.class java/Mesquite_Folder.3.70/mesquite/molec/lib/GenCodeVertMito.class java/Mesquite_Folder.3.70/mesquite/molec/lib/GenCodeCiliate.class java/Mesquite_Folder.3.70/mesquite/molec/lib/GenCodeModelSet.class java/Mesquite_Folder.3.70/mesquite/molec/lib/GenCodeModelYeastMito.class java/Mesquite_Folder.3.70/mesquite/molec/lib/GenCodeModelEchino.class java/Mesquite_Folder.3.70/mesquite/molec/lib/GenCodeModelVertMito.class java/Mesquite_Folder.3.70/mesquite/molec/lib/GenCodeModelSource.class java/Mesquite_Folder.3.70/mesquite/molec/lib/FindSequenceCriterionG.class java/Mesquite_Folder.3.70/mesquite/molec/lib/BLASTResults.class java/Mesquite_Folder.3.70/mesquite/molec/lib/GenCodeBacteria.class java/Mesquite_Folder.3.70/mesquite/molec/lib/GenCodeEuplotid.class java/Mesquite_Folder.3.70/mesquite/molec/lib/GenCodeModel.class java/Mesquite_Folder.3.70/mesquite/molec/lib/GenCodeModelMoldProtMito.class java/Mesquite_Folder.3.70/mesquite/molec/lib/GenCodeModelStandard.class java/Mesquite_Folder.3.70/mesquite/molec/lib/GBLOCKSCalculator.class java/Mesquite_Folder.3.70/mesquite/molec/lib/Ledge.class java/Mesquite_Folder.3.70/mesquite/molec/lib/GenCodeModelEuplotid.class java/Mesquite_Folder.3.70/mesquite/molec/lib/SeqCheckThread.class java/Mesquite_Folder.3.70/mesquite/molec/lib/GenCodeModelInvertMito.class java/Mesquite_Folder.3.70/mesquite/molec/lib/GenCodeModelBacteria.class java/Mesquite_Folder.3.70/mesquite/molec/lib/FindSequenceCriterion.class java/Mesquite_Folder.3.70/mesquite/molec/lib/NCBIUtil.class java/Mesquite_Folder.3.70/mesquite/molec/lib/GenCodeStandard.class java/Mesquite_Folder.3.70/mesquite/molec/lib/GenCodeEchino.class java/Mesquite_Folder.3.70/mesquite/molec/lib/MaintainSequenceMatch.class java/Mesquite_Folder.3.70/mesquite/molec/AASize/ java/Mesquite_Folder.3.70/mesquite/molec/AASize/AASize.class java/Mesquite_Folder.3.70/mesquite/molec/NumLowerCase/ java/Mesquite_Folder.3.70/mesquite/molec/NumLowerCase/NumLowerCase.class java/Mesquite_Folder.3.70/mesquite/molec/TaxaListHasData/ java/Mesquite_Folder.3.70/mesquite/molec/TaxaListHasData/TaxaListHasData.class java/Mesquite_Folder.3.70/mesquite/molec/aMolecIntro/ java/Mesquite_Folder.3.70/mesquite/molec/aMolecIntro/aMolecIntro.class java/Mesquite_Folder.3.70/mesquite/molec/MeanValueLinked/ java/Mesquite_Folder.3.70/mesquite/molec/MeanValueLinked/MeanValueLinked.class java/Mesquite_Folder.3.70/mesquite/molec/CharacterGCBias/ java/Mesquite_Folder.3.70/mesquite/molec/CharacterGCBias/CharacterGCBias.class java/Mesquite_Folder.3.70/mesquite/molec/TargetSeqMatch/ java/Mesquite_Folder.3.70/mesquite/molec/TargetSeqMatch/TargetSeqMatch.class java/Mesquite_Folder.3.70/mesquite/molec/PercentGapsInTaxon/ java/Mesquite_Folder.3.70/mesquite/molec/PercentGapsInTaxon/PercentGapsInTaxon.class java/Mesquite_Folder.3.70/mesquite/molec/PropAmbiguousInTaxon/ java/Mesquite_Folder.3.70/mesquite/molec/PropAmbiguousInTaxon/PropAmbiguousInTaxon.class java/Mesquite_Folder.3.70/mesquite/molec/NumStopCodonsMatrix/ java/Mesquite_Folder.3.70/mesquite/molec/NumStopCodonsMatrix/NumStopCodonsMatrix.class java/Mesquite_Folder.3.70/mesquite/molec/GenBankNumber/ java/Mesquite_Folder.3.70/mesquite/molec/GenBankNumber/GenBankNumber.class java/Mesquite_Folder.3.70/mesquite/molec/ColorTaxonByNumDataInMatrices/ java/Mesquite_Folder.3.70/mesquite/molec/ColorTaxonByNumDataInMatrices/ColorTaxonByNumDataInMatrices.class java/Mesquite_Folder.3.70/mesquite/molec/NumberStopsInTaxon/ java/Mesquite_Folder.3.70/mesquite/molec/NumberStopsInTaxon/NumberStopsInTaxon.class java/Mesquite_Folder.3.70/mesquite/molec/PropInternalGaps/ java/Mesquite_Folder.3.70/mesquite/molec/PropInternalGaps/PropInternalGaps.class java/Mesquite_Folder.3.70/mesquite/molec/PropTerminalGaps/ java/Mesquite_Folder.3.70/mesquite/molec/PropTerminalGaps/PropTerminalGaps.class java/Mesquite_Folder.3.70/mesquite/molec/CharListGenCodeModels/ java/Mesquite_Folder.3.70/mesquite/molec/CharListGenCodeModels/CharListGenCodeModels.class java/Mesquite_Folder.3.70/mesquite/molec/LowercaseEnds/ java/Mesquite_Folder.3.70/mesquite/molec/LowercaseEnds/LowercaseEnds.class java/Mesquite_Folder.3.70/mesquite/molec/MultipleAlignService/ java/Mesquite_Folder.3.70/mesquite/molec/MultipleAlignService/MultipleAlignService.class java/Mesquite_Folder.3.70/mesquite/molec/ColorByNumber/ java/Mesquite_Folder.3.70/mesquite/molec/ColorByNumber/CbNCompatibilityTest.class java/Mesquite_Folder.3.70/mesquite/molec/ColorByNumber/ColorByNumber.class java/Mesquite_Folder.3.70/mesquite/molec/TranslateToProtein/ java/Mesquite_Folder.3.70/mesquite/molec/TranslateToProtein/TranslateToProtein.class java/Mesquite_Folder.3.70/mesquite/molec/GapsToFromMissing/ java/Mesquite_Folder.3.70/mesquite/molec/GapsToFromMissing/GapsToFromMissing.class java/Mesquite_Folder.3.70/mesquite/molec/CodesetList/ java/Mesquite_Folder.3.70/mesquite/molec/CodesetList/CodesetList.class java/Mesquite_Folder.3.70/mesquite/molec/ConvertToRY/ java/Mesquite_Folder.3.70/mesquite/molec/ConvertToRY/ConvertToRY.class java/Mesquite_Folder.3.70/mesquite/molec/MaintainClipMatch/ java/Mesquite_Folder.3.70/mesquite/molec/MaintainClipMatch/MaintainClipMatch.class java/Mesquite_Folder.3.70/mesquite/molec/PercentPolymorphic/ java/Mesquite_Folder.3.70/mesquite/molec/PercentPolymorphic/PercentPolymorphic.class java/Mesquite_Folder.3.70/mesquite/molec/NumberPolyInTaxon/ java/Mesquite_Folder.3.70/mesquite/molec/NumberPolyInTaxon/NumberPolyInTaxon.class java/Mesquite_Folder.3.70/mesquite/lists/ java/Mesquite_Folder.3.70/mesquite/lists/TaxonListCurrPartition/ java/Mesquite_Folder.3.70/mesquite/lists/TaxonListCurrPartition/TaxonListCurrPartition.class java/Mesquite_Folder.3.70/mesquite/lists/TreeListRooted/ java/Mesquite_Folder.3.70/mesquite/lists/TreeListRooted/TreeListRooted.class java/Mesquite_Folder.3.70/mesquite/lists/TaxonGroupListColor/ java/Mesquite_Folder.3.70/mesquite/lists/TaxonGroupListColor/TaxonGroupListColor.class java/Mesquite_Folder.3.70/mesquite/lists/TreesList/ java/Mesquite_Folder.3.70/mesquite/lists/TreesList/TreesListWindow.class java/Mesquite_Folder.3.70/mesquite/lists/TreesList/TreesList.class java/Mesquite_Folder.3.70/mesquite/lists/MatrixListVisible/ java/Mesquite_Folder.3.70/mesquite/lists/MatrixListVisible/MatrixListVisible.class java/Mesquite_Folder.3.70/mesquite/lists/TaxablockList/ java/Mesquite_Folder.3.70/mesquite/lists/TaxablockList/TaxablockList.class java/Mesquite_Folder.3.70/mesquite/lists/ModelsListWhole/ java/Mesquite_Folder.3.70/mesquite/lists/ModelsListWhole/ModelsListWhole.class java/Mesquite_Folder.3.70/mesquite/lists/DatasetsListTaxa/ java/Mesquite_Folder.3.70/mesquite/lists/DatasetsListTaxa/DatasetsListTaxa.class java/Mesquite_Folder.3.70/mesquite/lists/TaxonGroupListSymbol/ java/Mesquite_Folder.3.70/mesquite/lists/TaxonGroupListSymbol/TaxonGroupListSymbol.class java/Mesquite_Folder.3.70/mesquite/lists/ModelsListDatatype/ java/Mesquite_Folder.3.70/mesquite/lists/ModelsListDatatype/ModelsListDatatype.class java/Mesquite_Folder.3.70/mesquite/lists/TreeListPolys/ java/Mesquite_Folder.3.70/mesquite/lists/TreeListPolys/TreeListPolys.class java/Mesquite_Folder.3.70/mesquite/lists/CharInclSetList/ java/Mesquite_Folder.3.70/mesquite/lists/CharInclSetList/CharInclSetList.class java/Mesquite_Folder.3.70/mesquite/lists/TreeblockList/ java/Mesquite_Folder.3.70/mesquite/lists/TreeblockList/TreeblockList.class java/Mesquite_Folder.3.70/mesquite/lists/DatasetsListNumChars/ java/Mesquite_Folder.3.70/mesquite/lists/DatasetsListNumChars/DatasetsListNumChars.class java/Mesquite_Folder.3.70/mesquite/lists/TaxonGroupListSymbolSize/ java/Mesquite_Folder.3.70/mesquite/lists/TaxonGroupListSymbolSize/TaxonGroupListSymbolSize.class java/Mesquite_Folder.3.70/mesquite/lists/DefaultCharOrder/ java/Mesquite_Folder.3.70/mesquite/lists/DefaultCharOrder/DefaultCharOrder.class java/Mesquite_Folder.3.70/mesquite/lists/CharListPartition/ java/Mesquite_Folder.3.70/mesquite/lists/CharListPartition/CharListPartition.class java/Mesquite_Folder.3.70/mesquite/lists/ModelsListType/ java/Mesquite_Folder.3.70/mesquite/lists/ModelsListType/ModelsListType.class java/Mesquite_Folder.3.70/mesquite/lists/NumForCharMatrixList/ java/Mesquite_Folder.3.70/mesquite/lists/NumForCharMatrixList/NumForCharMatrixList.class java/Mesquite_Folder.3.70/mesquite/lists/TaxonListArchivedName/ java/Mesquite_Folder.3.70/mesquite/lists/TaxonListArchivedName/TaxonListArchivedName.class java/Mesquite_Folder.3.70/mesquite/lists/TaxaListUniqueID/ java/Mesquite_Folder.3.70/mesquite/lists/TaxaListUniqueID/TaxaListUniqueID.class java/Mesquite_Folder.3.70/mesquite/lists/ColorTaxon/ java/Mesquite_Folder.3.70/mesquite/lists/ColorTaxon/color.gif java/Mesquite_Folder.3.70/mesquite/lists/ColorTaxon/64color.gif java/Mesquite_Folder.3.70/mesquite/lists/ColorTaxon/ColorTaxon.class java/Mesquite_Folder.3.70/mesquite/lists/ColorTaxon/32color.gif java/Mesquite_Folder.3.70/mesquite/lists/CharGroupListColor/ java/Mesquite_Folder.3.70/mesquite/lists/CharGroupListColor/CharGroupListColor.class java/Mesquite_Folder.3.70/mesquite/lists/TaxonGroupListVisibility/ java/Mesquite_Folder.3.70/mesquite/lists/TaxonGroupListVisibility/TaxonGroupListVisibility.class java/Mesquite_Folder.3.70/mesquite/lists/explanation.txt java/Mesquite_Folder.3.70/mesquite/lists/TaxonGroupListNumTaxa/ java/Mesquite_Folder.3.70/mesquite/lists/TaxonGroupListNumTaxa/TaxonGroupListNumTaxa.class java/Mesquite_Folder.3.70/mesquite/lists/CharNumForList/ java/Mesquite_Folder.3.70/mesquite/lists/CharNumForList/CharNumForList.class java/Mesquite_Folder.3.70/mesquite/lists/CharSetListNum/ java/Mesquite_Folder.3.70/mesquite/lists/CharSetListNum/CharSetListNum.class java/Mesquite_Folder.3.70/mesquite/lists/TaxaPartListNumGroups/ java/Mesquite_Folder.3.70/mesquite/lists/TaxaPartListNumGroups/TaxaPartListNumGroups.class java/Mesquite_Folder.3.70/mesquite/lists/CharListWeights/ java/Mesquite_Folder.3.70/mesquite/lists/CharListWeights/CharListWeights.class java/Mesquite_Folder.3.70/mesquite/lists/CharacterList/ java/Mesquite_Folder.3.70/mesquite/lists/CharacterList/CharacterListWindow.class java/Mesquite_Folder.3.70/mesquite/lists/CharacterList/CharacterList.class java/Mesquite_Folder.3.70/mesquite/lists/TaxonList/ java/Mesquite_Folder.3.70/mesquite/lists/TaxonList/TaxonListWindow.class java/Mesquite_Folder.3.70/mesquite/lists/TaxonList/TaxonList.class java/Mesquite_Folder.3.70/mesquite/lists/MarkTaxonInList/ java/Mesquite_Folder.3.70/mesquite/lists/MarkTaxonInList/MarkTaxonInList.class java/Mesquite_Folder.3.70/mesquite/lists/TaxonGroupList/ java/Mesquite_Folder.3.70/mesquite/lists/TaxonGroupList/TaxonGroupList.class java/Mesquite_Folder.3.70/mesquite/lists/TaxonGroupList/TaxonGroupListWindow.class java/Mesquite_Folder.3.70/mesquite/lists/CharacterStats/ java/Mesquite_Folder.3.70/mesquite/lists/CharacterStats/CharacterStats.class java/Mesquite_Folder.3.70/mesquite/lists/TaxablockListNumber/ java/Mesquite_Folder.3.70/mesquite/lists/TaxablockListNumber/TaxablockListNumber.class java/Mesquite_Folder.3.70/mesquite/lists/DatasetsListDuplicate/ java/Mesquite_Folder.3.70/mesquite/lists/DatasetsListDuplicate/DatasetsListDuplicate.class java/Mesquite_Folder.3.70/mesquite/lists/BooleanForCharList/ java/Mesquite_Folder.3.70/mesquite/lists/BooleanForCharList/BooleanForCharList.class java/Mesquite_Folder.3.70/mesquite/lists/NumForTreeblockList/ java/Mesquite_Folder.3.70/mesquite/lists/NumForTreeblockList/NumForTreeblockList.class java/Mesquite_Folder.3.70/mesquite/lists/CharSetMembershipListAsst/ java/Mesquite_Folder.3.70/mesquite/lists/CharSetMembershipListAsst/CharSetMembershipListAsst.class java/Mesquite_Folder.3.70/mesquite/lists/CharGroupList/ java/Mesquite_Folder.3.70/mesquite/lists/CharGroupList/CharGroupList.class java/Mesquite_Folder.3.70/mesquite/lists/CharGroupList/CharGroupListWindow.class java/Mesquite_Folder.3.70/mesquite/lists/TaxonListAnnotPanel/ java/Mesquite_Folder.3.70/mesquite/lists/TaxonListAnnotPanel/TaxonListAnnotPanel.class java/Mesquite_Folder.3.70/mesquite/lists/TaxonListVoucherDB/ java/Mesquite_Folder.3.70/mesquite/lists/TaxonListVoucherDB/TaxonListVoucherDB.class java/Mesquite_Folder.3.70/mesquite/lists/NumForTaxaList/ java/Mesquite_Folder.3.70/mesquite/lists/NumForTaxaList/NumForTaxaList.class java/Mesquite_Folder.3.70/mesquite/lists/CharInclSetListNum/ java/Mesquite_Folder.3.70/mesquite/lists/CharInclSetListNum/CharInclSetListNum.class java/Mesquite_Folder.3.70/mesquite/lists/BooleanForTaxaList/ java/Mesquite_Folder.3.70/mesquite/lists/BooleanForTaxaList/BooleanForTaxaList.class java/Mesquite_Folder.3.70/mesquite/lists/WeightSetList/ java/Mesquite_Folder.3.70/mesquite/lists/WeightSetList/WeightSetList.class java/Mesquite_Folder.3.70/mesquite/lists/CharListUniqueID/ java/Mesquite_Folder.3.70/mesquite/lists/CharListUniqueID/CharListUniqueID.class java/Mesquite_Folder.3.70/mesquite/lists/aListsIntro/ java/Mesquite_Folder.3.70/mesquite/lists/aListsIntro/aListsIntro.class java/Mesquite_Folder.3.70/mesquite/lists/TaxaSetListNum/ java/Mesquite_Folder.3.70/mesquite/lists/TaxaSetListNum/TaxaSetListNum.class java/Mesquite_Folder.3.70/mesquite/lists/CharListInclusion/ java/Mesquite_Folder.3.70/mesquite/lists/CharListInclusion/CharListInclusion.class java/Mesquite_Folder.3.70/mesquite/lists/TreeblocksListNumber/ java/Mesquite_Folder.3.70/mesquite/lists/TreeblocksListNumber/TreeblocksListNumber.class java/Mesquite_Folder.3.70/mesquite/lists/CharListCodonPos/ java/Mesquite_Folder.3.70/mesquite/lists/CharListCodonPos/CharListCodonPos.class java/Mesquite_Folder.3.70/mesquite/lists/lib/ java/Mesquite_Folder.3.70/mesquite/lists/lib/CharListModel.class java/Mesquite_Folder.3.70/mesquite/lists/lib/LTCellAnnotation.class java/Mesquite_Folder.3.70/mesquite/lists/lib/TreeListAssistant.class java/Mesquite_Folder.3.70/mesquite/lists/lib/TreeblocksListAssistant.class java/Mesquite_Folder.3.70/mesquite/lists/lib/TaxaListAssistantI.class java/Mesquite_Folder.3.70/mesquite/lists/lib/ListAssistant.class java/Mesquite_Folder.3.70/mesquite/lists/lib/GroupDialog.class java/Mesquite_Folder.3.70/mesquite/lists/lib/CharListAssistant.class java/Mesquite_Folder.3.70/mesquite/lists/lib/TaxaPartListAssistant.class java/Mesquite_Folder.3.70/mesquite/lists/lib/ListableVectorWindow.class java/Mesquite_Folder.3.70/mesquite/lists/lib/ModelsListAssistant.class java/Mesquite_Folder.3.70/mesquite/lists/lib/CharGroupListAssistant.class java/Mesquite_Folder.3.70/mesquite/lists/lib/TaxonListAssistant.class java/Mesquite_Folder.3.70/mesquite/lists/lib/TaxaBlocksListAssistant.class java/Mesquite_Folder.3.70/mesquite/lists/lib/DataSpecssetList.class java/Mesquite_Folder.3.70/mesquite/lists/lib/ListLVModule.class java/Mesquite_Folder.3.70/mesquite/lists/lib/TreeListInit.class java/Mesquite_Folder.3.70/mesquite/lists/lib/ListTable.class java/Mesquite_Folder.3.70/mesquite/lists/lib/DataSpecsListWindow.class java/Mesquite_Folder.3.70/mesquite/lists/lib/DatasetsListUtility.class java/Mesquite_Folder.3.70/mesquite/lists/lib/TaxonGroupListAssistant.class java/Mesquite_Folder.3.70/mesquite/lists/lib/TaxaListPartitionUtil.class java/Mesquite_Folder.3.70/mesquite/lists/lib/CharListPartitionUtil.class java/Mesquite_Folder.3.70/mesquite/lists/lib/TaxaSpecsListWindow.class java/Mesquite_Folder.3.70/mesquite/lists/lib/CharMatricesListWindow.class java/Mesquite_Folder.3.70/mesquite/lists/lib/TaxaSetListAssistant.class java/Mesquite_Folder.3.70/mesquite/lists/lib/CharListAssistantI.class java/Mesquite_Folder.3.70/mesquite/lists/lib/ListModule.class java/Mesquite_Folder.3.70/mesquite/lists/lib/GroupSymbolsDialog.class java/Mesquite_Folder.3.70/mesquite/lists/lib/TaxaBlocksListUtility.class java/Mesquite_Folder.3.70/mesquite/lists/lib/DataSetsListAssistant.class java/Mesquite_Folder.3.70/mesquite/lists/lib/TreeBlockListUtility.class java/Mesquite_Folder.3.70/mesquite/lists/lib/ArchivedTaxonNamesListAssistant.class java/Mesquite_Folder.3.70/mesquite/lists/lib/TaxaSpecssetList.class java/Mesquite_Folder.3.70/mesquite/lists/lib/CharInclSetListAsst.class java/Mesquite_Folder.3.70/mesquite/lists/lib/ModelSetListAsst.class java/Mesquite_Folder.3.70/mesquite/lists/lib/TreeListUtility.class java/Mesquite_Folder.3.70/mesquite/lists/lib/ListWindow.class java/Mesquite_Folder.3.70/mesquite/lists/lib/CharSetListAsst.class java/Mesquite_Folder.3.70/mesquite/lists/NexusBlockList/ java/Mesquite_Folder.3.70/mesquite/lists/NexusBlockList/NexusBlockList.class java/Mesquite_Folder.3.70/mesquite/lists/DatasetList/ java/Mesquite_Folder.3.70/mesquite/lists/DatasetList/DatasetList.class java/Mesquite_Folder.3.70/mesquite/lists/CharSetList/ java/Mesquite_Folder.3.70/mesquite/lists/CharSetList/CharSetList.class java/Mesquite_Folder.3.70/mesquite/lists/CharListAnnotPanel/ java/Mesquite_Folder.3.70/mesquite/lists/CharListAnnotPanel/CharListAnnotPanel.class java/Mesquite_Folder.3.70/mesquite/lists/CodePosSetsList/ java/Mesquite_Folder.3.70/mesquite/lists/CodePosSetsList/CodePosSetsList.class java/Mesquite_Folder.3.70/mesquite/lists/BooleanForTreeList/ java/Mesquite_Folder.3.70/mesquite/lists/BooleanForTreeList/BooleanForTreeList.class java/Mesquite_Folder.3.70/mesquite/lists/DatasetsListConcatenate/ java/Mesquite_Folder.3.70/mesquite/lists/DatasetsListConcatenate/DatasetsListConcatenate.class java/Mesquite_Folder.3.70/mesquite/lists/TreeListAttachment/ java/Mesquite_Folder.3.70/mesquite/lists/TreeListAttachment/TreeListAttachment.class java/Mesquite_Folder.3.70/mesquite/lists/DefaultTaxaOrder/ java/Mesquite_Folder.3.70/mesquite/lists/DefaultTaxaOrder/DefaultTaxaOrder.class java/Mesquite_Folder.3.70/mesquite/lists/ModelsListParadigm/ java/Mesquite_Folder.3.70/mesquite/lists/ModelsListParadigm/ModelsListParadigm.class java/Mesquite_Folder.3.70/mesquite/lists/NumForTreeList/ java/Mesquite_Folder.3.70/mesquite/lists/NumForTreeList/NumForTreeList.class java/Mesquite_Folder.3.70/mesquite/lists/ModelsList/ java/Mesquite_Folder.3.70/mesquite/lists/ModelsList/ModelsListWindow.class java/Mesquite_Folder.3.70/mesquite/lists/ModelsList/ModelsList.class java/Mesquite_Folder.3.70/mesquite/lists/TaxonListShowAllHasData/ java/Mesquite_Folder.3.70/mesquite/lists/TaxonListShowAllHasData/TaxonListShowAllHasData.class java/Mesquite_Folder.3.70/mesquite/lists/MatrixListEditable/ java/Mesquite_Folder.3.70/mesquite/lists/MatrixListEditable/MatrixListEditable.class java/Mesquite_Folder.3.70/mesquite/lists/TreeListPolyAssumption/ java/Mesquite_Folder.3.70/mesquite/lists/TreeListPolyAssumption/TreeListPolyAssumption.class java/Mesquite_Folder.3.70/mesquite/lists/TaxonListVoucherCode/ java/Mesquite_Folder.3.70/mesquite/lists/TaxonListVoucherCode/TaxonListVoucherCode.class java/Mesquite_Folder.3.70/mesquite/lists/CharPartitionList/ java/Mesquite_Folder.3.70/mesquite/lists/CharPartitionList/CharPartitionList.class java/Mesquite_Folder.3.70/mesquite/lists/DatasetsListClass/ java/Mesquite_Folder.3.70/mesquite/lists/DatasetsListClass/DatasetsListClass.class java/Mesquite_Folder.3.70/mesquite/lists/TreeblocksListTaxa/ java/Mesquite_Folder.3.70/mesquite/lists/TreeblocksListTaxa/TreeblocksListTaxa.class java/Mesquite_Folder.3.70/mesquite/lists/TaxaPartitionList/ java/Mesquite_Folder.3.70/mesquite/lists/TaxaPartitionList/TaxaPartitionList.class java/Mesquite_Folder.3.70/mesquite/lists/TaxonSetList/ java/Mesquite_Folder.3.70/mesquite/lists/TaxonSetList/TaxonSetList.class java/Mesquite_Folder.3.70/mesquite/externalCommunication/ java/Mesquite_Folder.3.70/mesquite/externalCommunication/lib/ java/Mesquite_Folder.3.70/mesquite/externalCommunication/lib/RESTCommunicator.class java/Mesquite_Folder.3.70/mesquite/externalCommunication/lib/RemoteJobFile.class java/Mesquite_Folder.3.70/mesquite/externalCommunication/lib/UsernamePasswordKeeper.class java/Mesquite_Folder.3.70/mesquite/jama/ java/Mesquite_Folder.3.70/mesquite/jama/explanation.txt java/Mesquite_Folder.3.70/mesquite/jama/aJamaIntro/ java/Mesquite_Folder.3.70/mesquite/jama/aJamaIntro/splash.gif java/Mesquite_Folder.3.70/mesquite/jama/aJamaIntro/index.html java/Mesquite_Folder.3.70/mesquite/jama/aJamaIntro/aJamaIntro.class java/Mesquite_Folder.3.70/mesquite/meristic/ java/Mesquite_Folder.3.70/mesquite/meristic/ManageMeristicChars/ java/Mesquite_Folder.3.70/mesquite/meristic/ManageMeristicChars/ManageMeristicChars.class java/Mesquite_Folder.3.70/mesquite/meristic/ParsimonyMeristicLinear/ java/Mesquite_Folder.3.70/mesquite/meristic/ParsimonyMeristicLinear/ParsimonyMeristicLinear.class java/Mesquite_Folder.3.70/mesquite/meristic/RandomFillMeristic/ java/Mesquite_Folder.3.70/mesquite/meristic/RandomFillMeristic/RandomFillMeristic.class java/Mesquite_Folder.3.70/mesquite/meristic/MerItemsEditInfo/ java/Mesquite_Folder.3.70/mesquite/meristic/MerItemsEditInfo/NameField$KListener.class java/Mesquite_Folder.3.70/mesquite/meristic/MerItemsEditInfo/MerItemsEditInfo.class java/Mesquite_Folder.3.70/mesquite/meristic/MerItemsEditInfo/ItemsPanel.class java/Mesquite_Folder.3.70/mesquite/meristic/MerItemsEditInfo/NameField.class java/Mesquite_Folder.3.70/mesquite/meristic/MerItemsEditInfo/ItemsField.class java/Mesquite_Folder.3.70/mesquite/meristic/lib/ java/Mesquite_Folder.3.70/mesquite/meristic/lib/RequiresExactlyMeristicData.class java/Mesquite_Folder.3.70/mesquite/meristic/lib/MeristicParsimonyModel.class java/Mesquite_Folder.3.70/mesquite/meristic/lib/MeristicData.class java/Mesquite_Folder.3.70/mesquite/meristic/lib/MeristicLinearParsModel.class java/Mesquite_Folder.3.70/mesquite/meristic/lib/MMeristicStates.class java/Mesquite_Folder.3.70/mesquite/meristic/lib/MeristicDistribution.class java/Mesquite_Folder.3.70/mesquite/meristic/lib/MMeristicHistory.class java/Mesquite_Folder.3.70/mesquite/meristic/lib/MMeristicEmbedded.class java/Mesquite_Folder.3.70/mesquite/meristic/lib/RequiresAnyMeristicData.class java/Mesquite_Folder.3.70/mesquite/meristic/lib/MeristicDataAlterer.class java/Mesquite_Folder.3.70/mesquite/meristic/lib/MeristicHistory.class java/Mesquite_Folder.3.70/mesquite/meristic/lib/MeristicStateTest.class java/Mesquite_Folder.3.70/mesquite/meristic/lib/MMeristicAdjustable.class java/Mesquite_Folder.3.70/mesquite/meristic/lib/MeristicStates.class java/Mesquite_Folder.3.70/mesquite/meristic/lib/MeristicAdjustable.class java/Mesquite_Folder.3.70/mesquite/meristic/lib/MeristicState.class java/Mesquite_Folder.3.70/mesquite/meristic/lib/MeristicEmbedded.class java/Mesquite_Folder.3.70/mesquite/meristic/lib/MMeristicDistribution.class java/Mesquite_Folder.3.70/mesquite/meristic/InitMeristicParsimony/ java/Mesquite_Folder.3.70/mesquite/meristic/InitMeristicParsimony/InitMeristicParsimony.class java/Mesquite_Folder.3.70/mesquite/meristic/aMeristicIntro/ java/Mesquite_Folder.3.70/mesquite/meristic/aMeristicIntro/aMeristicIntro.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ java/Mesquite_Folder.3.70/mesquite/charMatrices/SaveMatrixCopies/ java/Mesquite_Folder.3.70/mesquite/charMatrices/SaveMatrixCopies/SaveMatrixCopies.class java/Mesquite_Folder.3.70/mesquite/charMatrices/LogMatrixDetails/ java/Mesquite_Folder.3.70/mesquite/charMatrices/LogMatrixDetails/LogMatrixDetails.class java/Mesquite_Folder.3.70/mesquite/charMatrices/NumApplicableNonMissingMatrix/ java/Mesquite_Folder.3.70/mesquite/charMatrices/NumApplicableNonMissingMatrix/NumApplicableNonMissingMatrix.class java/Mesquite_Folder.3.70/mesquite/charMatrices/NumForCharWithChar/ java/Mesquite_Folder.3.70/mesquite/charMatrices/NumForCharWithChar/NumForCharWithChar.class java/Mesquite_Folder.3.70/mesquite/charMatrices/SortsInCharList/ java/Mesquite_Folder.3.70/mesquite/charMatrices/SortsInCharList/SortsInCharList.class java/Mesquite_Folder.3.70/mesquite/charMatrices/MatrixInfoTool/ java/Mesquite_Folder.3.70/mesquite/charMatrices/MatrixInfoTool/matrixInfo.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/MatrixInfoTool/32matrixInfo.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/MatrixInfoTool/MatrixInfoTool.class java/Mesquite_Folder.3.70/mesquite/charMatrices/MatrixInfoTool/64matrixInfo.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/SelectVariableCharacters/ java/Mesquite_Folder.3.70/mesquite/charMatrices/SelectVariableCharacters/SelectVariableCharacters.class java/Mesquite_Folder.3.70/mesquite/charMatrices/TaxonGroupColor/ java/Mesquite_Folder.3.70/mesquite/charMatrices/TaxonGroupColor/TaxonGroupColor.class java/Mesquite_Folder.3.70/mesquite/charMatrices/SelectDiffering/ java/Mesquite_Folder.3.70/mesquite/charMatrices/SelectDiffering/SelectDiffering.class java/Mesquite_Folder.3.70/mesquite/charMatrices/SaveMatricesFileProcessor/ java/Mesquite_Folder.3.70/mesquite/charMatrices/SaveMatricesFileProcessor/SaveMatricesFileProcessor.class java/Mesquite_Folder.3.70/mesquite/charMatrices/BasicDataWindowMaker/ java/Mesquite_Folder.3.70/mesquite/charMatrices/BasicDataWindowMaker/NoteField.class java/Mesquite_Folder.3.70/mesquite/charMatrices/BasicDataWindowMaker/BasicDataWindow.class java/Mesquite_Folder.3.70/mesquite/charMatrices/BasicDataWindowMaker/CellInfoPanel.class java/Mesquite_Folder.3.70/mesquite/charMatrices/BasicDataWindowMaker/BasicMatrixStatisticsPanel.class java/Mesquite_Folder.3.70/mesquite/charMatrices/BasicDataWindowMaker/CellAnnotation.class java/Mesquite_Folder.3.70/mesquite/charMatrices/BasicDataWindowMaker/SequenceLedge.class java/Mesquite_Folder.3.70/mesquite/charMatrices/BasicDataWindowMaker/64colorWand.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/BasicDataWindowMaker/NoteField$KListener.class java/Mesquite_Folder.3.70/mesquite/charMatrices/BasicDataWindowMaker/MatrixTable.class java/Mesquite_Folder.3.70/mesquite/charMatrices/BasicDataWindowMaker/32colorWand.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/BasicDataWindowMaker/FootnotePanel.class java/Mesquite_Folder.3.70/mesquite/charMatrices/BasicDataWindowMaker/BasicDataWindowMaker.class java/Mesquite_Folder.3.70/mesquite/charMatrices/BasicDataWindowMaker/ColorLegend.class java/Mesquite_Folder.3.70/mesquite/charMatrices/BasicDataWindowMaker/colorWand.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/BasicDataWindowMaker/MatrixInfoPanel.class java/Mesquite_Folder.3.70/mesquite/charMatrices/BasicDataWindowMaker/birdsEye.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/SprinkleMissing/ java/Mesquite_Folder.3.70/mesquite/charMatrices/SprinkleMissing/SprinkleMissing.class java/Mesquite_Folder.3.70/mesquite/charMatrices/NumMatricesWithDataForTaxon/ java/Mesquite_Folder.3.70/mesquite/charMatrices/NumMatricesWithDataForTaxon/NumMatricesWithDataForTaxon.class java/Mesquite_Folder.3.70/mesquite/charMatrices/SortTaxa/ java/Mesquite_Folder.3.70/mesquite/charMatrices/SortTaxa/64taxaSort.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/SortTaxa/revTaxaSort.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/SortTaxa/taxaSort.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/SortTaxa/64revTaxaSort.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/SortTaxa/SortTaxa.class java/Mesquite_Folder.3.70/mesquite/charMatrices/SortTaxa/32taxaSort.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/SortTaxa/32revTaxaSort.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/ColorByMatchToFirstTaxon/ java/Mesquite_Folder.3.70/mesquite/charMatrices/ColorByMatchToFirstTaxon/ColorByMatchToFirstTaxon.class java/Mesquite_Folder.3.70/mesquite/charMatrices/AnnotPanel/ java/Mesquite_Folder.3.70/mesquite/charMatrices/AnnotPanel/AnnotPanel.class java/Mesquite_Folder.3.70/mesquite/charMatrices/AnnotPanel/annot.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/CharMatrixCoordIndep/ java/Mesquite_Folder.3.70/mesquite/charMatrices/CharMatrixCoordIndep/CharMatrixCoordIndep.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ColorByExcluded/ java/Mesquite_Folder.3.70/mesquite/charMatrices/ColorByExcluded/ColorByExcluded.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ExtendSelectionToWholeChars/ java/Mesquite_Folder.3.70/mesquite/charMatrices/ExtendSelectionToWholeChars/ExtendSelectionToWholeChars.class java/Mesquite_Folder.3.70/mesquite/charMatrices/SortsManagerChar/ java/Mesquite_Folder.3.70/mesquite/charMatrices/SortsManagerChar/SortingNexusCommandTest.class java/Mesquite_Folder.3.70/mesquite/charMatrices/SortsManagerChar/SortsManagerChar.class java/Mesquite_Folder.3.70/mesquite/charMatrices/Fill/ java/Mesquite_Folder.3.70/mesquite/charMatrices/Fill/Fill.class java/Mesquite_Folder.3.70/mesquite/charMatrices/AddDeleteData/ java/Mesquite_Folder.3.70/mesquite/charMatrices/AddDeleteData/32addChars.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/AddDeleteData/AddDeleteData.class java/Mesquite_Folder.3.70/mesquite/charMatrices/AddDeleteData/64addTaxa.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/AddDeleteData/32addTaxa.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/AddDeleteData/64addChars.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/AddDeleteData/addChars.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/AddDeleteData/addTaxa.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageDATAblock/ java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageDATAblock/ManageDATAblock.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageDATAblock/DATABlockTest.class java/Mesquite_Folder.3.70/mesquite/charMatrices/AddCharsFromSource/ java/Mesquite_Folder.3.70/mesquite/charMatrices/AddCharsFromSource/AddCharsFromSource.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ReshuffleWithinTaxa/ java/Mesquite_Folder.3.70/mesquite/charMatrices/ReshuffleWithinTaxa/ReshuffleWithinTaxa.class java/Mesquite_Folder.3.70/mesquite/charMatrices/AlteredMatrix/ java/Mesquite_Folder.3.70/mesquite/charMatrices/AlteredMatrix/AlteredMatrix.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageCharInclusion/ java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageCharInclusion/CharsetNexusCommandTest.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageCharInclusion/ManageCharInclusion.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ColorByCharValue/ java/Mesquite_Folder.3.70/mesquite/charMatrices/ColorByCharValue/CbNCompatibilityTest.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ColorByCharValue/ColorByCharValue.class java/Mesquite_Folder.3.70/mesquite/charMatrices/CompareMatrices/ java/Mesquite_Folder.3.70/mesquite/charMatrices/CompareMatrices/CompareMatrices.class java/Mesquite_Folder.3.70/mesquite/charMatrices/StoredMatrices/ java/Mesquite_Folder.3.70/mesquite/charMatrices/StoredMatrices/CSMCompatibilityTest.class java/Mesquite_Folder.3.70/mesquite/charMatrices/StoredMatrices/StoredMatrices.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageCharacters/ java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageCharacters/ManageCharacters.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageCharacters/CharactersBlockTest.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageCharacters/CHARNexusCommandTest.class java/Mesquite_Folder.3.70/mesquite/charMatrices/QuickKeySelector/ java/Mesquite_Folder.3.70/mesquite/charMatrices/QuickKeySelector/quickKeySelector.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/QuickKeySelector/32quickKeySelector copy.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/QuickKeySelector/quickKeyLeft.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/QuickKeySelector/64quickKeyDown.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/QuickKeySelector/QuickKeySelector.class java/Mesquite_Folder.3.70/mesquite/charMatrices/QuickKeySelector/quickKeyRight.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/QuickKeySelector/32quickKeyDown.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/QuickKeySelector/64quickKeyRight.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/QuickKeySelector/64quickKeyLeft.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/QuickKeySelector/quickKeyDown.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/QuickKeySelector/64quickKeySelector.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/QuickKeySelector/quickKeySelector copy.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/QuickKeySelector/32quickKeySelector.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/QuickKeySelector/32quickKeyLeft.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/QuickKeySelector/32quickKeyRight.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/QuickKeySelector/64quickKeySelector copy.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/explanation.txt java/Mesquite_Folder.3.70/mesquite/charMatrices/SearchSelect/ java/Mesquite_Folder.3.70/mesquite/charMatrices/SearchSelect/SearchSelect.class java/Mesquite_Folder.3.70/mesquite/charMatrices/RandomFillWithMissing/ java/Mesquite_Folder.3.70/mesquite/charMatrices/RandomFillWithMissing/RandomFillWithMissing.class java/Mesquite_Folder.3.70/mesquite/charMatrices/CondensedPatternMatrix/ java/Mesquite_Folder.3.70/mesquite/charMatrices/CondensedPatternMatrix/CondensedPatternMatrix.class java/Mesquite_Folder.3.70/mesquite/charMatrices/BootstrapResample/ java/Mesquite_Folder.3.70/mesquite/charMatrices/BootstrapResample/BootstrapResample.class java/Mesquite_Folder.3.70/mesquite/charMatrices/SelectSame/ java/Mesquite_Folder.3.70/mesquite/charMatrices/SelectSame/SelectSame.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ReshuffleMatrixByPart/ java/Mesquite_Folder.3.70/mesquite/charMatrices/ReshuffleMatrixByPart/ReshuffleMatrixByPart.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ShuffleStates/ java/Mesquite_Folder.3.70/mesquite/charMatrices/ShuffleStates/ShuffleStates.class java/Mesquite_Folder.3.70/mesquite/charMatrices/RecodeCateg/ java/Mesquite_Folder.3.70/mesquite/charMatrices/RecodeCateg/RecodeCateg.class java/Mesquite_Folder.3.70/mesquite/charMatrices/RecodeCateg/RecodeDialog.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ConcatRespMatrices/ java/Mesquite_Folder.3.70/mesquite/charMatrices/ConcatRespMatrices/ConcatRespMatrices.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ReshuffleWTaxaByPart/ java/Mesquite_Folder.3.70/mesquite/charMatrices/ReshuffleWTaxaByPart/ReshuffleWTaxaByPart.class java/Mesquite_Folder.3.70/mesquite/charMatrices/BooleanForCharInfoStrip/ java/Mesquite_Folder.3.70/mesquite/charMatrices/BooleanForCharInfoStrip/BooleanForCharInfoStrip.class java/Mesquite_Folder.3.70/mesquite/charMatrices/RarefyMatrix/ java/Mesquite_Folder.3.70/mesquite/charMatrices/RarefyMatrix/RarefyMatrix.class java/Mesquite_Folder.3.70/mesquite/charMatrices/SelSummaryStrip/ java/Mesquite_Folder.3.70/mesquite/charMatrices/SelSummaryStrip/SelSummaryStrip.class java/Mesquite_Folder.3.70/mesquite/charMatrices/SelSummaryStrip/Ledge.class java/Mesquite_Folder.3.70/mesquite/charMatrices/NoColor/ java/Mesquite_Folder.3.70/mesquite/charMatrices/NoColor/NoColor.class java/Mesquite_Folder.3.70/mesquite/charMatrices/IncludedCharBoolean/ java/Mesquite_Folder.3.70/mesquite/charMatrices/IncludedCharBoolean/IncludedCharBoolean.class java/Mesquite_Folder.3.70/mesquite/charMatrices/MatrixSelection/ java/Mesquite_Folder.3.70/mesquite/charMatrices/MatrixSelection/MatrixSelection.class java/Mesquite_Folder.3.70/mesquite/charMatrices/AlterMatrixAsUtility/ java/Mesquite_Folder.3.70/mesquite/charMatrices/AlterMatrixAsUtility/AlterMatrixAsUtility.class java/Mesquite_Folder.3.70/mesquite/charMatrices/PopupStateSelector/ java/Mesquite_Folder.3.70/mesquite/charMatrices/PopupStateSelector/PopupStateSelector.class java/Mesquite_Folder.3.70/mesquite/charMatrices/PopupStateSelector/popUpStateSelector.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/PopupStateSelector/32popUpStateSelector.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/PopupStateSelector/64popUpStateSelector.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/ColorByFootnote/ java/Mesquite_Folder.3.70/mesquite/charMatrices/ColorByFootnote/ColorByFootnote.class java/Mesquite_Folder.3.70/mesquite/charMatrices/CharGroupColor/ java/Mesquite_Folder.3.70/mesquite/charMatrices/CharGroupColor/CharGroupColor.class java/Mesquite_Folder.3.70/mesquite/charMatrices/CompileProcessedMatrices/ java/Mesquite_Folder.3.70/mesquite/charMatrices/CompileProcessedMatrices/CompileProcessedMatrices.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageCodonsBlock/ java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageCodonsBlock/ManageCodonsBlock.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageCodonsBlock/CodonsBlockTest.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageCodonsBlock/CodonsBlock.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageCharModels/ java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageCharModels/ModelNamesLister.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageCharModels/CharModelsNexusCmdTest.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageCharModels/ForeignModel.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageCharModels/ManageCharModels.class java/Mesquite_Folder.3.70/mesquite/charMatrices/WandTaxon/ java/Mesquite_Folder.3.70/mesquite/charMatrices/WandTaxon/64taxaWand.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/WandTaxon/WandTaxon.class java/Mesquite_Folder.3.70/mesquite/charMatrices/WandTaxon/taxaWand.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/WandTaxon/32taxaWand.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/DataUtilityFileProcessor/ java/Mesquite_Folder.3.70/mesquite/charMatrices/DataUtilityFileProcessor/DataUtilityFileProcessor.class java/Mesquite_Folder.3.70/mesquite/charMatrices/AlterAllMatrices/ java/Mesquite_Folder.3.70/mesquite/charMatrices/AlterAllMatrices/AlterAllMatrices.class java/Mesquite_Folder.3.70/mesquite/charMatrices/NumApplicableNonMissing/ java/Mesquite_Folder.3.70/mesquite/charMatrices/NumApplicableNonMissing/NumApplicableNonMissing.class java/Mesquite_Folder.3.70/mesquite/charMatrices/NumDataCellsStrip/ java/Mesquite_Folder.3.70/mesquite/charMatrices/NumDataCellsStrip/NumDataCellsStrip.class java/Mesquite_Folder.3.70/mesquite/charMatrices/NumTaxaWithDataInMatrix/ java/Mesquite_Folder.3.70/mesquite/charMatrices/NumTaxaWithDataInMatrix/NumTaxaWithDataInMatrix.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ReshuffleCharacter/ java/Mesquite_Folder.3.70/mesquite/charMatrices/ReshuffleCharacter/ReshuffleCharacter.class java/Mesquite_Folder.3.70/mesquite/charMatrices/DataPainter/ java/Mesquite_Folder.3.70/mesquite/charMatrices/DataPainter/DataPainter.class java/Mesquite_Folder.3.70/mesquite/charMatrices/RandomModRespMatrices/ java/Mesquite_Folder.3.70/mesquite/charMatrices/RandomModRespMatrices/RandomModRespMatrices.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ImposeIndelPattern/ java/Mesquite_Folder.3.70/mesquite/charMatrices/ImposeIndelPattern/ImposeIndelPattern.class java/Mesquite_Folder.3.70/mesquite/charMatrices/SelectDelimiting/ java/Mesquite_Folder.3.70/mesquite/charMatrices/SelectDelimiting/SelectDelimiting.class java/Mesquite_Folder.3.70/mesquite/charMatrices/CharSrcCoordIndep/ java/Mesquite_Folder.3.70/mesquite/charMatrices/CharSrcCoordIndep/CharSrcCoordIndep.class java/Mesquite_Folder.3.70/mesquite/charMatrices/DifferenceInNumsForChar/ java/Mesquite_Folder.3.70/mesquite/charMatrices/DifferenceInNumsForChar/DifferenceInNumsForChar.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageAssumptionsBlock/ java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageAssumptionsBlock/ManageAssumptionsBlock.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageAssumptionsBlock/AssumptionsBlockTest.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageAssumptionsBlock/AssumptionsBlock.class java/Mesquite_Folder.3.70/mesquite/charMatrices/CharSelCoordinator/ java/Mesquite_Folder.3.70/mesquite/charMatrices/CharSelCoordinator/CharSelCoordinator.class java/Mesquite_Folder.3.70/mesquite/charMatrices/lib/ java/Mesquite_Folder.3.70/mesquite/charMatrices/lib/SourceModifiedMatrix.class java/Mesquite_Folder.3.70/mesquite/charMatrices/lib/DataWindow.class java/Mesquite_Folder.3.70/mesquite/charMatrices/lib/MatrixInfoExtraPanel.class java/Mesquite_Folder.3.70/mesquite/charMatrices/lib/SourceModRespectiveMatrix.class java/Mesquite_Folder.3.70/mesquite/charMatrices/lib/RandomMatrixModifier.class java/Mesquite_Folder.3.70/mesquite/charMatrices/PercentMissing/ java/Mesquite_Folder.3.70/mesquite/charMatrices/PercentMissing/PercentMissing.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageCharPartitions/ java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageCharPartitions/PartitionNexusCommandTest.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageCharPartitions/ManageCharPartitions.class java/Mesquite_Folder.3.70/mesquite/charMatrices/BasicDataWindowCoord/ java/Mesquite_Folder.3.70/mesquite/charMatrices/BasicDataWindowCoord/BasicDataWindowCoord.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ReshuffleMatrix/ java/Mesquite_Folder.3.70/mesquite/charMatrices/ReshuffleMatrix/ReshuffleMatrix.class java/Mesquite_Folder.3.70/mesquite/charMatrices/SelectCharacterRanges/ java/Mesquite_Folder.3.70/mesquite/charMatrices/SelectCharacterRanges/SelectCharacterRanges.class java/Mesquite_Folder.3.70/mesquite/charMatrices/NumSelTaxaWithDataInMatrix/ java/Mesquite_Folder.3.70/mesquite/charMatrices/NumSelTaxaWithDataInMatrix/NumSelTaxaWithDataInMatrix.class java/Mesquite_Folder.3.70/mesquite/charMatrices/MatrixFromClipboard/ java/Mesquite_Folder.3.70/mesquite/charMatrices/MatrixFromClipboard/MatrixFromClipboard.class java/Mesquite_Folder.3.70/mesquite/charMatrices/MatrixFromClipboard/MFCDialog.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ColorByState/ java/Mesquite_Folder.3.70/mesquite/charMatrices/ColorByState/ColorByState.class java/Mesquite_Folder.3.70/mesquite/charMatrices/aCharMatricesIntro/ java/Mesquite_Folder.3.70/mesquite/charMatrices/aCharMatricesIntro/aCharMatricesIntro.class java/Mesquite_Folder.3.70/mesquite/charMatrices/SelectSameVert/ java/Mesquite_Folder.3.70/mesquite/charMatrices/SelectSameVert/SelectSameVert.class java/Mesquite_Folder.3.70/mesquite/charMatrices/WandChar/ java/Mesquite_Folder.3.70/mesquite/charMatrices/WandChar/WandChar.class java/Mesquite_Folder.3.70/mesquite/charMatrices/WandChar/32charWand.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/WandChar/charWand.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/WandChar/64charWand.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/SelectRndCharacters/ java/Mesquite_Folder.3.70/mesquite/charMatrices/SelectRndCharacters/SelectRndCharacters.class java/Mesquite_Folder.3.70/mesquite/charMatrices/CharMatrixCoordObed/ java/Mesquite_Folder.3.70/mesquite/charMatrices/CharMatrixCoordObed/CharMatrixCoordObed.class java/Mesquite_Folder.3.70/mesquite/charMatrices/SortChar/ java/Mesquite_Folder.3.70/mesquite/charMatrices/SortChar/32revCharSort.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/SortChar/32charSort.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/SortChar/charSort.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/SortChar/64revCharSort.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/SortChar/SortChar.class java/Mesquite_Folder.3.70/mesquite/charMatrices/SortChar/64charSort.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/SortChar/revCharSort.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/RandomModifMatrix/ java/Mesquite_Folder.3.70/mesquite/charMatrices/RandomModifMatrix/RandomModifMatrix.class java/Mesquite_Folder.3.70/mesquite/charMatrices/WandBlock/ java/Mesquite_Folder.3.70/mesquite/charMatrices/WandBlock/wandBlock.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/WandBlock/32wandBlock.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/WandBlock/64wandBlock.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/WandBlock/WandBlock.class java/Mesquite_Folder.3.70/mesquite/charMatrices/NumIncludedMatrix/ java/Mesquite_Folder.3.70/mesquite/charMatrices/NumIncludedMatrix/NumIncludedMatrix.class java/Mesquite_Folder.3.70/mesquite/charMatrices/StoredCharacters/ java/Mesquite_Folder.3.70/mesquite/charMatrices/StoredCharacters/CSMCompatibilityTest.class java/Mesquite_Folder.3.70/mesquite/charMatrices/StoredCharacters/StoredCharacters.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageCharWeights/ java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageCharWeights/ManageCharWeights.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageCharWeights/WtsetNexusCommandTest.class java/Mesquite_Folder.3.70/mesquite/charMatrices/SelectCharsWithProbP/ java/Mesquite_Folder.3.70/mesquite/charMatrices/SelectCharsWithProbP/SelectCharsWithProbP.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageCharsets/ java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageCharsets/CharsetNexusCommandTest.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageCharsets/ManageCharsets.class java/Mesquite_Folder.3.70/mesquite/charMatrices/NumberForMatricesFP/ java/Mesquite_Folder.3.70/mesquite/charMatrices/NumberForMatricesFP/NumberForMatricesFP.class java/Mesquite_Folder.3.70/mesquite/charMatrices/SelectMatchingTaxa/ java/Mesquite_Folder.3.70/mesquite/charMatrices/SelectMatchingTaxa/SelectMatchingTaxa.class java/Mesquite_Folder.3.70/mesquite/charMatrices/AlterData/ java/Mesquite_Folder.3.70/mesquite/charMatrices/AlterData/OtherAltererQualificationsTest.class java/Mesquite_Folder.3.70/mesquite/charMatrices/AlterData/AlterData.class java/Mesquite_Folder.3.70/mesquite/charMatrices/CharReferenceStrip/ java/Mesquite_Folder.3.70/mesquite/charMatrices/CharReferenceStrip/Ledge.class java/Mesquite_Folder.3.70/mesquite/charMatrices/CharReferenceStrip/CharReferenceStrip.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ColorTInfo/ java/Mesquite_Folder.3.70/mesquite/charMatrices/ColorTInfo/ColorTInfo.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ColorByTaxonValue/ java/Mesquite_Folder.3.70/mesquite/charMatrices/ColorByTaxonValue/ColorByTaxonValue.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ConcatenateMatrices/ java/Mesquite_Folder.3.70/mesquite/charMatrices/ConcatenateMatrices/ConcatenateMatrices.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ColorCells/ java/Mesquite_Folder.3.70/mesquite/charMatrices/ColorCells/color.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/ColorCells/ColorCells.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ColorCells/64color.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/ColorCells/32color.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/Wand/ java/Mesquite_Folder.3.70/mesquite/charMatrices/Wand/32magicWand.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/Wand/Wand.class java/Mesquite_Folder.3.70/mesquite/charMatrices/Wand/magicWand.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/Wand/64magicWand.gif java/Mesquite_Folder.3.70/mesquite/charMatrices/CharSrcCoordObed/ java/Mesquite_Folder.3.70/mesquite/charMatrices/CharSrcCoordObed/CharSrcCoordObed.class java/Mesquite_Folder.3.70/mesquite/charMatrices/PercentGaps/ java/Mesquite_Folder.3.70/mesquite/charMatrices/PercentGaps/PercentGaps.class java/Mesquite_Folder.3.70/mesquite/charMatrices/SearchData/ java/Mesquite_Folder.3.70/mesquite/charMatrices/SearchData/SearchData.class java/Mesquite_Folder.3.70/mesquite/charMatrices/RandomFillCateg/ java/Mesquite_Folder.3.70/mesquite/charMatrices/RandomFillCateg/RandomFillCateg.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageCodonPositions/ java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageCodonPositions/ManageCodonPositions.class java/Mesquite_Folder.3.70/mesquite/charMatrices/ManageCodonPositions/PosNexusCommandTest.class java/Mesquite_Folder.3.70/mesquite/io/ java/Mesquite_Folder.3.70/mesquite/io/InterpretMrBayesConTreeFile/ java/Mesquite_Folder.3.70/mesquite/io/InterpretMrBayesConTreeFile/InterpretMrBayesConTreeFile.class java/Mesquite_Folder.3.70/mesquite/io/ExportPartitionFinderProtein/ java/Mesquite_Folder.3.70/mesquite/io/ExportPartitionFinderProtein/ExportPartitionFinderProtein.class java/Mesquite_Folder.3.70/mesquite/io/InterpretPhylipDNA/ java/Mesquite_Folder.3.70/mesquite/io/InterpretPhylipDNA/InterpretPhylipDNA.class java/Mesquite_Folder.3.70/mesquite/io/InterpretClustalProtein/ java/Mesquite_Folder.3.70/mesquite/io/InterpretClustalProtein/InterpretClustalProtein.class java/Mesquite_Folder.3.70/mesquite/io/ExportFusedPhylip/ java/Mesquite_Folder.3.70/mesquite/io/ExportFusedPhylip/ExportFusedPhylip.class java/Mesquite_Folder.3.70/mesquite/io/ExportCharStateInfo/ java/Mesquite_Folder.3.70/mesquite/io/ExportCharStateInfo/ExportCharStateInfo.class java/Mesquite_Folder.3.70/mesquite/io/InterpretPhylipProtein/ java/Mesquite_Folder.3.70/mesquite/io/InterpretPhylipProtein/InterpretPhylipProtein.class java/Mesquite_Folder.3.70/mesquite/io/InterpretTNT/ java/Mesquite_Folder.3.70/mesquite/io/InterpretTNT/InterpretTNT.class java/Mesquite_Folder.3.70/mesquite/io/InterpretSimpleCont/ java/Mesquite_Folder.3.70/mesquite/io/InterpretSimpleCont/InterpretSimpleCont.class java/Mesquite_Folder.3.70/mesquite/io/ExportDescriptions/ java/Mesquite_Folder.3.70/mesquite/io/ExportDescriptions/ExportDescriptions.class java/Mesquite_Folder.3.70/mesquite/io/InterpretSimpleDNA/ java/Mesquite_Folder.3.70/mesquite/io/InterpretSimpleDNA/InterpretSimpleDNA.class java/Mesquite_Folder.3.70/mesquite/io/xExportConservativeNexus/ java/Mesquite_Folder.3.70/mesquite/io/xExportConservativeNexus/xExportConservativeNexus.class java/Mesquite_Folder.3.70/mesquite/io/InterpretTabbedCat/ java/Mesquite_Folder.3.70/mesquite/io/InterpretTabbedCat/InterpretTabbedCat.class java/Mesquite_Folder.3.70/mesquite/io/explanation.txt java/Mesquite_Folder.3.70/mesquite/io/InterpretSimpleProtein/ java/Mesquite_Folder.3.70/mesquite/io/InterpretSimpleProtein/InterpretSimpleProtein.class java/Mesquite_Folder.3.70/mesquite/io/InterpretNBRFProtein/ java/Mesquite_Folder.3.70/mesquite/io/InterpretNBRFProtein/InterpretNBRFProtein.class java/Mesquite_Folder.3.70/mesquite/io/InterpretGenBankDNA/ java/Mesquite_Folder.3.70/mesquite/io/InterpretGenBankDNA/InterpretGenBankDNA.class java/Mesquite_Folder.3.70/mesquite/io/InterpretFastaDNA/ java/Mesquite_Folder.3.70/mesquite/io/InterpretFastaDNA/InterpretFastaDNA.class java/Mesquite_Folder.3.70/mesquite/io/ExportNEXUSTreeFile/ java/Mesquite_Folder.3.70/mesquite/io/ExportNEXUSTreeFile/ExportNEXUSTreeFile.class java/Mesquite_Folder.3.70/mesquite/io/ExportTreeSourceToNEXUS/ java/Mesquite_Folder.3.70/mesquite/io/ExportTreeSourceToNEXUS/ExportTreeSourceToNEXUS.class java/Mesquite_Folder.3.70/mesquite/io/InterpretTabbedConts/ java/Mesquite_Folder.3.70/mesquite/io/InterpretTabbedConts/InterpretTabbedConts.class java/Mesquite_Folder.3.70/mesquite/io/InterpretPOYDNA/ java/Mesquite_Folder.3.70/mesquite/io/InterpretPOYDNA/InterpretPOYDNA.class java/Mesquite_Folder.3.70/mesquite/io/InterpretSimpleCat/ java/Mesquite_Folder.3.70/mesquite/io/InterpretSimpleCat/InterpretSimpleCat.class java/Mesquite_Folder.3.70/mesquite/io/InterpretFastaProtein/ java/Mesquite_Folder.3.70/mesquite/io/InterpretFastaProtein/InterpretFastaProtein.class java/Mesquite_Folder.3.70/mesquite/io/xExportPartitionsNEXUS/ java/Mesquite_Folder.3.70/mesquite/io/xExportPartitionsNEXUS/xExportPartitionsNEXUS.class java/Mesquite_Folder.3.70/mesquite/io/aIOIntro/ java/Mesquite_Folder.3.70/mesquite/io/aIOIntro/aIOIntro.class java/Mesquite_Folder.3.70/mesquite/io/lib/ java/Mesquite_Folder.3.70/mesquite/io/lib/HennigNonaCommand.class java/Mesquite_Folder.3.70/mesquite/io/lib/InterpretClustal.class java/Mesquite_Folder.3.70/mesquite/io/lib/HennigDREAD.class java/Mesquite_Folder.3.70/mesquite/io/lib/InterpretHennig86Base.class java/Mesquite_Folder.3.70/mesquite/io/lib/HennigNSTATES.class java/Mesquite_Folder.3.70/mesquite/io/lib/HennigCCODE.class java/Mesquite_Folder.3.70/mesquite/io/lib/PartitionFinderDialog.class java/Mesquite_Folder.3.70/mesquite/io/lib/InterpretNBRF.class java/Mesquite_Folder.3.70/mesquite/io/lib/InterpretSimple.class java/Mesquite_Folder.3.70/mesquite/io/lib/HennigCNAMES.class java/Mesquite_Folder.3.70/mesquite/io/lib/PhylipExporterDialog.class java/Mesquite_Folder.3.70/mesquite/io/lib/HennigXREAD.class java/Mesquite_Folder.3.70/mesquite/io/lib/HennigCOMMENTS.class java/Mesquite_Folder.3.70/mesquite/io/lib/InterpretPhylipTrees.class java/Mesquite_Folder.3.70/mesquite/io/lib/HennigQUOTE.class java/Mesquite_Folder.3.70/mesquite/io/lib/HennigTREAD.class java/Mesquite_Folder.3.70/mesquite/io/lib/ExportPartitionFinder.class java/Mesquite_Folder.3.70/mesquite/io/lib/HennigXDREAD.class java/Mesquite_Folder.3.70/mesquite/io/lib/InterpretPhylip.class java/Mesquite_Folder.3.70/mesquite/io/lib/InterpretFasta.class java/Mesquite_Folder.3.70/mesquite/io/lib/IOUtil.class java/Mesquite_Folder.3.70/mesquite/io/lib/InterpretGenBank.class java/Mesquite_Folder.3.70/mesquite/io/InterpretGenBankProt/ java/Mesquite_Folder.3.70/mesquite/io/InterpretGenBankProt/InterpretGenBankProt.class java/Mesquite_Folder.3.70/mesquite/io/InterpretClustalDNA/ java/Mesquite_Folder.3.70/mesquite/io/InterpretClustalDNA/InterpretClustalDNA.class java/Mesquite_Folder.3.70/mesquite/io/InterpretSimpleGeog/ java/Mesquite_Folder.3.70/mesquite/io/InterpretSimpleGeog/InterpretSimpleGeog.class java/Mesquite_Folder.3.70/mesquite/io/InterpretPhylipCat/ java/Mesquite_Folder.3.70/mesquite/io/InterpretPhylipCat/InterpretPhylipCat.class java/Mesquite_Folder.3.70/mesquite/io/InterpretNBRFDNA/ java/Mesquite_Folder.3.70/mesquite/io/InterpretNBRFDNA/InterpretNBRFDNA.class java/Mesquite_Folder.3.70/mesquite/io/xExportSimpleNexus/ java/Mesquite_Folder.3.70/mesquite/io/xExportSimpleNexus/xExportSimpleNexus.class java/Mesquite_Folder.3.70/mesquite/io/InterpretNonaHennig/ java/Mesquite_Folder.3.70/mesquite/io/InterpretNonaHennig/InterpretNonaHennig.class java/Mesquite_Folder.3.70/mesquite/io/ExportPartitionFinderDNA/ java/Mesquite_Folder.3.70/mesquite/io/ExportPartitionFinderDNA/ExportPartitionFinderDNA.class java/Mesquite_Folder.3.70/mesquite/io/ExportFusedMatrixNEXUS/ java/Mesquite_Folder.3.70/mesquite/io/ExportFusedMatrixNEXUS/ExportFusedMatrixNEXUS.class java/Mesquite_Folder.3.70/mesquite/io/InterpretPhylipTreesBasic/ java/Mesquite_Folder.3.70/mesquite/io/InterpretPhylipTreesBasic/InterpretPhylipTreesBasic.class java/Mesquite_Folder.3.70/mesquite/distance/ java/Mesquite_Folder.3.70/mesquite/distance/PatristicDistance/ java/Mesquite_Folder.3.70/mesquite/distance/PatristicDistance/PatristicDistance.class java/Mesquite_Folder.3.70/mesquite/distance/PatristicDistance/PatristicTD.class java/Mesquite_Folder.3.70/mesquite/distance/NodeCountDist/ java/Mesquite_Folder.3.70/mesquite/distance/NodeCountDist/NodeCountDist$NodeCountTD.class java/Mesquite_Folder.3.70/mesquite/distance/NodeCountDist/NodeCountDist.class java/Mesquite_Folder.3.70/mesquite/distance/K2PDistance/ java/Mesquite_Folder.3.70/mesquite/distance/K2PDistance/K2PDistance.class java/Mesquite_Folder.3.70/mesquite/distance/K2PDistance/K2PTD.class java/Mesquite_Folder.3.70/mesquite/distance/TaxonPairDistance/ java/Mesquite_Folder.3.70/mesquite/distance/TaxonPairDistance/TaxonPairDistance.class java/Mesquite_Folder.3.70/mesquite/distance/AbsoluteDistance/ java/Mesquite_Folder.3.70/mesquite/distance/AbsoluteDistance/AbsoluteDistance.class java/Mesquite_Folder.3.70/mesquite/distance/AbsoluteDistance/SimpleTD.class java/Mesquite_Folder.3.70/mesquite/distance/F84Distance/ java/Mesquite_Folder.3.70/mesquite/distance/F84Distance/F84TD.class java/Mesquite_Folder.3.70/mesquite/distance/F84Distance/F84Distance.class java/Mesquite_Folder.3.70/mesquite/distance/ShowDistance/ java/Mesquite_Folder.3.70/mesquite/distance/ShowDistance/ShowDistance.class java/Mesquite_Folder.3.70/mesquite/distance/explanation.txt java/Mesquite_Folder.3.70/mesquite/distance/TaxaDistFromMatrixSrc/ java/Mesquite_Folder.3.70/mesquite/distance/TaxaDistFromMatrixSrc/TaxaDistFromMatrixSrc.class java/Mesquite_Folder.3.70/mesquite/distance/UncorrectedDistance/ java/Mesquite_Folder.3.70/mesquite/distance/UncorrectedDistance/UncorrectedDistance.class java/Mesquite_Folder.3.70/mesquite/distance/UncorrectedDistance/SimpleTD.class java/Mesquite_Folder.3.70/mesquite/distance/DistanceContainedTaxa/ java/Mesquite_Folder.3.70/mesquite/distance/DistanceContainedTaxa/DistanceContainedTaxa.class java/Mesquite_Folder.3.70/mesquite/distance/DistanceContainedTaxa/ContainedDistances.class java/Mesquite_Folder.3.70/mesquite/distance/PDistance/ java/Mesquite_Folder.3.70/mesquite/distance/PDistance/PDistance.class java/Mesquite_Folder.3.70/mesquite/distance/PDistance/PTD.class java/Mesquite_Folder.3.70/mesquite/distance/SingleLinkage/ java/Mesquite_Folder.3.70/mesquite/distance/SingleLinkage/SingleLinkage.class java/Mesquite_Folder.3.70/mesquite/distance/aDistanceIntro/ java/Mesquite_Folder.3.70/mesquite/distance/aDistanceIntro/aDistanceIntro.class java/Mesquite_Folder.3.70/mesquite/distance/ExportTaxaDistances/ java/Mesquite_Folder.3.70/mesquite/distance/ExportTaxaDistances/ExportTaxaDistances.class java/Mesquite_Folder.3.70/mesquite/distance/Notes/ java/Mesquite_Folder.3.70/mesquite/distance/Notes/Distance Notes java/Mesquite_Folder.3.70/mesquite/distance/UPGMA/ java/Mesquite_Folder.3.70/mesquite/distance/UPGMA/UPGMA.class java/Mesquite_Folder.3.70/mesquite/distance/TaxonDistance/ java/Mesquite_Folder.3.70/mesquite/distance/TaxonDistance/TaxonDistance.class java/Mesquite_Folder.3.70/mesquite/distance/ExportTaxaDistancesByGroup/ java/Mesquite_Folder.3.70/mesquite/distance/ExportTaxaDistancesByGroup/ExportTaxaDistancesByGroup.class java/Mesquite_Folder.3.70/mesquite/distance/SharedHistoryDistance/ java/Mesquite_Folder.3.70/mesquite/distance/SharedHistoryDistance/SharedHistoryDistance.class java/Mesquite_Folder.3.70/mesquite/distance/SharedHistoryDistance/SharedHistoryDistance$SharedHistoryTD.class java/Mesquite_Folder.3.70/mesquite/distance/JukesCantorDistance/ java/Mesquite_Folder.3.70/mesquite/distance/JukesCantorDistance/JukesCantorTD.class java/Mesquite_Folder.3.70/mesquite/distance/JukesCantorDistance/JukesCantorDistance.class java/Mesquite_Folder.3.70/mesquite/distance/lib/ java/Mesquite_Folder.3.70/mesquite/distance/lib/GeoTaxaDistance.class java/Mesquite_Folder.3.70/mesquite/distance/lib/IncTaxaDistanceSource.class java/Mesquite_Folder.3.70/mesquite/distance/lib/GeoTaxaDistFromMatrix.class java/Mesquite_Folder.3.70/mesquite/distance/lib/TaxaDistance.class java/Mesquite_Folder.3.70/mesquite/distance/lib/TreeClusterer.class java/Mesquite_Folder.3.70/mesquite/distance/lib/DNATaxaDistFromMatrixFreq.class java/Mesquite_Folder.3.70/mesquite/distance/lib/MolecularTaxaDistance.class java/Mesquite_Folder.3.70/mesquite/distance/lib/PairsWindow.class java/Mesquite_Folder.3.70/mesquite/distance/lib/TaxaDistFromMatrix.class java/Mesquite_Folder.3.70/mesquite/distance/lib/PairsChartMessages.class java/Mesquite_Folder.3.70/mesquite/distance/lib/TaxaDistanceSource.class java/Mesquite_Folder.3.70/mesquite/distance/lib/DNATaxaDistance.class java/Mesquite_Folder.3.70/mesquite/distance/lib/DNATaxaDistFromMatrix.class java/Mesquite_Folder.3.70/mesquite/distance/SharedProportionalDistance/ java/Mesquite_Folder.3.70/mesquite/distance/SharedProportionalDistance/SharedProportionalDistance$SharedProportionTD.class java/Mesquite_Folder.3.70/mesquite/distance/SharedProportionalDistance/SharedProportionalDistance.class java/Mesquite_Folder.3.70/mesquite/distance/ClusterAnalysis/ java/Mesquite_Folder.3.70/mesquite/distance/ClusterAnalysis/ClusterAnalysis.class java/Mesquite_Folder.3.70/mesquite/distance/F81Distance/ java/Mesquite_Folder.3.70/mesquite/distance/F81Distance/F81Distance.class java/Mesquite_Folder.3.70/mesquite/distance/F81Distance/F81TD.class java/Mesquite_Folder.3.70/mesquite/distance/AverageOfDistances/ java/Mesquite_Folder.3.70/mesquite/distance/AverageOfDistances/AvgDistances.class java/Mesquite_Folder.3.70/mesquite/distance/AverageOfDistances/AverageOfDistances.class java/Mesquite_Folder.3.70/mesquite/Mesquite.class java/Mesquite_Folder.3.70/mesquite/basic/ java/Mesquite_Folder.3.70/mesquite/basic/ManageNotesBlock/ java/Mesquite_Folder.3.70/mesquite/basic/ManageNotesBlock/ManageNotesBlock.class java/Mesquite_Folder.3.70/mesquite/basic/ManageNotesBlock/NotesBlock.class java/Mesquite_Folder.3.70/mesquite/basic/ManageNotesBlock/NotesBlockTest.class java/Mesquite_Folder.3.70/mesquite/basic/AuthorDefaults/ java/Mesquite_Folder.3.70/mesquite/basic/AuthorDefaults/AuthorDefaults.class java/Mesquite_Folder.3.70/mesquite/basic/VoucherInfoCoordinator/ java/Mesquite_Folder.3.70/mesquite/basic/VoucherInfoCoordinator/VoucherInfoCoordinator.class java/Mesquite_Folder.3.70/mesquite/basic/MergeTaxa/ java/Mesquite_Folder.3.70/mesquite/basic/MergeTaxa/MergeTaxa.class java/Mesquite_Folder.3.70/mesquite/basic/StoredTaxonPairs/ java/Mesquite_Folder.3.70/mesquite/basic/StoredTaxonPairs/StoredTaxonPairs.class java/Mesquite_Folder.3.70/mesquite/basic/ManageLabelsBlock/ java/Mesquite_Folder.3.70/mesquite/basic/ManageLabelsBlock/LabelsBlockTest.class java/Mesquite_Folder.3.70/mesquite/basic/ManageLabelsBlock/LabelsBlock.class java/Mesquite_Folder.3.70/mesquite/basic/ManageLabelsBlock/ManageLabelsBlock.class java/Mesquite_Folder.3.70/mesquite/basic/BasicStringMatcher/ java/Mesquite_Folder.3.70/mesquite/basic/BasicStringMatcher/BasicStringMatcher.class java/Mesquite_Folder.3.70/mesquite/basic/ManageSetsBlock/ java/Mesquite_Folder.3.70/mesquite/basic/ManageSetsBlock/ManageSetsBlock.class java/Mesquite_Folder.3.70/mesquite/basic/ManageSetsBlock/SETSBlock.class java/Mesquite_Folder.3.70/mesquite/basic/ManageSetsBlock/SetsBlockTest.class java/Mesquite_Folder.3.70/mesquite/basic/PrefixedStringMatcher/ java/Mesquite_Folder.3.70/mesquite/basic/PrefixedStringMatcher/PrefixedStringMatcher.class java/Mesquite_Folder.3.70/mesquite/basic/CurrentTaxaPartition/ java/Mesquite_Folder.3.70/mesquite/basic/CurrentTaxaPartition/CurrentTaxaPartition.class java/Mesquite_Folder.3.70/mesquite/basic/ManageAuthors/ java/Mesquite_Folder.3.70/mesquite/basic/ManageAuthors/AuthorsBlockTest.class java/Mesquite_Folder.3.70/mesquite/basic/ManageAuthors/ManageAuthors.class java/Mesquite_Folder.3.70/mesquite/basic/ManageAuthors/AuthorsBlock.class java/Mesquite_Folder.3.70/mesquite/basic/explanation.txt java/Mesquite_Folder.3.70/mesquite/basic/zzDetokenizeTaxonNames/ java/Mesquite_Folder.3.70/mesquite/basic/zzDetokenizeTaxonNames/zzDetokenizeTaxonNames.class java/Mesquite_Folder.3.70/mesquite/basic/RemoveFromTaxonNames/ java/Mesquite_Folder.3.70/mesquite/basic/RemoveFromTaxonNames/RemoveFromTaxonNames.class java/Mesquite_Folder.3.70/mesquite/basic/ExamplesNavigator/ java/Mesquite_Folder.3.70/mesquite/basic/ExamplesNavigator/LinkPanel.class java/Mesquite_Folder.3.70/mesquite/basic/ExamplesNavigator/FieldPanel.class java/Mesquite_Folder.3.70/mesquite/basic/ExamplesNavigator/LinkBanner.class java/Mesquite_Folder.3.70/mesquite/basic/ExamplesNavigator/TitlePanel.class java/Mesquite_Folder.3.70/mesquite/basic/ExamplesNavigator/ExamplesNavigatorWindow.class java/Mesquite_Folder.3.70/mesquite/basic/ExamplesNavigator/ExamplesNavigator.class java/Mesquite_Folder.3.70/mesquite/basic/BasicParametersExplorer/ java/Mesquite_Folder.3.70/mesquite/basic/BasicParametersExplorer/PEWindow.class java/Mesquite_Folder.3.70/mesquite/basic/BasicParametersExplorer/64centre.gif java/Mesquite_Folder.3.70/mesquite/basic/BasicParametersExplorer/BasicParametersExplorer.class java/Mesquite_Folder.3.70/mesquite/basic/BasicParametersExplorer/FieldPanel.class java/Mesquite_Folder.3.70/mesquite/basic/BasicParametersExplorer/32centre.gif java/Mesquite_Folder.3.70/mesquite/basic/BasicParametersExplorer/centre.gif java/Mesquite_Folder.3.70/mesquite/basic/CondenseTaxonNames/ java/Mesquite_Folder.3.70/mesquite/basic/CondenseTaxonNames/CondenseTaxonNames.class java/Mesquite_Folder.3.70/mesquite/basic/TruncTaxonNames/ java/Mesquite_Folder.3.70/mesquite/basic/TruncTaxonNames/TruncTaxonNames.class java/Mesquite_Folder.3.70/mesquite/basic/MergeTaxaByName/ java/Mesquite_Folder.3.70/mesquite/basic/MergeTaxaByName/MergeTaxaByName.class java/Mesquite_Folder.3.70/mesquite/basic/RemoveTokensTaxonNames/ java/Mesquite_Folder.3.70/mesquite/basic/RemoveTokensTaxonNames/RemoveTokensTaxonNames.class java/Mesquite_Folder.3.70/mesquite/basic/RawNexusBlockEditor/ java/Mesquite_Folder.3.70/mesquite/basic/RawNexusBlockEditor/RawNexusBlockEditor.class java/Mesquite_Folder.3.70/mesquite/basic/PrefixTaxonNameWithGroup/ java/Mesquite_Folder.3.70/mesquite/basic/PrefixTaxonNameWithGroup/PrefixTaxonNameWithGroup.class java/Mesquite_Folder.3.70/mesquite/basic/ManageTaxaPartitions/ java/Mesquite_Folder.3.70/mesquite/basic/ManageTaxaPartitions/ManageTaxaPartitions.class java/Mesquite_Folder.3.70/mesquite/basic/ManageTaxaPartitions/TPartNexusCommandTest.class java/Mesquite_Folder.3.70/mesquite/basic/TaxaSelCoordinator/ java/Mesquite_Folder.3.70/mesquite/basic/TaxaSelCoordinator/TaxaSelCoordinator.class java/Mesquite_Folder.3.70/mesquite/basic/GoToWebPage/ java/Mesquite_Folder.3.70/mesquite/basic/GoToWebPage/GoToWebPage.class java/Mesquite_Folder.3.70/mesquite/basic/GoToWebPage/GoToWebPageWindow.class java/Mesquite_Folder.3.70/mesquite/basic/TextWindowMaker/ java/Mesquite_Folder.3.70/mesquite/basic/TextWindowMaker/TextWindowMaker.class java/Mesquite_Folder.3.70/mesquite/basic/ManageArchivedTaxonNames/ java/Mesquite_Folder.3.70/mesquite/basic/ManageArchivedTaxonNames/TSetNexusCommandTest.class java/Mesquite_Folder.3.70/mesquite/basic/ManageArchivedTaxonNames/ManageArchivedTaxonNames.class java/Mesquite_Folder.3.70/mesquite/basic/ManageFileComments/ java/Mesquite_Folder.3.70/mesquite/basic/ManageFileComments/FileCommentBlockTest.class java/Mesquite_Folder.3.70/mesquite/basic/ManageFileComments/ManageFileComments.class java/Mesquite_Folder.3.70/mesquite/basic/ManageFileComments/FileNoteNexusCommandTest.class java/Mesquite_Folder.3.70/mesquite/basic/ManageFileComments/FileCommentsBlock.class java/Mesquite_Folder.3.70/mesquite/basic/DeleteTaxonFootnotes/ java/Mesquite_Folder.3.70/mesquite/basic/DeleteTaxonFootnotes/DeleteTaxonFootnotes.class java/Mesquite_Folder.3.70/mesquite/basic/aBasicIntro/ java/Mesquite_Folder.3.70/mesquite/basic/aBasicIntro/aBasicIntro.class java/Mesquite_Folder.3.70/mesquite/basic/SearchNameTaxonSelector/ java/Mesquite_Folder.3.70/mesquite/basic/SearchNameTaxonSelector/SearchNameTaxonSelector.class java/Mesquite_Folder.3.70/mesquite/basic/ReplaceInTaxonNames/ java/Mesquite_Folder.3.70/mesquite/basic/ReplaceInTaxonNames/ReplaceInTaxonNames.class java/Mesquite_Folder.3.70/mesquite/basic/ManageTaxaSets/ java/Mesquite_Folder.3.70/mesquite/basic/ManageTaxaSets/ManageTaxaSets.class java/Mesquite_Folder.3.70/mesquite/basic/ManageTaxaSets/TSetNexusCommandTest.class java/Mesquite_Folder.3.70/mesquite/basic/DuplicateTaxa/ java/Mesquite_Folder.3.70/mesquite/basic/DuplicateTaxa/DuplicateTaxa.class java/Mesquite_Folder.3.70/mesquite/basic/ListInFileTaxonSelector/ java/Mesquite_Folder.3.70/mesquite/basic/ListInFileTaxonSelector/ListInFileTaxonSelector.class java/Mesquite_Folder.3.70/mesquite/basic/ShowText/ java/Mesquite_Folder.3.70/mesquite/basic/ShowText/ShowText.class java/Mesquite_Folder.3.70/mesquite/basic/zTokenizeTaxonNames/ java/Mesquite_Folder.3.70/mesquite/basic/zTokenizeTaxonNames/zTokenizeTaxonNames.class java/Mesquite_Folder.3.70/mesquite/basic/VoucherInfoFromFlexTable/ java/Mesquite_Folder.3.70/mesquite/basic/VoucherInfoFromFlexTable/VoucherInfoFromFlexTable.class java/Mesquite_Folder.3.70/mesquite/basic/NextProject/ java/Mesquite_Folder.3.70/mesquite/basic/NextProject/NextProjectWindow.class java/Mesquite_Folder.3.70/mesquite/basic/NextProject/NextProject.class java/Mesquite_Folder.3.70/mesquite/basic/SuffixTaxonNames/ java/Mesquite_Folder.3.70/mesquite/basic/SuffixTaxonNames/SuffixTaxonNames.class java/Mesquite_Folder.3.70/mesquite/basic/AssignTaxonNames/ java/Mesquite_Folder.3.70/mesquite/basic/AssignTaxonNames/AssignTaxonNames.class java/Mesquite_Folder.3.70/mesquite/basic/AddToTaxonNames/ java/Mesquite_Folder.3.70/mesquite/basic/AddToTaxonNames/AddToTaxonNames.class java/Mesquite_Folder.3.70/mesquite/charts/ java/Mesquite_Folder.3.70/mesquite/charts/ItemValuesChart/ java/Mesquite_Folder.3.70/mesquite/charts/ItemValuesChart/ItemValuesChart.class java/Mesquite_Folder.3.70/mesquite/charts/ItemValuesChart/ChartMessages.class java/Mesquite_Folder.3.70/mesquite/charts/ItemValuesChart/ItemsChartWindow.class java/Mesquite_Folder.3.70/mesquite/charts/ItemsBiplot/ java/Mesquite_Folder.3.70/mesquite/charts/ItemsBiplot/ItemsBiplot.class java/Mesquite_Folder.3.70/mesquite/charts/ItemsBiplot/ItemsBiplotWindow.class java/Mesquite_Folder.3.70/mesquite/charts/ItemsBiplot/TChartMessages.class java/Mesquite_Folder.3.70/mesquite/charts/TaxonPairValuesChart/ java/Mesquite_Folder.3.70/mesquite/charts/TaxonPairValuesChart/TaxonPairValuesChart.class java/Mesquite_Folder.3.70/mesquite/charts/TaxonPairsScattergram/ java/Mesquite_Folder.3.70/mesquite/charts/TaxonPairsScattergram/TaxonPairsScattergram.class java/Mesquite_Folder.3.70/mesquite/charts/aChartsIntro/ java/Mesquite_Folder.3.70/mesquite/charts/aChartsIntro/aChartsIntro.class java/Mesquite_Folder.3.70/mesquite/charts/ShowMean/ java/Mesquite_Folder.3.70/mesquite/charts/ShowMean/ShowMean.class java/Mesquite_Folder.3.70/mesquite/charts/ShowMean/ShowMeanExtra.class java/Mesquite_Folder.3.70/mesquite/charts/explanation.txt java/Mesquite_Folder.3.70/mesquite/charts/TaxaScattergram/ java/Mesquite_Folder.3.70/mesquite/charts/TaxaScattergram/TaxaScattergram.class java/Mesquite_Folder.3.70/mesquite/charts/Scattergram/ java/Mesquite_Folder.3.70/mesquite/charts/Scattergram/ScattergramCharter.class java/Mesquite_Folder.3.70/mesquite/charts/Scattergram/Scattergram.class java/Mesquite_Folder.3.70/mesquite/charts/Scattergram/ScattergramColorLegend.class java/Mesquite_Folder.3.70/mesquite/charts/Notes/ java/Mesquite_Folder.3.70/mesquite/charts/Notes/Chart Notes.txt java/Mesquite_Folder.3.70/mesquite/charts/MatrixValuesChart/ java/Mesquite_Folder.3.70/mesquite/charts/MatrixValuesChart/MatrixValuesChart.class java/Mesquite_Folder.3.70/mesquite/charts/TreesScattergram/ java/Mesquite_Folder.3.70/mesquite/charts/TreesScattergram/TreesScattergram.class java/Mesquite_Folder.3.70/mesquite/charts/TreeBlockValues/ java/Mesquite_Folder.3.70/mesquite/charts/TreeBlockValues/TreeBlockValues.class java/Mesquite_Folder.3.70/mesquite/charts/ShowYEqualsX/ java/Mesquite_Folder.3.70/mesquite/charts/ShowYEqualsX/ShowYEqualsXExtra.class java/Mesquite_Folder.3.70/mesquite/charts/ShowYEqualsX/ShowYEqualsX.class java/Mesquite_Folder.3.70/mesquite/charts/TreeValuesChart/ java/Mesquite_Folder.3.70/mesquite/charts/TreeValuesChart/TreeValuesChart.class java/Mesquite_Folder.3.70/mesquite/charts/TaxonValuesChart/ java/Mesquite_Folder.3.70/mesquite/charts/TaxonValuesChart/TaxonValuesChart.class java/Mesquite_Folder.3.70/mesquite/charts/CharacterValuesChart/ java/Mesquite_Folder.3.70/mesquite/charts/CharacterValuesChart/CharacterValuesChart.class java/Mesquite_Folder.3.70/mesquite/charts/ShowPercentile/ java/Mesquite_Folder.3.70/mesquite/charts/ShowPercentile/001.gif java/Mesquite_Folder.3.70/mesquite/charts/ShowPercentile/ShowPercentileExtra.class java/Mesquite_Folder.3.70/mesquite/charts/ShowPercentile/ShowPercentile.class java/Mesquite_Folder.3.70/mesquite/charts/ShowPercentile/01.gif java/Mesquite_Folder.3.70/mesquite/charts/ShowPercentile/manual.html java/Mesquite_Folder.3.70/mesquite/charts/ShowPercentile/05.gif java/Mesquite_Folder.3.70/mesquite/charts/NodesScattergram/ java/Mesquite_Folder.3.70/mesquite/charts/NodesScattergram/NodeScattergramWindow.class java/Mesquite_Folder.3.70/mesquite/charts/NodesScattergram/NodesScattergram.class java/Mesquite_Folder.3.70/mesquite/charts/NodesScattergram/NodeLabeller.class java/Mesquite_Folder.3.70/mesquite/charts/CharsScattergram/ java/Mesquite_Folder.3.70/mesquite/charts/CharsScattergram/CharsScattergram.class java/Mesquite_Folder.3.70/mesquite/charts/Histogram/ java/Mesquite_Folder.3.70/mesquite/charts/Histogram/LittlePanel.class java/Mesquite_Folder.3.70/mesquite/charts/Histogram/Histogram.class java/Mesquite_Folder.3.70/mesquite/charts/Histogram/HistogramCharter.class java/Mesquite_Folder.3.70/mesquite/pal/ java/Mesquite_Folder.3.70/mesquite/pal/explanation.txt java/Mesquite_Folder.3.70/mesquite/pal/aPALIntro/ java/Mesquite_Folder.3.70/mesquite/pal/aPALIntro/splash.gif java/Mesquite_Folder.3.70/mesquite/pal/aPALIntro/index.html java/Mesquite_Folder.3.70/mesquite/pal/aPALIntro/aPALIntro.class java/Mesquite_Folder.3.70/mesquite/thinkTrees/ java/Mesquite_Folder.3.70/mesquite/thinkTrees/RandomlyRotate/ java/Mesquite_Folder.3.70/mesquite/thinkTrees/RandomlyRotate/RandomlyRotate.class java/Mesquite_Folder.3.70/mesquite/thinkTrees/Notes/ java/Mesquite_Folder.3.70/mesquite/thinkTrees/Notes/ThinkTrees notes java/Mesquite_Folder.3.70/mesquite/thinkTrees/examples/ java/Mesquite_Folder.3.70/mesquite/thinkTrees/examples/02.treeThinking.nex java/Mesquite_Folder.3.70/mesquite/thinkTrees/AlphabeticTaxonNames/ java/Mesquite_Folder.3.70/mesquite/thinkTrees/AlphabeticTaxonNames/AlphabeticTaxonNames.class java/Mesquite_Folder.3.70/mesquite/thinkTrees/RandomRotateToolAssistant/ java/Mesquite_Folder.3.70/mesquite/thinkTrees/RandomRotateToolAssistant/RandomRotateToolAssistant.class java/Mesquite_Folder.3.70/mesquite/thinkTrees/RandomRotateToolAssistant/randomRotate.gif java/Mesquite_Folder.3.70/mesquite/thinkTrees/RandomRotateToolAssistant/RandomRotateToolExtra.class java/Mesquite_Folder.3.70/mesquite/thinkTrees/RandomRotateToolAssistant/64randomRotate.gif java/Mesquite_Folder.3.70/mesquite/thinkTrees/RandomRotateToolAssistant/32randomRotate.gif java/Mesquite_Folder.3.70/mesquite/thinkTrees/InformCharBoolean/ java/Mesquite_Folder.3.70/mesquite/thinkTrees/InformCharBoolean/InformCharBoolean.class java/Mesquite_Folder.3.70/mesquite/parsimony/ java/Mesquite_Folder.3.70/mesquite/parsimony/RetentionIndexChar/ java/Mesquite_Folder.3.70/mesquite/parsimony/RetentionIndexChar/RetentionIndexChar.class java/Mesquite_Folder.3.70/mesquite/parsimony/RetentionIndexMatrix/ java/Mesquite_Folder.3.70/mesquite/parsimony/RetentionIndexMatrix/RetentionIndexMatrix.class java/Mesquite_Folder.3.70/mesquite/parsimony/CharListParsModels/ java/Mesquite_Folder.3.70/mesquite/parsimony/CharListParsModels/CharListParsModels.class java/Mesquite_Folder.3.70/mesquite/parsimony/ManageTypesets/ java/Mesquite_Folder.3.70/mesquite/parsimony/ManageTypesets/ManageTypesets.class java/Mesquite_Folder.3.70/mesquite/parsimony/ManageTypesets/TypesetNexusCommandTest.class java/Mesquite_Folder.3.70/mesquite/parsimony/CharStepsDifference/ java/Mesquite_Folder.3.70/mesquite/parsimony/CharStepsDifference/CharStepsDifference.class java/Mesquite_Folder.3.70/mesquite/parsimony/ParsimonyOrdered/ java/Mesquite_Folder.3.70/mesquite/parsimony/ParsimonyOrdered/ParsimonyOrdered.class java/Mesquite_Folder.3.70/mesquite/parsimony/ParsimonyCostMatrix/ java/Mesquite_Folder.3.70/mesquite/parsimony/ParsimonyCostMatrix/ParsimonyCostMatrix.class java/Mesquite_Folder.3.70/mesquite/parsimony/explanation.txt java/Mesquite_Folder.3.70/mesquite/parsimony/ParsAncestralStates/ java/Mesquite_Folder.3.70/mesquite/parsimony/ParsAncestralStates/ParsAncestralStates.class java/Mesquite_Folder.3.70/mesquite/parsimony/InitCategParsimony/ java/Mesquite_Folder.3.70/mesquite/parsimony/InitCategParsimony/InitCategParsimony.class java/Mesquite_Folder.3.70/mesquite/parsimony/StepMatrixCurator/ java/Mesquite_Folder.3.70/mesquite/parsimony/StepMatrixCurator/StepMatrixCurator.class java/Mesquite_Folder.3.70/mesquite/parsimony/StepMatrixCurator/StepMatrixModel.class java/Mesquite_Folder.3.70/mesquite/parsimony/StepMatrixCurator/StepmatrixNexusCmdTest.class java/Mesquite_Folder.3.70/mesquite/parsimony/ParsimonyLinear/ java/Mesquite_Folder.3.70/mesquite/parsimony/ParsimonyLinear/ParsimonyLinear.class java/Mesquite_Folder.3.70/mesquite/parsimony/ParsimonyUnordered/ java/Mesquite_Folder.3.70/mesquite/parsimony/ParsimonyUnordered/ParsimonyUnordered.class java/Mesquite_Folder.3.70/mesquite/parsimony/StepsInCharacter/ java/Mesquite_Folder.3.70/mesquite/parsimony/StepsInCharacter/StepsInCharacter.class java/Mesquite_Folder.3.70/mesquite/parsimony/ParsimonySquared/ java/Mesquite_Folder.3.70/mesquite/parsimony/ParsimonySquared/ParsimonySquared.class java/Mesquite_Folder.3.70/mesquite/parsimony/CurrentParsModels/ java/Mesquite_Folder.3.70/mesquite/parsimony/CurrentParsModels/CurrentParsModels.class java/Mesquite_Folder.3.70/mesquite/parsimony/InitializeParsimony/ java/Mesquite_Folder.3.70/mesquite/parsimony/InitializeParsimony/InitializeParsimony.class java/Mesquite_Folder.3.70/mesquite/parsimony/ConsistIndexChar/ java/Mesquite_Folder.3.70/mesquite/parsimony/ConsistIndexChar/ConsistIndexChar.class java/Mesquite_Folder.3.70/mesquite/parsimony/Treelength/ java/Mesquite_Folder.3.70/mesquite/parsimony/Treelength/Treelength.class java/Mesquite_Folder.3.70/mesquite/parsimony/aParsimonyIntro/ java/Mesquite_Folder.3.70/mesquite/parsimony/aParsimonyIntro/aParsimonyIntro.class java/Mesquite_Folder.3.70/mesquite/parsimony/StoredParsModel/ java/Mesquite_Folder.3.70/mesquite/parsimony/StoredParsModel/ParsModelCompatInfo.class java/Mesquite_Folder.3.70/mesquite/parsimony/StoredParsModel/StoredParsModel.class java/Mesquite_Folder.3.70/mesquite/parsimony/InitContParsimony/ java/Mesquite_Folder.3.70/mesquite/parsimony/InitContParsimony/InitContParsimony.class java/Mesquite_Folder.3.70/mesquite/parsimony/lib/ java/Mesquite_Folder.3.70/mesquite/parsimony/lib/ContParsimonyModel.class java/Mesquite_Folder.3.70/mesquite/parsimony/lib/MPRProcessor.class java/Mesquite_Folder.3.70/mesquite/parsimony/lib/SquaredModel.class java/Mesquite_Folder.3.70/mesquite/parsimony/lib/ParsModelSource.class java/Mesquite_Folder.3.70/mesquite/parsimony/lib/ParsimonyModelSet.class java/Mesquite_Folder.3.70/mesquite/parsimony/lib/LinearModel.class java/Mesquite_Folder.3.70/mesquite/parsimony/lib/CategParsimonyModel.class java/Mesquite_Folder.3.70/mesquite/parsimony/lib/CostMatrixModel.class java/Mesquite_Folder.3.70/mesquite/parsimony/lib/ParsAncStatesForModel.class java/Mesquite_Folder.3.70/mesquite/parsimony/lib/IrreversibleModel.class java/Mesquite_Folder.3.70/mesquite/parsimony/lib/CharacterSteps.class java/Mesquite_Folder.3.70/mesquite/parsimony/lib/UnorderedModel.class java/Mesquite_Folder.3.70/mesquite/parsimony/lib/OrderedModel.class java/Mesquite_Folder.3.70/mesquite/parsimony/lib/DolloModel.class java/Mesquite_Folder.3.70/mesquite/parsimony/lib/ParsimonyModel.class java/Mesquite_Folder.3.70/mesquite/parsimony/TreelengthForMatrix/ java/Mesquite_Folder.3.70/mesquite/parsimony/TreelengthForMatrix/TreelengthForMatrix.class java/Mesquite_Folder.3.70/mesquite/parsimony/ConsistIndexMatrix/ java/Mesquite_Folder.3.70/mesquite/parsimony/ConsistIndexMatrix/ConsistIndexMatrix.class java/Mesquite_Folder.3.70/mesquite/parsimony/TypesetList/ java/Mesquite_Folder.3.70/mesquite/parsimony/TypesetList/TypesetList.class java/Mesquite_Folder.3.70/mesquite/parsimony/ParsCharSteps/ java/Mesquite_Folder.3.70/mesquite/parsimony/ParsCharSteps/ParsCharSteps.class java/Mesquite_Folder.3.70/mesquite/minimal/ java/Mesquite_Folder.3.70/mesquite/minimal/WindowBabysitter/ java/Mesquite_Folder.3.70/mesquite/minimal/WindowBabysitter/WindowBabysitter.class java/Mesquite_Folder.3.70/mesquite/minimal/ManageTaxa/ java/Mesquite_Folder.3.70/mesquite/minimal/ManageTaxa/ManageTaxa.class java/Mesquite_Folder.3.70/mesquite/minimal/ManageTaxa/TAXANexusCommandTest.class java/Mesquite_Folder.3.70/mesquite/minimal/ManageTaxa/TaxaBlockTest.class java/Mesquite_Folder.3.70/mesquite/minimal/NEXUSDefaults/ java/Mesquite_Folder.3.70/mesquite/minimal/NEXUSDefaults/NEXUSDefaults.class java/Mesquite_Folder.3.70/mesquite/minimal/Simplicity/ java/Mesquite_Folder.3.70/mesquite/minimal/Simplicity/simplifications/ java/Mesquite_Folder.3.70/mesquite/minimal/Simplicity/simplifications/abMacclade.xml java/Mesquite_Folder.3.70/mesquite/minimal/Simplicity/simplifications/zaNoneHidden.xml java/Mesquite_Folder.3.70/mesquite/minimal/Simplicity/simplifications/adMorphPhyl.xml java/Mesquite_Folder.3.70/mesquite/minimal/Simplicity/simplifications/zzMinimal.xml java/Mesquite_Folder.3.70/mesquite/minimal/Simplicity/simplifications/acBasicPopGen.xml java/Mesquite_Folder.3.70/mesquite/minimal/Simplicity/TrianglePanel.class java/Mesquite_Folder.3.70/mesquite/minimal/Simplicity/Simplicity.class java/Mesquite_Folder.3.70/mesquite/minimal/Simplicity/ClassHeadersPanel.class java/Mesquite_Folder.3.70/mesquite/minimal/Simplicity/PackageCheckbox.class java/Mesquite_Folder.3.70/mesquite/minimal/Simplicity/ModePanel.class java/Mesquite_Folder.3.70/mesquite/minimal/Simplicity/EditModeButton.class java/Mesquite_Folder.3.70/mesquite/minimal/Simplicity/OuterPackagesPanel.class java/Mesquite_Folder.3.70/mesquite/minimal/Simplicity/LoadButton.class java/Mesquite_Folder.3.70/mesquite/minimal/Simplicity/simplification.html java/Mesquite_Folder.3.70/mesquite/minimal/Simplicity/ClassesPane.class java/Mesquite_Folder.3.70/mesquite/minimal/Simplicity/instructions.html java/Mesquite_Folder.3.70/mesquite/minimal/Simplicity/SimplifyControlWindow.class java/Mesquite_Folder.3.70/mesquite/minimal/Simplicity/SaveRenameDeleteButton.class java/Mesquite_Folder.3.70/mesquite/minimal/Simplicity/MovePanel.class java/Mesquite_Folder.3.70/mesquite/minimal/Simplicity/PackagesPanel.class java/Mesquite_Folder.3.70/mesquite/minimal/Simplicity/LoadSaveDeleteButton.class java/Mesquite_Folder.3.70/mesquite/minimal/OpenSpecialNEXUS/ java/Mesquite_Folder.3.70/mesquite/minimal/OpenSpecialNEXUS/OpenSpecialNEXUS.class java/Mesquite_Folder.3.70/mesquite/minimal/ShowEmployeeTree/ java/Mesquite_Folder.3.70/mesquite/minimal/ShowEmployeeTree/ShowEmployeeTree.class java/Mesquite_Folder.3.70/mesquite/minimal/ShowEmployeeTree/EmployeeTreeWindow.class java/Mesquite_Folder.3.70/mesquite/minimal/explanation.txt java/Mesquite_Folder.3.70/mesquite/minimal/InterpretNEXUS/ java/Mesquite_Folder.3.70/mesquite/minimal/InterpretNEXUS/InterpretNEXUS.class java/Mesquite_Folder.3.70/mesquite/minimal/Utilities/ java/Mesquite_Folder.3.70/mesquite/minimal/Utilities/Utilities.class java/Mesquite_Folder.3.70/mesquite/minimal/Defaults/ java/Mesquite_Folder.3.70/mesquite/minimal/Defaults/Defaults.class java/Mesquite_Folder.3.70/mesquite/minimal/ManageMesquiteBlock/ java/Mesquite_Folder.3.70/mesquite/minimal/ManageMesquiteBlock/MesquiteBlock.class java/Mesquite_Folder.3.70/mesquite/minimal/ManageMesquiteBlock/MesquiteBlockTest.class java/Mesquite_Folder.3.70/mesquite/minimal/ManageMesquiteBlock/ManageMesquiteBlock.class java/Mesquite_Folder.3.70/mesquite/minimal/IDsDefaults/ java/Mesquite_Folder.3.70/mesquite/minimal/IDsDefaults/IDsDefaults.class java/Mesquite_Folder.3.70/mesquite/minimal/StoredTaxa/ java/Mesquite_Folder.3.70/mesquite/minimal/StoredTaxa/StoredTaxa.class java/Mesquite_Folder.3.70/mesquite/minimal/ManageForeignBlocks/ java/Mesquite_Folder.3.70/mesquite/minimal/ManageForeignBlocks/ManageForeignBlocks.class java/Mesquite_Folder.3.70/mesquite/minimal/ManageForeignBlocks/ForeignBlock.class java/Mesquite_Folder.3.70/mesquite/minimal/BasicFileCoordinator/ java/Mesquite_Folder.3.70/mesquite/minimal/BasicFileCoordinator/AbundanceTPanel.class java/Mesquite_Folder.3.70/mesquite/minimal/BasicFileCoordinator/splash.gif java/Mesquite_Folder.3.70/mesquite/minimal/BasicFileCoordinator/index.html java/Mesquite_Folder.3.70/mesquite/minimal/BasicFileCoordinator/ScrollPanel.class java/Mesquite_Folder.3.70/mesquite/minimal/BasicFileCoordinator/TreesRPanel.class java/Mesquite_Folder.3.70/mesquite/minimal/BasicFileCoordinator/FilePanel.class java/Mesquite_Folder.3.70/mesquite/minimal/BasicFileCoordinator/AddElementPanel.class java/Mesquite_Folder.3.70/mesquite/minimal/BasicFileCoordinator/ProjectPanel.class java/Mesquite_Folder.3.70/mesquite/minimal/BasicFileCoordinator/splashSmall.gif java/Mesquite_Folder.3.70/mesquite/minimal/BasicFileCoordinator/AbundanceMPanel.class java/Mesquite_Folder.3.70/mesquite/minimal/BasicFileCoordinator/ElementPanel.class java/Mesquite_Folder.3.70/mesquite/minimal/BasicFileCoordinator/AssocPanel.class java/Mesquite_Folder.3.70/mesquite/minimal/BasicFileCoordinator/CategMPanel.class java/Mesquite_Folder.3.70/mesquite/minimal/BasicFileCoordinator/MElementPanel.class java/Mesquite_Folder.3.70/mesquite/minimal/BasicFileCoordinator/splash.gif copy java/Mesquite_Folder.3.70/mesquite/minimal/BasicFileCoordinator/BasicFileCoordinator.class java/Mesquite_Folder.3.70/mesquite/minimal/BasicFileCoordinator/MeristicMPanel.class java/Mesquite_Folder.3.70/mesquite/minimal/BasicFileCoordinator/TaxaPanel.class java/Mesquite_Folder.3.70/mesquite/minimal/BasicFileCoordinator/ProjectWindow.class java/Mesquite_Folder.3.70/mesquite/minimal/BasicFileCoordinator/NotesPanel.class java/Mesquite_Folder.3.70/mesquite/minimal/BasicFileCoordinator/FileRead.class java/Mesquite_Folder.3.70/mesquite/minimal/BasicFileCoordinator/projectHTML/ java/Mesquite_Folder.3.70/mesquite/minimal/BasicFileCoordinator/projectHTML/taxaBlockSmallINREPOSITORY.gif java/Mesquite_Folder.3.70/mesquite/minimal/BasicFileCoordinator/projectHTML/projectPanel.jpg java/Mesquite_Folder.3.70/mesquite/minimal/BasicFileCoordinator/projectHTML/matrixMolecSmall.gif java/Mesquite_Folder.3.70/mesquite/minimal/BasicFileCoordinator/projectHTML/matrixMolecSmallUNCOMMITTED.gif java/Mesquite_Folder.3.70/mesquite/minimal/BasicFileCoordinator/projectHTML/matrixContSmallUNCOMMITTED.gif java/Mesquite_Folder.3.70/mesquite/minimal/BasicFileCoordinator/projectHTML/queryGray.gif 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java/Mesquite_Folder.3.70/mesquite/align/SimpleBlockMover/splitBlock.gif java/Mesquite_Folder.3.70/mesquite/align/SimpleBlockMover/Hand.gif java/Mesquite_Folder.3.70/mesquite/align/ZapGaps/ java/Mesquite_Folder.3.70/mesquite/align/ZapGaps/ZapGaps.class java/Mesquite_Folder.3.70/mesquite/align/AlignScoreForTaxon/ java/Mesquite_Folder.3.70/mesquite/align/AlignScoreForTaxon/AlignScoreForTaxon.class java/Mesquite_Folder.3.70/mesquite/align/lib/ java/Mesquite_Folder.3.70/mesquite/align/lib/BlockMover.class java/Mesquite_Folder.3.70/mesquite/align/lib/MultiBlockMoveBase.class java/Mesquite_Folder.3.70/mesquite/align/lib/ExternalSequenceAligner.class java/Mesquite_Folder.3.70/mesquite/align/lib/MultipleSequenceAligner.class java/Mesquite_Folder.3.70/mesquite/align/lib/AlignUtil.class java/Mesquite_Folder.3.70/mesquite/align/lib/AlignScoreForTaxonGen.class java/Mesquite_Folder.3.70/mesquite/align/lib/AlignmentHelper.class java/Mesquite_Folder.3.70/mesquite/align/lib/AlignThread.class java/Mesquite_Folder.3.70/mesquite/align/lib/AlignMatch.class java/Mesquite_Folder.3.70/mesquite/align/lib/PairwiseAligner.class java/Mesquite_Folder.3.70/mesquite/align/lib/AlignTool.class java/Mesquite_Folder.3.70/mesquite/align/lib/AlignmentHelperQuadraticSpace.class java/Mesquite_Folder.3.70/mesquite/align/lib/AlignShiftToDroppedBase.class java/Mesquite_Folder.3.70/mesquite/align/lib/TwoSequenceAlignerGaps.class java/Mesquite_Folder.3.70/mesquite/align/lib/AlignmentHelperLinearSpace.class java/Mesquite_Folder.3.70/mesquite/align/lib/AlignMultipleSequencesMachine.class java/Mesquite_Folder.3.70/mesquite/align/lib/TwoSequenceAligner.class java/Mesquite_Folder.3.70/mesquite/align/ClustalAlign/ java/Mesquite_Folder.3.70/mesquite/align/ClustalAlign/ClustalAlign.class java/Mesquite_Folder.3.70/mesquite/align/MAFFTAlign/ java/Mesquite_Folder.3.70/mesquite/align/MAFFTAlign/MAFFTAlign.class java/Mesquite_Folder.3.70/mesquite/align/ColorMisaligned/ java/Mesquite_Folder.3.70/mesquite/align/ColorMisaligned/ColorMisaligned.class java/Mesquite_Folder.3.70/mesquite/align/MultiBlockSplitter/ java/Mesquite_Folder.3.70/mesquite/align/MultiBlockSplitter/MultiBlockSplitter$MultiBlockTool.class java/Mesquite_Folder.3.70/mesquite/align/MultiBlockSplitter/32MultiBlockSplitter.gif java/Mesquite_Folder.3.70/mesquite/align/MultiBlockSplitter/32MultiBlockSplitterOption.gif java/Mesquite_Folder.3.70/mesquite/align/MultiBlockSplitter/MultiBlockSplitterOption.gif java/Mesquite_Folder.3.70/mesquite/align/MultiBlockSplitter/64MultiBlockSplitter.gif java/Mesquite_Folder.3.70/mesquite/align/MultiBlockSplitter/MultiBlockSplitter.gif java/Mesquite_Folder.3.70/mesquite/align/MultiBlockSplitter/64CrossHair.gif java/Mesquite_Folder.3.70/mesquite/align/MultiBlockSplitter/64MultiBlockSplitterOption.gif java/Mesquite_Folder.3.70/mesquite/align/MultiBlockSplitter/MultiBlockSplitter.class java/Mesquite_Folder.3.70/mesquite/align/MultiBlockSplitter/32CrossHair.gif java/Mesquite_Folder.3.70/mesquite/align/MultiBlockSplitter/CrossHair.gif java/Mesquite_Folder.3.70/mesquite/align/ColorForAlignment/ java/Mesquite_Folder.3.70/mesquite/align/ColorForAlignment/ColorForAlignment.class java/Mesquite_Folder.3.70/mesquite/align/SelectedBlockMover/ java/Mesquite_Folder.3.70/mesquite/align/SelectedBlockMover/SelectedBlockMover.gif java/Mesquite_Folder.3.70/mesquite/align/SelectedBlockMover/32SelectedBlockMover.gif java/Mesquite_Folder.3.70/mesquite/align/SelectedBlockMover/SelectedBlockMover$SelectedBlockTool.class java/Mesquite_Folder.3.70/mesquite/align/SelectedBlockMover/SelectedBlockMover.class java/Mesquite_Folder.3.70/mesquite/align/SelectedBlockMover/64CrossHair.gif java/Mesquite_Folder.3.70/mesquite/align/SelectedBlockMover/64SelectedBlockMover.gif java/Mesquite_Folder.3.70/mesquite/align/SelectedBlockMover/32CrossHair.gif java/Mesquite_Folder.3.70/mesquite/align/SelectedBlockMover/CrossHair.gif java/Mesquite_Folder.3.70/mesquite/align/AlignScoreForTaxonRC/ java/Mesquite_Folder.3.70/mesquite/align/AlignScoreForTaxonRC/AlignScoreForTaxonRC.class java/Mesquite_Folder.3.70/mesquite/align/AlignDNAToProtein/ java/Mesquite_Folder.3.70/mesquite/align/AlignDNAToProtein/AlignDNAToProtein.class java/Mesquite_Folder.3.70/mesquite/opentree/ java/Mesquite_Folder.3.70/mesquite/opentree/CopyNewickForOpenTree/ java/Mesquite_Folder.3.70/mesquite/opentree/CopyNewickForOpenTree/CopyNewickForOpenTree.class java/Mesquite_Folder.3.70/mesquite/opentree/CopyNewickForOpenTree/CopyNewickForOpenTree$OpenTreeTree.class java/Mesquite_Folder.3.70/mesquite/opentree/ExportTreeForOpenTree/ java/Mesquite_Folder.3.70/mesquite/opentree/ExportTreeForOpenTree/ExportTreeForOpenTree.class java/Mesquite_Folder.3.70/mesquite/opentree/ExemplarTaxonAssistant/ java/Mesquite_Folder.3.70/mesquite/opentree/ExemplarTaxonAssistant/ExemplarTaxonAssistant.class java/Mesquite_Folder.3.70/mesquite/opentree/OpenTreeLabeller/ java/Mesquite_Folder.3.70/mesquite/opentree/OpenTreeLabeller/32openTree.gif java/Mesquite_Folder.3.70/mesquite/opentree/OpenTreeLabeller/OpenTreeToolExtra.class java/Mesquite_Folder.3.70/mesquite/opentree/OpenTreeLabeller/OpenTreeLabeller.class java/Mesquite_Folder.3.70/mesquite/opentree/OpenTreeLabeller/64openTree.gif java/Mesquite_Folder.3.70/mesquite/opentree/OpenTreeLabeller/openTree.gif java/Mesquite_Folder.3.70/mesquite/opentree/lib/ java/Mesquite_Folder.3.70/mesquite/opentree/lib/OpenTreeUtil.class java/Mesquite_Folder.3.70/mesquite/correl/ java/Mesquite_Folder.3.70/mesquite/correl/aCorrelPackageIntro/ java/Mesquite_Folder.3.70/mesquite/correl/aCorrelPackageIntro/splash.gif java/Mesquite_Folder.3.70/mesquite/correl/aCorrelPackageIntro/splash.psd.zip java/Mesquite_Folder.3.70/mesquite/correl/aCorrelPackageIntro/aCorrelPackageIntro.class java/Mesquite_Folder.3.70/mesquite/correl/Pagel94/ java/Mesquite_Folder.3.70/mesquite/correl/Pagel94/Pagel94.class java/Mesquite_Folder.3.70/mesquite/correl/notes/ java/Mesquite_Folder.3.70/mesquite/correl/notes/Putzer method java/Mesquite_Folder.3.70/mesquite/correl/notes/omphalina.ppy java/Mesquite_Folder.3.70/mesquite/correl/notes/Pagel94test.nex java/Mesquite_Folder.3.70/mesquite/correl/notes/PEM Notes java/Mesquite_Folder.3.70/mesquite/correl/notes/disc2.ppy java/Mesquite_Folder.3.70/mesquite/correl/notes/disc2.nex java/Mesquite_Folder.3.70/mesquite/correl/notes/omphalina.nex java/Mesquite_Folder.3.70/mesquite/correl/notes/Pagel94test.ppy java/Mesquite_Folder.3.70/mesquite/correl/notes/Pagel94Hominids.nex java/Mesquite_Folder.3.70/mesquite/correl/lib/ java/Mesquite_Folder.3.70/mesquite/correl/lib/Pagel94Calculator.class java/Mesquite_Folder.3.70/mesquite/correl/lib/MultipleProbCategCharModel.class java/Mesquite_Folder.3.70/mesquite/correl/lib/ComplexMatrix.class java/Mesquite_Folder.3.70/mesquite/correl/lib/PagelMatrixModel$StuckSearchException.class java/Mesquite_Folder.3.70/mesquite/correl/lib/MultipleProbabilityModel.class java/Mesquite_Folder.3.70/mesquite/correl/lib/CLogger.class java/Mesquite_Folder.3.70/mesquite/correl/lib/PagelMatrixModel.class java/Mesquite_Folder.3.70/mesquite/correl/CorrelationViewer/ java/Mesquite_Folder.3.70/mesquite/correl/CorrelationViewer/CorrelPanel.class java/Mesquite_Folder.3.70/mesquite/correl/CorrelationViewer/CorrelationViewer.class java/Mesquite_Folder.3.70/mesquite/mb/ java/Mesquite_Folder.3.70/mesquite/mb/TreesFromMrBayes/ java/Mesquite_Folder.3.70/mesquite/mb/TreesFromMrBayes/TreesFromMrBayes.class java/Mesquite_Folder.3.70/mesquite/mb/SimplifyTaxonNames/ java/Mesquite_Folder.3.70/mesquite/mb/SimplifyTaxonNames/SimplifyTaxonNames.class java/Mesquite_Folder.3.70/mesquite/mb/MrBayesScore/ java/Mesquite_Folder.3.70/mesquite/mb/MrBayesScore/MrBayesScore.class java/Mesquite_Folder.3.70/mesquite/mb/ExportForMrBayes/ java/Mesquite_Folder.3.70/mesquite/mb/ExportForMrBayes/ExportForMrBayes.class java/Mesquite_Folder.3.70/mesquite/mb/BestBayesTree/ java/Mesquite_Folder.3.70/mesquite/mb/BestBayesTree/BestBayesTree.class java/Mesquite_Folder.3.70/mesquite/mb/aMBIntro/ java/Mesquite_Folder.3.70/mesquite/mb/aMBIntro/aMBIntro.class java/Mesquite_Folder.3.70/mesquite/mb/lib/ java/Mesquite_Folder.3.70/mesquite/mb/lib/ExportForMrBayesLib.class java/Mesquite_Folder.3.70/mesquite/assoc/ java/Mesquite_Folder.3.70/mesquite/assoc/PartitionFromAssociation/ java/Mesquite_Folder.3.70/mesquite/assoc/PartitionFromAssociation/PartitionFromAssociation.class java/Mesquite_Folder.3.70/mesquite/assoc/PartitionFromAssociation/PartCompatibilityTest.class java/Mesquite_Folder.3.70/mesquite/assoc/ManageAssociations/ java/Mesquite_Folder.3.70/mesquite/assoc/ManageAssociations/ManageAssociations.class java/Mesquite_Folder.3.70/mesquite/assoc/ManageAssociations/AssociationBlockTest.class java/Mesquite_Folder.3.70/mesquite/assoc/ManageAssociations/AssociationsBlock.class java/Mesquite_Folder.3.70/mesquite/assoc/TaxonListAssoc/ java/Mesquite_Folder.3.70/mesquite/assoc/TaxonListAssoc/TaxonListAssoc.class java/Mesquite_Folder.3.70/mesquite/assoc/TaxonListAssoc/AssocEditor.class java/Mesquite_Folder.3.70/mesquite/assoc/ManageDistributionBlock/ java/Mesquite_Folder.3.70/mesquite/assoc/ManageDistributionBlock/ManageDistributionBlock.class java/Mesquite_Folder.3.70/mesquite/assoc/ManageDistributionBlock/DistributionBlockTest.class java/Mesquite_Folder.3.70/mesquite/assoc/explanation.txt java/Mesquite_Folder.3.70/mesquite/assoc/macros/ java/Mesquite_Folder.3.70/mesquite/assoc/macros/setupAssocMacro java/Mesquite_Folder.3.70/mesquite/assoc/DepContTreeWindow/ java/Mesquite_Folder.3.70/mesquite/assoc/DepContTreeWindow/DepCTreeWindow.class java/Mesquite_Folder.3.70/mesquite/assoc/DepContTreeWindow/DepContTreeWindow.class java/Mesquite_Folder.3.70/mesquite/assoc/DepContTreeWindow/DepTreeExtra.class java/Mesquite_Folder.3.70/mesquite/assoc/lib/ java/Mesquite_Folder.3.70/mesquite/assoc/lib/SimpleTaxaList.class java/Mesquite_Folder.3.70/mesquite/assoc/lib/AssociationHistory.class java/Mesquite_Folder.3.70/mesquite/assoc/lib/NumberForAssocAndTree.class java/Mesquite_Folder.3.70/mesquite/assoc/lib/ReconstructAssociation.class java/Mesquite_Folder.3.70/mesquite/assoc/lib/NumberForAssociation.class java/Mesquite_Folder.3.70/mesquite/assoc/lib/AssociationSource.class java/Mesquite_Folder.3.70/mesquite/assoc/lib/TaxonWithTaxa.class java/Mesquite_Folder.3.70/mesquite/assoc/lib/AssociationsManager.class java/Mesquite_Folder.3.70/mesquite/assoc/lib/TaxaAssociation.class java/Mesquite_Folder.3.70/mesquite/assoc/StoredAssociations/ java/Mesquite_Folder.3.70/mesquite/assoc/StoredAssociations/StoredAssociations.class java/Mesquite_Folder.3.70/mesquite/assoc/ContainedAssociates/ java/Mesquite_Folder.3.70/mesquite/assoc/ContainedAssociates/ContainedAssocExtra.class java/Mesquite_Folder.3.70/mesquite/assoc/ContainedAssociates/ContainedAssociates.class java/Mesquite_Folder.3.70/mesquite/assoc/ContainedAssociates/ContainedLegend.class java/Mesquite_Folder.3.70/mesquite/assoc/ContainedAssociates/WideTreeDrawing.class java/Mesquite_Folder.3.70/mesquite/assoc/aAssocIntro/ java/Mesquite_Folder.3.70/mesquite/assoc/aAssocIntro/aAssocIntro.class java/Mesquite_Folder.3.70/mesquite/assoc/TaxaAssociationSpecs.txt java/Mesquite_Folder.3.70/mesquite/dmanager/ java/Mesquite_Folder.3.70/mesquite/dmanager/InterchTaxonPrefixSuffix/ java/Mesquite_Folder.3.70/mesquite/dmanager/InterchTaxonPrefixSuffix/InterchTaxonPrefixSuffix.class java/Mesquite_Folder.3.70/mesquite/dmanager/FuseTaxaMatrices/ java/Mesquite_Folder.3.70/mesquite/dmanager/FuseTaxaMatrices/FuseTaxaMatrices.class java/Mesquite_Folder.3.70/mesquite/dmanager/KeepTaxonPrefixSuffix/ java/Mesquite_Folder.3.70/mesquite/dmanager/KeepTaxonPrefixSuffix/KeepTaxonPrefixSuffix.class java/Mesquite_Folder.3.70/mesquite/dmanager/TaxonNameFromSampleNamesFile/ java/Mesquite_Folder.3.70/mesquite/dmanager/TaxonNameFromSampleNamesFile/TaxonNameFromSampleNamesFile.class java/Mesquite_Folder.3.70/mesquite/dmanager/TaxonNamesFileProcessor/ java/Mesquite_Folder.3.70/mesquite/dmanager/TaxonNamesFileProcessor/TaxonNamesFileProcessor.class java/Mesquite_Folder.3.70/mesquite/dmanager/FuseTMSequences/ java/Mesquite_Folder.3.70/mesquite/dmanager/FuseTMSequences/FuseTMSequences.class java/Mesquite_Folder.3.70/mesquite/dmanager/aDmanagerIntro/ java/Mesquite_Folder.3.70/mesquite/dmanager/aDmanagerIntro/aDmanagerIntro.class java/Mesquite_Folder.3.70/mesquite/dmanager/RemoveTaxonPrefixSuffix/ java/Mesquite_Folder.3.70/mesquite/dmanager/RemoveTaxonPrefixSuffix/RemoveTaxonPrefixSuffix.class java/Mesquite_Folder.3.70/mesquite/dmanager/RandomizeTaxonOrder/ java/Mesquite_Folder.3.70/mesquite/dmanager/RandomizeTaxonOrder/RandomizeTaxonOrder.class java/Mesquite_Folder.3.70/mesquite/dmanager/ProcessFile/ java/Mesquite_Folder.3.70/mesquite/dmanager/ProcessFile/ProcessFile.class java/Mesquite_Folder.3.70/mesquite/dmanager/lib/ java/Mesquite_Folder.3.70/mesquite/dmanager/lib/ProcessDataFilesLib.class java/Mesquite_Folder.3.70/mesquite/dmanager/TaxaListImportSource/ java/Mesquite_Folder.3.70/mesquite/dmanager/TaxaListImportSource/TaxaListImportSource.class java/Mesquite_Folder.3.70/mesquite/dmanager/ProcessDataFiles/ java/Mesquite_Folder.3.70/mesquite/dmanager/ProcessDataFiles/ProcessDataFiles.class java/Mesquite_Folder.3.70/mesquite/ornamental/ java/Mesquite_Folder.3.70/mesquite/ornamental/ManageHyperlinks/ java/Mesquite_Folder.3.70/mesquite/ornamental/ManageHyperlinks/HyperlinkNexusCommandTest.class java/Mesquite_Folder.3.70/mesquite/ornamental/ManageHyperlinks/ManageHyperlinks.class java/Mesquite_Folder.3.70/mesquite/ornamental/BranchNotes/ java/Mesquite_Folder.3.70/mesquite/ornamental/BranchNotes/BranchNotesToolExtra.class java/Mesquite_Folder.3.70/mesquite/ornamental/BranchNotes/32asteriskTool.gif java/Mesquite_Folder.3.70/mesquite/ornamental/BranchNotes/asteriskBIGTool.gif java/Mesquite_Folder.3.70/mesquite/ornamental/BranchNotes/64asteriskTool.gif java/Mesquite_Folder.3.70/mesquite/ornamental/BranchNotes/BranchNotes.class java/Mesquite_Folder.3.70/mesquite/ornamental/BranchNotes/asteriskTool.gif java/Mesquite_Folder.3.70/mesquite/ornamental/aOrnamentalIntro/ java/Mesquite_Folder.3.70/mesquite/ornamental/aOrnamentalIntro/aOrnamentalIntro.class java/Mesquite_Folder.3.70/mesquite/ornamental/PictureWindowMaker/ java/Mesquite_Folder.3.70/mesquite/ornamental/PictureWindowMaker/PictureWindow.class java/Mesquite_Folder.3.70/mesquite/ornamental/PictureWindowMaker/PictureWindowMaker.class java/Mesquite_Folder.3.70/mesquite/ornamental/PictureWindowMaker/ImagePanel.class java/Mesquite_Folder.3.70/mesquite/ornamental/Projector/ java/Mesquite_Folder.3.70/mesquite/ornamental/Projector/ProjectorToolExtra.class java/Mesquite_Folder.3.70/mesquite/ornamental/Projector/64projector.gif java/Mesquite_Folder.3.70/mesquite/ornamental/Projector/projector.gif java/Mesquite_Folder.3.70/mesquite/ornamental/Projector/Projector.class java/Mesquite_Folder.3.70/mesquite/ornamental/Projector/32projector.gif java/Mesquite_Folder.3.70/mesquite/ornamental/Projector/ProjectorPanel.class java/Mesquite_Folder.3.70/mesquite/ornamental/NodePositionAdjust/ java/Mesquite_Folder.3.70/mesquite/ornamental/NodePositionAdjust/NodePositionAdjust.class java/Mesquite_Folder.3.70/mesquite/ornamental/NodePositionAdjust/32adjustPosition.gif java/Mesquite_Folder.3.70/mesquite/ornamental/NodePositionAdjust/64adjustPosition.gif java/Mesquite_Folder.3.70/mesquite/ornamental/NodePositionAdjust/PAdjustToolExtra.class java/Mesquite_Folder.3.70/mesquite/ornamental/NodePositionAdjust/adjustPosition.gif java/Mesquite_Folder.3.70/mesquite/ornamental/ManageAttachedNotes/ java/Mesquite_Folder.3.70/mesquite/ornamental/ManageAttachedNotes/ANCT.class java/Mesquite_Folder.3.70/mesquite/ornamental/ManageAttachedNotes/ManageAttachedNotes.class java/Mesquite_Folder.3.70/mesquite/ornamental/DrawTreeAssocStrings/ java/Mesquite_Folder.3.70/mesquite/ornamental/DrawTreeAssocStrings/DrawTreeAssocStrings.class java/Mesquite_Folder.3.70/mesquite/ornamental/DrawTreeAssocStrings/NodeAssocTextExtra.class java/Mesquite_Folder.3.70/mesquite/ornamental/Constellation/ java/Mesquite_Folder.3.70/mesquite/ornamental/Constellation/Constellation.class java/Mesquite_Folder.3.70/mesquite/ornamental/Constellation/ConstellationDrawing.class java/Mesquite_Folder.3.70/mesquite/ornamental/explanation.txt java/Mesquite_Folder.3.70/mesquite/ornamental/DrawTreeAssocDoubles/ java/Mesquite_Folder.3.70/mesquite/ornamental/DrawTreeAssocDoubles/DrawTreeAssocDoubles.class java/Mesquite_Folder.3.70/mesquite/ornamental/DrawTreeAssocDoubles/NodeAssocValuesExtra.class java/Mesquite_Folder.3.70/mesquite/ornamental/TaxonLink/ java/Mesquite_Folder.3.70/mesquite/ornamental/TaxonLink/TaxonLink.class java/Mesquite_Folder.3.70/mesquite/ornamental/TaxonLink/TaxonLinkToolExtra.class java/Mesquite_Folder.3.70/mesquite/ornamental/TaxonLink/64link.gif java/Mesquite_Folder.3.70/mesquite/ornamental/TaxonLink/link.gif java/Mesquite_Folder.3.70/mesquite/ornamental/TaxonLink/32link.gif java/Mesquite_Folder.3.70/mesquite/ornamental/NodeLocsOval/ java/Mesquite_Folder.3.70/mesquite/ornamental/NodeLocsOval/NodeLocsOvalExtra.class java/Mesquite_Folder.3.70/mesquite/ornamental/NodeLocsOval/DoublePt.class java/Mesquite_Folder.3.70/mesquite/ornamental/NodeLocsOval/NodeLocsOval.class java/Mesquite_Folder.3.70/mesquite/ornamental/NodeLocsCircular/ java/Mesquite_Folder.3.70/mesquite/ornamental/NodeLocsCircular/PolarCoord.class java/Mesquite_Folder.3.70/mesquite/ornamental/NodeLocsCircular/NodeLocsCircularExtra.class java/Mesquite_Folder.3.70/mesquite/ornamental/NodeLocsCircular/NodeLocsCircular.class java/Mesquite_Folder.3.70/mesquite/ornamental/NodeLocsUnrootedBasic/ java/Mesquite_Folder.3.70/mesquite/ornamental/NodeLocsUnrootedBasic/NodeLocsUnrootedBasic.class java/Mesquite_Folder.3.70/mesquite/ornamental/NodeLocsUnrootedBasic/NodeLocsUnrootedExtra.class java/Mesquite_Folder.3.70/mesquite/ornamental/UnrootedTree/ java/Mesquite_Folder.3.70/mesquite/ornamental/UnrootedTree/UnrootedTree.class java/Mesquite_Folder.3.70/mesquite/ornamental/UnrootedTree/UnrootedTreeDrawing.class java/Mesquite_Folder.3.70/mesquite/ornamental/ManagePictures/ java/Mesquite_Folder.3.70/mesquite/ornamental/ManagePictures/MPCT.class java/Mesquite_Folder.3.70/mesquite/ornamental/ManagePictures/ManagePictures.class java/Mesquite_Folder.3.70/mesquite/ornamental/NodeNumbers/ java/Mesquite_Folder.3.70/mesquite/ornamental/NodeNumbers/NodeNumbers.class java/Mesquite_Folder.3.70/mesquite/ornamental/NodeNumbers/SpotsDrawing.class java/Mesquite_Folder.3.70/mesquite/ornamental/ColorTreeByPartition/ java/Mesquite_Folder.3.70/mesquite/ornamental/ColorTreeByPartition/ColorByPartitionExtra.class java/Mesquite_Folder.3.70/mesquite/ornamental/ColorTreeByPartition/ColorTreeByPartition.class java/Mesquite_Folder.3.70/mesquite/ornamental/CircularTree/ java/Mesquite_Folder.3.70/mesquite/ornamental/CircularTree/CircularTree.class java/Mesquite_Folder.3.70/mesquite/ornamental/CircularTree/PolarCoord.class java/Mesquite_Folder.3.70/mesquite/ornamental/CircularTree/CircleTreeDrawing.class java/Mesquite_Folder.3.70/mesquite/lib/ java/Mesquite_Folder.3.70/mesquite/lib/DoubleArray.class java/Mesquite_Folder.3.70/mesquite/lib/TreeTool.class java/Mesquite_Folder.3.70/mesquite/lib/TwoStringsDialog.class java/Mesquite_Folder.3.70/mesquite/lib/ChartScrollPane.class java/Mesquite_Folder.3.70/mesquite/lib/AlertDialog.class java/Mesquite_Folder.3.70/mesquite/lib/Evaluator.class java/Mesquite_Folder.3.70/mesquite/lib/MiniScrollButton.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteInteger.class java/Mesquite_Folder.3.70/mesquite/lib/OutputFileProcessor.class java/Mesquite_Folder.3.70/mesquite/lib/ClosablePanelContainer.class java/Mesquite_Folder.3.70/mesquite/lib/TextTree.class java/Mesquite_Folder.3.70/mesquite/lib/TaxaStringsSet.class java/Mesquite_Folder.3.70/mesquite/lib/MiniStringEditor.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteTabbedPanel.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteProject.class java/Mesquite_Folder.3.70/mesquite/lib/WindowButton.class java/Mesquite_Folder.3.70/mesquite/lib/TaxaDisplayDrawnExtra.class java/Mesquite_Folder.3.70/mesquite/lib/ObjectContainer.class java/Mesquite_Folder.3.70/mesquite/lib/TextContentArea.class java/Mesquite_Folder.3.70/mesquite/lib/FunctionExplanation.class java/Mesquite_Folder.3.70/mesquite/lib/MesquitePanel.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteString.class java/Mesquite_Folder.3.70/mesquite/lib/Hyperlink.class java/Mesquite_Folder.3.70/mesquite/lib/LowLevelListener.class java/Mesquite_Folder.3.70/mesquite/lib/DoubleSqMatrixFields.class java/Mesquite_Folder.3.70/mesquite/lib/FontUtil.class java/Mesquite_Folder.3.70/mesquite/lib/InvariantsAnalysis.class java/Mesquite_Folder.3.70/mesquite/lib/ChecklistScrollPane.class java/Mesquite_Folder.3.70/mesquite/lib/ProjectReadThread.class java/Mesquite_Folder.3.70/mesquite/lib/Commandable.class java/Mesquite_Folder.3.70/mesquite/lib/MenuItemsSpecsVector.class java/Mesquite_Folder.3.70/mesquite/lib/Charter.class java/Mesquite_Folder.3.70/mesquite/lib/StringInABox.class java/Mesquite_Folder.3.70/mesquite/lib/HSWindow.class java/Mesquite_Folder.3.70/mesquite/lib/AnnotationsPanel.class java/Mesquite_Folder.3.70/mesquite/lib/HorizontalLine.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteTool.class java/Mesquite_Folder.3.70/mesquite/lib/CommandRecordHolder.class java/Mesquite_Folder.3.70/mesquite/lib/GroupLabel.class java/Mesquite_Folder.3.70/mesquite/lib/TaxaSelectionSet.class java/Mesquite_Folder.3.70/mesquite/lib/TaxaDisplayBkgdExtra.class java/Mesquite_Folder.3.70/mesquite/lib/TreeDisplayBkgdExtra.class java/Mesquite_Folder.3.70/mesquite/lib/Doomable.class java/Mesquite_Folder.3.70/mesquite/lib/KeyAdapterToConsumeKeys.class java/Mesquite_Folder.3.70/mesquite/lib/HTMLDescribable.class java/Mesquite_Folder.3.70/mesquite/lib/SymbolsVector.class java/Mesquite_Folder.3.70/mesquite/lib/simplicity/ java/Mesquite_Folder.3.70/mesquite/lib/simplicity/SimplicityStrip.class java/Mesquite_Folder.3.70/mesquite/lib/simplicity/SimplicityManagerModule.class java/Mesquite_Folder.3.70/mesquite/lib/simplicity/InterfaceManager.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteScrollbar.class java/Mesquite_Folder.3.70/mesquite/lib/DragRectangle.class java/Mesquite_Folder.3.70/mesquite/lib/MesquitePrintJob$P2.class java/Mesquite_Folder.3.70/mesquite/lib/DistanceAnalysis.class java/Mesquite_Folder.3.70/mesquite/lib/ConsoleWindow.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteFileDialog.class java/Mesquite_Folder.3.70/mesquite/lib/QueryDialogs.class java/Mesquite_Folder.3.70/mesquite/lib/OTUIDCodeInfoCoord.class java/Mesquite_Folder.3.70/mesquite/lib/ObjectSpecsSet.class java/Mesquite_Folder.3.70/mesquite/lib/ProcessUtil.class java/Mesquite_Folder.3.70/mesquite/lib/TreeContextListener.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteWindow.class java/Mesquite_Folder.3.70/mesquite/lib/OutputFilePathModifier.class java/Mesquite_Folder.3.70/mesquite/lib/WizardInfoPanel.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteDropListener.class java/Mesquite_Folder.3.70/mesquite/lib/MenuOwner.class java/Mesquite_Folder.3.70/mesquite/lib/Reconnectable.class java/Mesquite_Folder.3.70/mesquite/lib/ShellScriptUtil.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteDroppedFileHandler.class java/Mesquite_Folder.3.70/mesquite/lib/MFDThread.class java/Mesquite_Folder.3.70/mesquite/lib/Legend.class java/Mesquite_Folder.3.70/mesquite/lib/Puppeteer.class java/Mesquite_Folder.3.70/mesquite/lib/TreeDisplayLegend.class java/Mesquite_Folder.3.70/mesquite/lib/PanelOfCards.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteColorTable.class java/Mesquite_Folder.3.70/mesquite/lib/duties/ java/Mesquite_Folder.3.70/mesquite/lib/duties/TreeUtility.class java/Mesquite_Folder.3.70/mesquite/lib/duties/ExternalTreeSearcher.class java/Mesquite_Folder.3.70/mesquite/lib/duties/GeneralFileMaker.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TWindowMaker.class java/Mesquite_Folder.3.70/mesquite/lib/duties/FileAssistantCP.class java/Mesquite_Folder.3.70/mesquite/lib/duties/UtilitiesAssistant.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumberForTreeM.class java/Mesquite_Folder.3.70/mesquite/lib/duties/DistanceBetween2Trees.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumbersForNodes.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NexusFileInterpreter.class java/Mesquite_Folder.3.70/mesquite/lib/duties/ChartAssistant.class java/Mesquite_Folder.3.70/mesquite/lib/duties/BranchNamesAlterer.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TaxaPartitionSource.class java/Mesquite_Folder.3.70/mesquite/lib/duties/CellColorer.class java/Mesquite_Folder.3.70/mesquite/lib/duties/DataColumnNamesAssistant.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TreeAltererMult.class java/Mesquite_Folder.3.70/mesquite/lib/duties/CharacterSelector.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TaxaTableAssistantI.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TreeDisplayAssistantD.class java/Mesquite_Folder.3.70/mesquite/lib/duties/ItemsCharter.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumberForCharAndTaxon.class java/Mesquite_Folder.3.70/mesquite/lib/duties/EmployeeTree.class java/Mesquite_Folder.3.70/mesquite/lib/duties/ParametersExplorer.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumberForTaxonIncr.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TreeWindowAssistantC.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TextDisplayer.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumberForItem.class java/Mesquite_Folder.3.70/mesquite/lib/duties/ReadFileFromString.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TaxaWindowAssistantC.class java/Mesquite_Folder.3.70/mesquite/lib/duties/BooleanForTreeIncr.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TreeInferer.class java/Mesquite_Folder.3.70/mesquite/lib/duties/CharMatrixManager.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NodeLocsUnrooted.class java/Mesquite_Folder.3.70/mesquite/lib/duties/CharSubmodelCurator.class java/Mesquite_Folder.3.70/mesquite/lib/duties/CharacterSimulator.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TreeWindowAssistantA.class java/Mesquite_Folder.3.70/mesquite/lib/duties/CharMatrixFiller.class java/Mesquite_Folder.3.70/mesquite/lib/duties/MatrixCharter.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumberFor2Taxa.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NodeChooser.class java/Mesquite_Folder.3.70/mesquite/lib/duties/BooleanForTaxon.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TreeInfoPanelAssistant.class java/Mesquite_Folder.3.70/mesquite/lib/duties/BooleanForTreeM.class java/Mesquite_Folder.3.70/mesquite/lib/duties/FileInitEarlyLoad.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TreeSwapper.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TaxaWindowMaker.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TSrcCompatibilityTest.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TreeSimulate.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TreeDisplayAssistantAO.class java/Mesquite_Folder.3.70/mesquite/lib/duties/CharTableAssistantI.class java/Mesquite_Folder.3.70/mesquite/lib/duties/CharSelectCoordinator.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumberFor2Trees.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TaxaSelectCoordinator.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TaxaManager.class java/Mesquite_Folder.3.70/mesquite/lib/duties/EditRawNexusBlock.class java/Mesquite_Folder.3.70/mesquite/lib/duties/MatrixInfoPanelAssistant.class java/Mesquite_Folder.3.70/mesquite/lib/duties/DisplayCharsStsAtNodes.class java/Mesquite_Folder.3.70/mesquite/lib/duties/FileAssistantCH.class java/Mesquite_Folder.3.70/mesquite/lib/duties/FileAssistantCS.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TaxonPairSource.class java/Mesquite_Folder.3.70/mesquite/lib/duties/DisplayNumbersAtNodes.class java/Mesquite_Folder.3.70/mesquite/lib/duties/MatrixSourceCoord.class java/Mesquite_Folder.3.70/mesquite/lib/duties/CharSourceCoord.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NEXUSInterpreter.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumberFor2Characters.class java/Mesquite_Folder.3.70/mesquite/lib/duties/CharMatrixSource.class java/Mesquite_Folder.3.70/mesquite/lib/duties/PackageIntro.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TaxaSource.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TraceCharacterInit.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TreeTransformer.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumberForCharAndTreeM.class java/Mesquite_Folder.3.70/mesquite/lib/duties/CharSpecsSetManager.class java/Mesquite_Folder.3.70/mesquite/lib/duties/ModelsetNexusCommandTest.class java/Mesquite_Folder.3.70/mesquite/lib/duties/FileProcessor.class java/Mesquite_Folder.3.70/mesquite/lib/duties/SpecsSetManager.class java/Mesquite_Folder.3.70/mesquite/lib/duties/CellColorerTaxa.class java/Mesquite_Folder.3.70/mesquite/lib/duties/FileAssistantC.class java/Mesquite_Folder.3.70/mesquite/lib/duties/DisplayStatesAtNodes.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TreeTransformerMult.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumberForTreeBlock.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumForCharTreeIndep.class java/Mesquite_Folder.3.70/mesquite/lib/duties/StringMatcher.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TreeSearcher.class java/Mesquite_Folder.3.70/mesquite/lib/duties/DataAlterer.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TaxaWindowAssistant.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumberForMatrix.class java/Mesquite_Folder.3.70/mesquite/lib/duties/ScriptingManager.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TaxaDisplayAssistantI.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumberForTreeIncr.class java/Mesquite_Folder.3.70/mesquite/lib/duties/WholeCharModelCurator.class java/Mesquite_Folder.3.70/mesquite/lib/duties/PackageIntroInterface.class java/Mesquite_Folder.3.70/mesquite/lib/duties/CharMapper.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumberForTaxaBlock.class java/Mesquite_Folder.3.70/mesquite/lib/duties/BranchLengthsAlterer.class java/Mesquite_Folder.3.70/mesquite/lib/duties/CellColorerCharacters.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TreesManager.class java/Mesquite_Folder.3.70/mesquite/lib/duties/DrawNamesTreeDisplay.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TreeDisplayAssistantA.class java/Mesquite_Folder.3.70/mesquite/lib/duties/CharStatesForNodes.class java/Mesquite_Folder.3.70/mesquite/lib/duties/DrawTreeCoordinator.class java/Mesquite_Folder.3.70/mesquite/lib/duties/FileAssistantA.class java/Mesquite_Folder.3.70/mesquite/lib/duties/WindowHolder.class java/Mesquite_Folder.3.70/mesquite/lib/duties/DataWindowAssistantA.class java/Mesquite_Folder.3.70/mesquite/lib/duties/BooleanForTree.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TreeSourceDefinite.class java/Mesquite_Folder.3.70/mesquite/lib/duties/CharModelCurator.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumberForTaxon.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TaxaWindowAssistantN.class java/Mesquite_Folder.3.70/mesquite/lib/duties/ItemsSource.class java/Mesquite_Folder.3.70/mesquite/lib/duties/DataWindowAssistant.class java/Mesquite_Folder.3.70/mesquite/lib/duties/FileInterpreterI.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TreeWindowAssistantN.class java/Mesquite_Folder.3.70/mesquite/lib/duties/FileAssistantM.class java/Mesquite_Folder.3.70/mesquite/lib/duties/DataMatcher.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumberFor2TaxaIncr.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TreeWindowAssistantOA.class java/Mesquite_Folder.3.70/mesquite/lib/duties/CharMatrixOneSource.class java/Mesquite_Folder.3.70/mesquite/lib/duties/DrawTaxaCoordinator.class java/Mesquite_Folder.3.70/mesquite/lib/duties/ElementManager.class java/Mesquite_Folder.3.70/mesquite/lib/duties/DrawTree.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TreeDisplayAssistantDI.class java/Mesquite_Folder.3.70/mesquite/lib/duties/HistogramAssistantA.class java/Mesquite_Folder.3.70/mesquite/lib/duties/ManagerAssistant.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NodeLocsPlot.class java/Mesquite_Folder.3.70/mesquite/lib/duties/BranchLengthsAltererMult.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NodeLocsVH.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumberForCharacter.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumberForNode.class java/Mesquite_Folder.3.70/mesquite/lib/duties/CharacterObedSource.class java/Mesquite_Folder.3.70/mesquite/lib/duties/FileAssistantT.class java/Mesquite_Folder.3.70/mesquite/lib/duties/DataSearcher.class java/Mesquite_Folder.3.70/mesquite/lib/duties/BooleanForItem.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumberForMatrixAndTree.class java/Mesquite_Folder.3.70/mesquite/lib/duties/DataWindowMaker.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NodeLocsCircle.class java/Mesquite_Folder.3.70/mesquite/lib/duties/CharacterSource.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TreeDisplayAssistantMA.class java/Mesquite_Folder.3.70/mesquite/lib/duties/DrawChart.class java/Mesquite_Folder.3.70/mesquite/lib/duties/CharacterOneSource.class java/Mesquite_Folder.3.70/mesquite/lib/duties/BrowseHierarchy.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumberFor2CharAndTree.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumbersForNodesAndMatrix.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TreeBlockFiller.class java/Mesquite_Folder.3.70/mesquite/lib/duties/FileInterpreterITree.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumberArrayForMatrix.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TaxonSelector.class java/Mesquite_Folder.3.70/mesquite/lib/duties/CharsStatesForNodes.class java/Mesquite_Folder.3.70/mesquite/lib/duties/DataWSelectionAssistant.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TaxaDisplayAssistantA.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumbersForNodesAndChar.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TaxaDisplayAssistantAD.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumberForCharacterIncr.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TreeAlterer.class java/Mesquite_Folder.3.70/mesquite/lib/duties/CuratorWithSettings.class java/Mesquite_Folder.3.70/mesquite/lib/duties/OneTreeSource.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TaxonUtility.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TreeDisplayAssistantI.class java/Mesquite_Folder.3.70/mesquite/lib/duties/CharSourceCoordObed.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TreeWindowMaker.class java/Mesquite_Folder.3.70/mesquite/lib/duties/CharacterModelSource.class java/Mesquite_Folder.3.70/mesquite/lib/duties/DataWindowAssistantI.class java/Mesquite_Folder.3.70/mesquite/lib/duties/FileCoordinator.class java/Mesquite_Folder.3.70/mesquite/lib/duties/MesquiteInit.class java/Mesquite_Folder.3.70/mesquite/lib/duties/DataWindowAssistantID.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TaxonNameStyler.class java/Mesquite_Folder.3.70/mesquite/lib/duties/ItemsBiplotter.class java/Mesquite_Folder.3.70/mesquite/lib/duties/FileInit.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TaxaDisplayAssistantD.class java/Mesquite_Folder.3.70/mesquite/lib/duties/DataUtility.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumberForCharAndTree.class java/Mesquite_Folder.3.70/mesquite/lib/duties/FileAssistant.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TreeBlockSource.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TaxaDisplayAssistantMA.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumberForTree.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TreeDisplayAssistantAD.class java/Mesquite_Folder.3.70/mesquite/lib/duties/ManageModelSet.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TaxaDisplayAssistant.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TreeDisplayAssistant.class java/Mesquite_Folder.3.70/mesquite/lib/duties/FileAssistantN.class java/Mesquite_Folder.3.70/mesquite/lib/duties/BranchNamesAltererMult.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumbersForNodesAndHistory.class java/Mesquite_Folder.3.70/mesquite/lib/duties/BooleanForCharacter.class java/Mesquite_Folder.3.70/mesquite/lib/duties/CellColorerMatrix.class java/Mesquite_Folder.3.70/mesquite/lib/duties/CharactersManager.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumFor2CharHistAndTree.class java/Mesquite_Folder.3.70/mesquite/lib/duties/FileInterpreter.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TaxonNameAlterer.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TreeWindowAssistant.class java/Mesquite_Folder.3.70/mesquite/lib/duties/DataAltererCon.class java/Mesquite_Folder.3.70/mesquite/lib/duties/EditingCurator.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumberForTreeWContext.class java/Mesquite_Folder.3.70/mesquite/lib/duties/ScattergramAssistantA.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TreeWDIAssistant.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TreeSource.class java/Mesquite_Folder.3.70/mesquite/lib/duties/DrawNamesTaxaDisplay.class java/Mesquite_Folder.3.70/mesquite/lib/duties/FileElementManager.class java/Mesquite_Folder.3.70/mesquite/lib/duties/CharHistorySource.class java/Mesquite_Folder.3.70/mesquite/lib/duties/CharMatrixObedSource.class java/Mesquite_Folder.3.70/mesquite/lib/duties/MatrixInfoPanelAssistantI.class java/Mesquite_Folder.3.70/mesquite/lib/duties/DefaultsAssistant.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumForCharTreeDep.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumbersForNodesWith2Char.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumForCharHistAndTree.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TaxaWindowAssistantI.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TaxaDisplayAssistantDI.class java/Mesquite_Folder.3.70/mesquite/lib/duties/Consenser.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TreeWindowAssistantI.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NumbersForNodesIncr.class java/Mesquite_Folder.3.70/mesquite/lib/duties/MatrixSourceCoordObed.class java/Mesquite_Folder.3.70/mesquite/lib/duties/TaxonSource.class java/Mesquite_Folder.3.70/mesquite/lib/duties/DrawTaxa.class java/Mesquite_Folder.3.70/mesquite/lib/duties/IncrementalConsenser.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NodeLocsFree.class java/Mesquite_Folder.3.70/mesquite/lib/duties/NodeLocs.class java/Mesquite_Folder.3.70/mesquite/lib/duties/AnalyticalDrawTree.class java/Mesquite_Folder.3.70/mesquite/lib/ExtraPanelHTMLWindow.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteXMLPreferencesModule.class java/Mesquite_Folder.3.70/mesquite/lib/ShortArray.class java/Mesquite_Folder.3.70/mesquite/lib/LikelihoodAnalysis.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteTimer.class java/Mesquite_Folder.3.70/mesquite/lib/EnterButton.class java/Mesquite_Folder.3.70/mesquite/lib/ProjectRead.class java/Mesquite_Folder.3.70/mesquite/lib/KIListener.class java/Mesquite_Folder.3.70/mesquite/lib/TwoIntegersDialog.class java/Mesquite_Folder.3.70/mesquite/lib/MDPHelperThread.class java/Mesquite_Folder.3.70/mesquite/lib/ThermoPanel.class java/Mesquite_Folder.3.70/mesquite/lib/RoundCapStroke.class java/Mesquite_Folder.3.70/mesquite/lib/ExplanationControl.class java/Mesquite_Folder.3.70/mesquite/lib/BooleanUtil.class java/Mesquite_Folder.3.70/mesquite/lib/ContentSideContainer.class java/Mesquite_Folder.3.70/mesquite/lib/Attachable.class java/Mesquite_Folder.3.70/mesquite/lib/BitsSpecsSet.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteTabbedPane.class java/Mesquite_Folder.3.70/mesquite/lib/FileElement.class java/Mesquite_Folder.3.70/mesquite/lib/LegendHolder.class java/Mesquite_Folder.3.70/mesquite/lib/ImagePanelListener.class java/Mesquite_Folder.3.70/mesquite/lib/CommandCommunicator.class java/Mesquite_Folder.3.70/mesquite/lib/CardPanel.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteSet.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteImage.class java/Mesquite_Folder.3.70/mesquite/lib/MesquitePath2DFloat.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteSymbol.class java/Mesquite_Folder.3.70/mesquite/lib/TaxonPair.class java/Mesquite_Folder.3.70/mesquite/lib/PuppetThread.class java/Mesquite_Folder.3.70/mesquite/lib/Listened.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteFrame$MWCE.class java/Mesquite_Folder.3.70/mesquite/lib/UndoReference.class java/Mesquite_Folder.3.70/mesquite/lib/ClosablePanel.class java/Mesquite_Folder.3.70/mesquite/lib/ChecklistBox.class java/Mesquite_Folder.3.70/mesquite/lib/MesquitePrintJob$P2Text.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteExternalProcess.class java/Mesquite_Folder.3.70/mesquite/lib/NexusBlockTest.class java/Mesquite_Folder.3.70/mesquite/lib/MainThread.class java/Mesquite_Folder.3.70/mesquite/lib/LinearValueToPixel.class java/Mesquite_Folder.3.70/mesquite/lib/ContentArea.class java/Mesquite_Folder.3.70/mesquite/lib/OtherAnalysis.class java/Mesquite_Folder.3.70/mesquite/lib/AlertWithLinkToDirectory.class java/Mesquite_Folder.3.70/mesquite/lib/MiniControl.class java/Mesquite_Folder.3.70/mesquite/lib/DatabaseURLSource.class java/Mesquite_Folder.3.70/mesquite/lib/MiniScroll.class java/Mesquite_Folder.3.70/mesquite/lib/NameReference.class java/Mesquite_Folder.3.70/mesquite/lib/AttachedNote.class java/Mesquite_Folder.3.70/mesquite/lib/ChangeEvent.class java/Mesquite_Folder.3.70/mesquite/lib/TaxaGroup.class java/Mesquite_Folder.3.70/mesquite/lib/ExponentialDistribution.class java/Mesquite_Folder.3.70/mesquite/lib/Long2DArray.class java/Mesquite_Folder.3.70/mesquite/lib/CommandRecord.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteFrame$MWWE.class java/Mesquite_Folder.3.70/mesquite/lib/Binomial.class java/Mesquite_Folder.3.70/mesquite/lib/ChartScroll.class java/Mesquite_Folder.3.70/mesquite/lib/HelpSearchManager.class java/Mesquite_Folder.3.70/mesquite/lib/Object2DArray.class java/Mesquite_Folder.3.70/mesquite/lib/CRecord.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteButton.class java/Mesquite_Folder.3.70/mesquite/lib/Prioritizable.class java/Mesquite_Folder.3.70/mesquite/lib/PopUpPanel.class java/Mesquite_Folder.3.70/mesquite/lib/CleanUpJob.class java/Mesquite_Folder.3.70/mesquite/lib/ZipUtil.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteDialog.class java/Mesquite_Folder.3.70/mesquite/lib/ExtensibleDialog$ConstrJEP.class java/Mesquite_Folder.3.70/mesquite/lib/TreeContext.class java/Mesquite_Folder.3.70/mesquite/lib/FillableMesquiteSymbol.class java/Mesquite_Folder.3.70/mesquite/lib/TreeDisplayExtra.class java/Mesquite_Folder.3.70/mesquite/lib/ColorRecord.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteLong.class java/Mesquite_Folder.3.70/mesquite/lib/LeakFinder.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteMenuSpec.class java/Mesquite_Folder.3.70/mesquite/lib/TreeDecorator.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteLabel.class java/Mesquite_Folder.3.70/mesquite/lib/ParsimonyAnalysis.class java/Mesquite_Folder.3.70/mesquite/lib/Snapshot.class java/Mesquite_Folder.3.70/mesquite/lib/DropObjectR.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteSubmenuSpec.class java/Mesquite_Folder.3.70/mesquite/lib/Integer2DArray.class java/Mesquite_Folder.3.70/mesquite/lib/ParametersDialog.class java/Mesquite_Folder.3.70/mesquite/lib/DoubleField.class java/Mesquite_Folder.3.70/mesquite/lib/StringIntegerDialog.class java/Mesquite_Folder.3.70/mesquite/lib/FileBlock.class java/Mesquite_Folder.3.70/mesquite/lib/Logger.class java/Mesquite_Folder.3.70/mesquite/lib/PopUpPanelOfCards.class java/Mesquite_Folder.3.70/mesquite/lib/ColorPickerPanel.class java/Mesquite_Folder.3.70/mesquite/lib/SpecsSetVector.class java/Mesquite_Folder.3.70/mesquite/lib/Disposable.class java/Mesquite_Folder.3.70/mesquite/lib/ImageOwner.class java/Mesquite_Folder.3.70/mesquite/lib/Explainable.class java/Mesquite_Folder.3.70/mesquite/lib/AnnotPanelOwner.class java/Mesquite_Folder.3.70/mesquite/lib/FileDirtier.class java/Mesquite_Folder.3.70/mesquite/lib/ObjectR.class java/Mesquite_Folder.3.70/mesquite/lib/Mesquite3DIntPoint.class java/Mesquite_Folder.3.70/mesquite/lib/NexusCommandTest.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteEvent.class java/Mesquite_Folder.3.70/mesquite/lib/OutputTextListener.class java/Mesquite_Folder.3.70/mesquite/lib/TreeVector.class java/Mesquite_Folder.3.70/mesquite/lib/ResizableLegend.class java/Mesquite_Folder.3.70/mesquite/lib/AssociableWithSpecs.class java/Mesquite_Folder.3.70/mesquite/lib/ContentLedgeContainer.class java/Mesquite_Folder.3.70/mesquite/lib/ChartField.class java/Mesquite_Folder.3.70/mesquite/lib/SeparateThreadStorage.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteDouble.class java/Mesquite_Folder.3.70/mesquite/lib/Optimizer.class java/Mesquite_Folder.3.70/mesquite/lib/ExtensibleListDialog.class java/Mesquite_Folder.3.70/mesquite/lib/ChartTool.class java/Mesquite_Folder.3.70/mesquite/lib/TaxaTool.class java/Mesquite_Folder.3.70/mesquite/lib/CalculationMonitor.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteCheckMenuItem.class java/Mesquite_Folder.3.70/mesquite/lib/ColorEvent.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteModule.class java/Mesquite_Folder.3.70/mesquite/lib/Author.class java/Mesquite_Folder.3.70/mesquite/lib/AutoSavedLister.class java/Mesquite_Folder.3.70/mesquite/lib/WithStringDetails.class java/Mesquite_Folder.3.70/mesquite/lib/LightLabelsAtNodes.class java/Mesquite_Folder.3.70/mesquite/lib/ColorDialog.class java/Mesquite_Folder.3.70/mesquite/lib/InterContentArea.class java/Mesquite_Folder.3.70/mesquite/lib/MesquitePrintJob.class java/Mesquite_Folder.3.70/mesquite/lib/MessagePanel.class java/Mesquite_Folder.3.70/mesquite/lib/Listenable.class java/Mesquite_Folder.3.70/mesquite/lib/DialogListener.class java/Mesquite_Folder.3.70/mesquite/lib/MDPanel.class java/Mesquite_Folder.3.70/mesquite/lib/TextCanvasWithButtons.class java/Mesquite_Folder.3.70/mesquite/lib/Number2DArray.class java/Mesquite_Folder.3.70/mesquite/lib/MiniSliderWithText.class java/Mesquite_Folder.3.70/mesquite/lib/TreeDisplay.class java/Mesquite_Folder.3.70/mesquite/lib/ClassVector.class java/Mesquite_Folder.3.70/mesquite/lib/ObjectCommenter.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteCursor.class java/Mesquite_Folder.3.70/mesquite/lib/TreeDrawing.class java/Mesquite_Folder.3.70/mesquite/lib/InfoBar.class java/Mesquite_Folder.3.70/mesquite/lib/MesquitePackageRecord.class java/Mesquite_Folder.3.70/mesquite/lib/PanelsAtNodes.class java/Mesquite_Folder.3.70/mesquite/lib/ETContentArea.class java/Mesquite_Folder.3.70/mesquite/lib/Arguments.class java/Mesquite_Folder.3.70/mesquite/lib/ProjPanelPanel.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteBoolean.class java/Mesquite_Folder.3.70/mesquite/lib/ExtensibleExplDialog.class java/Mesquite_Folder.3.70/mesquite/lib/MesquitePDFFile.class java/Mesquite_Folder.3.70/mesquite/lib/OwnedByModule.class java/Mesquite_Folder.3.70/mesquite/lib/CommandableOwner.class java/Mesquite_Folder.3.70/mesquite/lib/TaxaPartition.class java/Mesquite_Folder.3.70/mesquite/lib/TCMPanel.class java/Mesquite_Folder.3.70/mesquite/lib/CircleSymbol.class java/Mesquite_Folder.3.70/mesquite/lib/StandardOutputsStreamReader.class java/Mesquite_Folder.3.70/mesquite/lib/BetweenPanel.class java/Mesquite_Folder.3.70/mesquite/lib/Context.class java/Mesquite_Folder.3.70/mesquite/lib/LabelsAtNodes.class java/Mesquite_Folder.3.70/mesquite/lib/ProgressWindow.class java/Mesquite_Folder.3.70/mesquite/lib/NexusWritable.class java/Mesquite_Folder.3.70/mesquite/lib/ListDialog.class java/Mesquite_Folder.3.70/mesquite/lib/SingleLineTextArea.class java/Mesquite_Folder.3.70/mesquite/lib/SpecsSet.class java/Mesquite_Folder.3.70/mesquite/lib/ObjectArray.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteMenu.class java/Mesquite_Folder.3.70/mesquite/lib/ExporterDialog.class java/Mesquite_Folder.3.70/mesquite/lib/ButtonWaitThread.class java/Mesquite_Folder.3.70/mesquite/lib/Priority.class java/Mesquite_Folder.3.70/mesquite/lib/system/ java/Mesquite_Folder.3.70/mesquite/lib/system/SystemUtil.class java/Mesquite_Folder.3.70/mesquite/lib/Journal.class java/Mesquite_Folder.3.70/mesquite/lib/EnglishDecimalFormatSymbols.class java/Mesquite_Folder.3.70/mesquite/lib/NexusBlockEditableRaw.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteListTable.class java/Mesquite_Folder.3.70/mesquite/lib/ChartListener.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteFileUtil.class java/Mesquite_Folder.3.70/mesquite/lib/ImageHeaderPanel.class java/Mesquite_Folder.3.70/mesquite/lib/FunctionExplainable.class java/Mesquite_Folder.3.70/mesquite/lib/OutputFileListener.class java/Mesquite_Folder.3.70/mesquite/lib/PendingCommand.class java/Mesquite_Folder.3.70/mesquite/lib/PoCPanel.class java/Mesquite_Folder.3.70/mesquite/lib/LogValueToPixel.class java/Mesquite_Folder.3.70/mesquite/lib/ColorTheme.class java/Mesquite_Folder.3.70/mesquite/lib/CommandChecker.class java/Mesquite_Folder.3.70/mesquite/lib/PhoneHomeRecord.class java/Mesquite_Folder.3.70/mesquite/lib/ParametersExplorable.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteCollator.class java/Mesquite_Folder.3.70/mesquite/lib/AttachedNotesVector.class java/Mesquite_Folder.3.70/mesquite/lib/DoubleClickList.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteMenuItem.class java/Mesquite_Folder.3.70/mesquite/lib/Double2DArray.class java/Mesquite_Folder.3.70/mesquite/lib/ColorEventVector.class java/Mesquite_Folder.3.70/mesquite/lib/ControlP.class java/Mesquite_Folder.3.70/mesquite/lib/ExtensibleDialog.class java/Mesquite_Folder.3.70/mesquite/lib/CurrentColorPanel.class java/Mesquite_Folder.3.70/mesquite/lib/table/ java/Mesquite_Folder.3.70/mesquite/lib/table/TableMarchingAnts.class java/Mesquite_Folder.3.70/mesquite/lib/table/EditorTextField$FListener.class java/Mesquite_Folder.3.70/mesquite/lib/table/MesquiteTable.class java/Mesquite_Folder.3.70/mesquite/lib/table/CMTable.class java/Mesquite_Folder.3.70/mesquite/lib/table/TableScroll.class java/Mesquite_Folder.3.70/mesquite/lib/table/EditorTextField$KListener.class java/Mesquite_Folder.3.70/mesquite/lib/table/EditorPanel.class java/Mesquite_Folder.3.70/mesquite/lib/table/EditorTextField.class java/Mesquite_Folder.3.70/mesquite/lib/table/AutoScrollThread.class java/Mesquite_Folder.3.70/mesquite/lib/table/RowNamesPanel.class java/Mesquite_Folder.3.70/mesquite/lib/table/MatrixPanel.class java/Mesquite_Folder.3.70/mesquite/lib/table/ColumnNamesPanel.class java/Mesquite_Folder.3.70/mesquite/lib/table/CornerPanel.class java/Mesquite_Folder.3.70/mesquite/lib/table/TableTool.class java/Mesquite_Folder.3.70/mesquite/lib/table/ControlStrip.class java/Mesquite_Folder.3.70/mesquite/lib/table/TableWindow.class java/Mesquite_Folder.3.70/mesquite/lib/SelectionRectangle.class java/Mesquite_Folder.3.70/mesquite/lib/Debugg.class java/Mesquite_Folder.3.70/mesquite/lib/HPanel.class java/Mesquite_Folder.3.70/mesquite/lib/Identifiable.class java/Mesquite_Folder.3.70/mesquite/lib/UserNamePasswordDialog.class java/Mesquite_Folder.3.70/mesquite/lib/ModulesInfoVector.class java/Mesquite_Folder.3.70/mesquite/lib/BannerPanel.class java/Mesquite_Folder.3.70/mesquite/lib/ChecklistDialog.class java/Mesquite_Folder.3.70/mesquite/lib/Incrementable.class java/Mesquite_Folder.3.70/mesquite/lib/MesquitePopup.class java/Mesquite_Folder.3.70/mesquite/lib/HTMLSidePanel.class java/Mesquite_Folder.3.70/mesquite/lib/MDConsoleShowThread.class java/Mesquite_Folder.3.70/mesquite/lib/Associable.class java/Mesquite_Folder.3.70/mesquite/lib/SpecialListName.class java/Mesquite_Folder.3.70/mesquite/lib/TaxaBlock.class java/Mesquite_Folder.3.70/mesquite/lib/HNode.class java/Mesquite_Folder.3.70/mesquite/lib/MDPShowThread.class java/Mesquite_Folder.3.70/mesquite/lib/Clades.class java/Mesquite_Folder.3.70/mesquite/lib/LongField.class java/Mesquite_Folder.3.70/mesquite/lib/ChartExtra.class java/Mesquite_Folder.3.70/mesquite/lib/Clade.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteTextCanvas.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteSubmenu.class java/Mesquite_Folder.3.70/mesquite/lib/ImageLabel.class java/Mesquite_Folder.3.70/mesquite/lib/ClockPanel.class java/Mesquite_Folder.3.70/mesquite/lib/XMLPreferencesProcessor.class java/Mesquite_Folder.3.70/mesquite/lib/AntMarcher.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteTextWindow.class java/Mesquite_Folder.3.70/mesquite/lib/PropertyNamesProvider.class java/Mesquite_Folder.3.70/mesquite/lib/Projects.class java/Mesquite_Folder.3.70/mesquite/lib/QualificationsTest.class java/Mesquite_Folder.3.70/mesquite/lib/DoubleSliderWindow.class java/Mesquite_Folder.3.70/mesquite/lib/Tree.class java/Mesquite_Folder.3.70/mesquite/lib/MenuVisibility.class java/Mesquite_Folder.3.70/mesquite/lib/XMLUtil.class java/Mesquite_Folder.3.70/mesquite/lib/SimpleNamesTaxonNamer.class java/Mesquite_Folder.3.70/mesquite/lib/TreeReference.class java/Mesquite_Folder.3.70/mesquite/lib/ProgressIndicator.class java/Mesquite_Folder.3.70/mesquite/lib/ShellScriptRunner.class java/Mesquite_Folder.3.70/mesquite/lib/TaxaDisplayActive.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteException.class java/Mesquite_Folder.3.70/mesquite/lib/ChangeHistory.class java/Mesquite_Folder.3.70/mesquite/lib/ShellScriptWatcher.class java/Mesquite_Folder.3.70/mesquite/lib/IntegerField.class java/Mesquite_Folder.3.70/mesquite/lib/Notification.class java/Mesquite_Folder.3.70/mesquite/lib/ListableVector.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteMenuBar.class java/Mesquite_Folder.3.70/mesquite/lib/DoubleMiniScroll.class java/Mesquite_Folder.3.70/mesquite/lib/WaitPanel.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteListener.class java/Mesquite_Folder.3.70/mesquite/lib/PhoneHomeUtil.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteMacro.class java/Mesquite_Folder.3.70/mesquite/lib/OTUIDCodeInfoSource.class java/Mesquite_Folder.3.70/mesquite/lib/ProgressWindowThread.class java/Mesquite_Folder.3.70/mesquite/lib/SystemWindow.class java/Mesquite_Folder.3.70/mesquite/lib/EmployeeNeed.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteThread.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteNumber.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteModuleInfo.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteFrame.class java/Mesquite_Folder.3.70/mesquite/lib/OuterContentArea.class java/Mesquite_Folder.3.70/mesquite/lib/OutputFileTailer.class java/Mesquite_Folder.3.70/mesquite/lib/VoucherInfoFromOTUIDDB.class java/Mesquite_Folder.3.70/mesquite/lib/ProgressPanel.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteHTMLWindow.class java/Mesquite_Folder.3.70/mesquite/lib/NumSpecsSet.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteFile.class java/Mesquite_Folder.3.70/mesquite/lib/SimpleIntegerField.class java/Mesquite_Folder.3.70/mesquite/lib/ChangeAuthority.class java/Mesquite_Folder.3.70/mesquite/lib/StringIntegerListDlog.class java/Mesquite_Folder.3.70/mesquite/lib/DoubleClickListener.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteCMenuItemSpec.class java/Mesquite_Folder.3.70/mesquite/lib/InfoPanel.class java/Mesquite_Folder.3.70/mesquite/lib/Short2DArray.class java/Mesquite_Folder.3.70/mesquite/lib/StringArray.class java/Mesquite_Folder.3.70/mesquite/lib/WorkaroundThread.class java/Mesquite_Folder.3.70/mesquite/lib/ExplanationArea.class java/Mesquite_Folder.3.70/mesquite/lib/CompatibilityChecker.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteMessage.class java/Mesquite_Folder.3.70/mesquite/lib/StringLister.class java/Mesquite_Folder.3.70/mesquite/lib/MiniSlider.class java/Mesquite_Folder.3.70/mesquite/lib/ModuleInfoWindow.class java/Mesquite_Folder.3.70/mesquite/lib/ChartBkgdExtra.class java/Mesquite_Folder.3.70/mesquite/lib/Selectionable.class java/Mesquite_Folder.3.70/mesquite/lib/UndoInstructions.class java/Mesquite_Folder.3.70/mesquite/lib/MesquitePasswordField.class java/Mesquite_Folder.3.70/mesquite/lib/TreeDisplayDrawnExtra.class java/Mesquite_Folder.3.70/mesquite/lib/ValueToPixel.class java/Mesquite_Folder.3.70/mesquite/lib/GraphicsUtil.class java/Mesquite_Folder.3.70/mesquite/lib/EnterTextField.class java/Mesquite_Folder.3.70/mesquite/lib/TaxaTreeDisplay.class java/Mesquite_Folder.3.70/mesquite/lib/TreeUtil.class java/Mesquite_Folder.3.70/mesquite/lib/Renamable.class java/Mesquite_Folder.3.70/mesquite/lib/characters/ java/Mesquite_Folder.3.70/mesquite/lib/characters/AlteredDataParameters.class java/Mesquite_Folder.3.70/mesquite/lib/characters/ModelVector.class java/Mesquite_Folder.3.70/mesquite/lib/characters/CharacterStates.class java/Mesquite_Folder.3.70/mesquite/lib/characters/ModelSet.class java/Mesquite_Folder.3.70/mesquite/lib/characters/CodonPositionsSet.class java/Mesquite_Folder.3.70/mesquite/lib/characters/StoredCharacterHistory.class java/Mesquite_Folder.3.70/mesquite/lib/characters/CharObjectSpecsSet.class java/Mesquite_Folder.3.70/mesquite/lib/characters/AltererConvertGapMissPolyUncert.class java/Mesquite_Folder.3.70/mesquite/lib/characters/CharNumSet.class java/Mesquite_Folder.3.70/mesquite/lib/characters/CharactersBlock.class java/Mesquite_Folder.3.70/mesquite/lib/characters/DefaultReference.class java/Mesquite_Folder.3.70/mesquite/lib/characters/CharWeightSet.class java/Mesquite_Folder.3.70/mesquite/lib/characters/CharSpecsSet.class java/Mesquite_Folder.3.70/mesquite/lib/characters/MAdjustableDistribution.class java/Mesquite_Folder.3.70/mesquite/lib/characters/CLikelihoodCalculator.class java/Mesquite_Folder.3.70/mesquite/lib/characters/CharacterStateTest.class java/Mesquite_Folder.3.70/mesquite/lib/characters/AltererWholeCharacterAddRemove.class java/Mesquite_Folder.3.70/mesquite/lib/characters/CharacterData.class java/Mesquite_Folder.3.70/mesquite/lib/characters/CharSelectionSet.class java/Mesquite_Folder.3.70/mesquite/lib/characters/CharacterDistribution.class java/Mesquite_Folder.3.70/mesquite/lib/characters/ProbabilityModelSet.class java/Mesquite_Folder.3.70/mesquite/lib/characters/MCharactersDistribution.class java/Mesquite_Folder.3.70/mesquite/lib/characters/CellBlock.class java/Mesquite_Folder.3.70/mesquite/lib/characters/TaxaInfo.class java/Mesquite_Folder.3.70/mesquite/lib/characters/AdjustableDistribution.class java/Mesquite_Folder.3.70/mesquite/lib/characters/SlicedCharacterHistory.class java/Mesquite_Folder.3.70/mesquite/lib/characters/CharSort.class java/Mesquite_Folder.3.70/mesquite/lib/characters/AltererContinuousTransformations.class java/Mesquite_Folder.3.70/mesquite/lib/characters/MCharactersStates.class java/Mesquite_Folder.3.70/mesquite/lib/characters/CharInclusionSet.class java/Mesquite_Folder.3.70/mesquite/lib/characters/CharacterModel.class java/Mesquite_Folder.3.70/mesquite/lib/characters/MCharactersHistory.class java/Mesquite_Folder.3.70/mesquite/lib/characters/CharactersGroupVector.class java/Mesquite_Folder.3.70/mesquite/lib/characters/ModelCompatibilityInfo.class java/Mesquite_Folder.3.70/mesquite/lib/characters/WholeCharacterModel.class java/Mesquite_Folder.3.70/mesquite/lib/characters/CharacterHistory.class java/Mesquite_Folder.3.70/mesquite/lib/characters/ProbabilityModel.class java/Mesquite_Folder.3.70/mesquite/lib/characters/CharacterPartition.class java/Mesquite_Folder.3.70/mesquite/lib/characters/CharacterStatesHolder.class java/Mesquite_Folder.3.70/mesquite/lib/characters/MCharactersStatesHolder.class java/Mesquite_Folder.3.70/mesquite/lib/characters/AltererRandomizations.class java/Mesquite_Folder.3.70/mesquite/lib/characters/CModelEstimator.class java/Mesquite_Folder.3.70/mesquite/lib/characters/CharactersGroup.class java/Mesquite_Folder.3.70/mesquite/lib/characters/AltererSimpleCell.class java/Mesquite_Folder.3.70/mesquite/lib/characters/CentralModelListener.class java/Mesquite_Folder.3.70/mesquite/lib/characters/CharacterState.class java/Mesquite_Folder.3.70/mesquite/lib/characters/CharacterSubmodel.class java/Mesquite_Folder.3.70/mesquite/lib/characters/CharBitsSet.class java/Mesquite_Folder.3.70/mesquite/lib/characters/AltererDNACell.class java/Mesquite_Folder.3.70/mesquite/lib/characters/CharHistoryContainer.class java/Mesquite_Folder.3.70/mesquite/lib/characters/AltererAlignShift.class java/Mesquite_Folder.3.70/mesquite/lib/ExtensibleDialog$PADDThread.class java/Mesquite_Folder.3.70/mesquite/lib/Illustratable.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteTrunk.class java/Mesquite_Folder.3.70/mesquite/lib/FrameTabsPanel.class java/Mesquite_Folder.3.70/mesquite/lib/ProjPanelCommand.class java/Mesquite_Folder.3.70/mesquite/lib/TaxonFilterer.class java/Mesquite_Folder.3.70/mesquite/lib/BayesianAnalysis.class java/Mesquite_Folder.3.70/mesquite/lib/ToolKeyListener.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteMenuItemSpec.class java/Mesquite_Folder.3.70/mesquite/lib/Listable.class java/Mesquite_Folder.3.70/mesquite/lib/Parser.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteXMLUtilities.class java/Mesquite_Folder.3.70/mesquite/lib/Taxa.class java/Mesquite_Folder.3.70/mesquite/lib/Fittable.class java/Mesquite_Folder.3.70/mesquite/lib/TaxonNamer.class java/Mesquite_Folder.3.70/mesquite/lib/PathHolder.class java/Mesquite_Folder.3.70/mesquite/lib/EmployeeVector.class java/Mesquite_Folder.3.70/mesquite/lib/NexusBlock.class java/Mesquite_Folder.3.70/mesquite/lib/CompatibilityTest.class java/Mesquite_Folder.3.70/mesquite/lib/AdjustableTree.class java/Mesquite_Folder.3.70/mesquite/lib/ColorDistribution.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteChart.class java/Mesquite_Folder.3.70/mesquite/lib/IntegerArray.class java/Mesquite_Folder.3.70/mesquite/lib/Annotatable.class java/Mesquite_Folder.3.70/mesquite/lib/MesqJEditorPane.class java/Mesquite_Folder.3.70/mesquite/lib/ExternalProcessManager.class java/Mesquite_Folder.3.70/mesquite/lib/HelpSearchStrip.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteDialogParent.class java/Mesquite_Folder.3.70/mesquite/lib/DialogGraphicsPanel.class java/Mesquite_Folder.3.70/mesquite/lib/ParseUtil.class java/Mesquite_Folder.3.70/mesquite/lib/Abortable.class java/Mesquite_Folder.3.70/mesquite/lib/ExplTextArea.class java/Mesquite_Folder.3.70/mesquite/lib/RotatedRectangle.class java/Mesquite_Folder.3.70/mesquite/lib/ImagePanel.class java/Mesquite_Folder.3.70/mesquite/lib/AImagePanel.class java/Mesquite_Folder.3.70/mesquite/lib/TaxaDrawing.class java/Mesquite_Folder.3.70/mesquite/lib/SliderWindow.class java/Mesquite_Folder.3.70/mesquite/lib/TaxaGroupVector.class java/Mesquite_Folder.3.70/mesquite/lib/ChartWindow.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteDropManager.class java/Mesquite_Folder.3.70/mesquite/lib/TaxaDisplayExtra.class java/Mesquite_Folder.3.70/mesquite/lib/LogWindow.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteParameter.class java/Mesquite_Folder.3.70/mesquite/lib/CanRetrieveTreeBlock.class java/Mesquite_Folder.3.70/mesquite/lib/TaxaDisplay.class java/Mesquite_Folder.3.70/mesquite/lib/TreeDisplayActive.class java/Mesquite_Folder.3.70/mesquite/lib/Trees.class java/Mesquite_Folder.3.70/mesquite/lib/ToolPalette.class java/Mesquite_Folder.3.70/mesquite/lib/TDLegendWithColors.class java/Mesquite_Folder.3.70/mesquite/lib/MqFilterInputStream.class java/Mesquite_Folder.3.70/mesquite/lib/IntegerSqMatrixFields.class java/Mesquite_Folder.3.70/mesquite/lib/TextRotator.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteListWindow.class java/Mesquite_Folder.3.70/mesquite/lib/ScrollTextField.class java/Mesquite_Folder.3.70/mesquite/lib/MiniNumberEditor.class java/Mesquite_Folder.3.70/mesquite/lib/StdOutWatcher.class java/Mesquite_Folder.3.70/mesquite/lib/SingleLineTextField.class java/Mesquite_Folder.3.70/mesquite/lib/Bits.class java/Mesquite_Folder.3.70/mesquite/lib/CommandThread.class java/Mesquite_Folder.3.70/mesquite/lib/LongArray.class java/Mesquite_Folder.3.70/mesquite/lib/HeaderPanel.class java/Mesquite_Folder.3.70/mesquite/lib/ANTextField.class java/Mesquite_Folder.3.70/mesquite/lib/MHTMLControl.class java/Mesquite_Folder.3.70/mesquite/lib/NameHolder.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteCommand.class java/Mesquite_Folder.3.70/mesquite/lib/BasicTaxonNamer.class java/Mesquite_Folder.3.70/mesquite/lib/SymbolGraphicsPanel.class java/Mesquite_Folder.3.70/mesquite/lib/Colorable.class java/Mesquite_Folder.3.70/mesquite/lib/RadioButtons.class java/Mesquite_Folder.3.70/mesquite/lib/TranslationTable.class java/Mesquite_Folder.3.70/mesquite/lib/NumberArray.class java/Mesquite_Folder.3.70/mesquite/lib/RandomBetween.class java/Mesquite_Folder.3.70/mesquite/lib/TaxaSpecsSet.class java/Mesquite_Folder.3.70/mesquite/lib/ConsoleThread.class java/Mesquite_Folder.3.70/mesquite/lib/StringUtil.class java/Mesquite_Folder.3.70/mesquite/lib/ContentArea$1.class java/Mesquite_Folder.3.70/mesquite/lib/Taxon.class java/Mesquite_Folder.3.70/mesquite/lib/MesquiteTree.class java/Mesquite_Folder.3.70/mesquite/lib/TaxaInclusionSet.class java/Mesquite_Folder.3.70/mesquite/lib/MRPopup.class java/Mesquite_Folder.3.70/mesquite/lib/LightLabel.class java/Mesquite_Folder.3.70/mesquite/lib/MarchingAnts.class java/Mesquite_Folder.3.70/mesquite/lib/EmployerEmployee.class java/Mesquite_Folder.3.70/mesquite/lib/SimpleTaxonNamer.class java/Mesquite_Folder.3.70/mesquite/lib/MousePanel.class java/Mesquite_Folder.3.70/mesquite/lib/DirFilenameFilter.class java/Mesquite_Folder.3.70/mesquite/lib/TaxaBitsSet.class java/Mesquite_Folder.3.70/mesquite/lib/Undoer.class java/Mesquite_Folder.3.70/mesquite/lib/Showable.class java/Mesquite_Folder.3.70/mesquite/diverse/ java/Mesquite_Folder.3.70/mesquite/diverse/BiSSETreeCharSim/ java/Mesquite_Folder.3.70/mesquite/diverse/BiSSETreeCharSim/BiSSETreeCharSim.class java/Mesquite_Folder.3.70/mesquite/diverse/SisterDiversification/ java/Mesquite_Folder.3.70/mesquite/diverse/SisterDiversification/SisterDiversification.class java/Mesquite_Folder.3.70/mesquite/diverse/BiSSELikelihood/ java/Mesquite_Folder.3.70/mesquite/diverse/BiSSELikelihood/BiSSELikelihood.class java/Mesquite_Folder.3.70/mesquite/diverse/DivCategCharMLCalculator/ java/Mesquite_Folder.3.70/mesquite/diverse/DivCategCharMLCalculator/DivCategCharMLCalculator.class java/Mesquite_Folder.3.70/mesquite/diverse/DivCategCharMLCalculator/DiversificationCategModel.class java/Mesquite_Folder.3.70/mesquite/diverse/CharAssocDivViewer/ java/Mesquite_Folder.3.70/mesquite/diverse/CharAssocDivViewer/CADPanel.class java/Mesquite_Folder.3.70/mesquite/diverse/CharAssocDivViewer/CharAssocDivViewer.class java/Mesquite_Folder.3.70/mesquite/diverse/BirthDeathTrees/ java/Mesquite_Folder.3.70/mesquite/diverse/BirthDeathTrees/BirthDeathTrees.class java/Mesquite_Folder.3.70/mesquite/diverse/BiSSELikelihoodCalculator/ java/Mesquite_Folder.3.70/mesquite/diverse/BiSSELikelihoodCalculator/SpecExtincCategModel.class java/Mesquite_Folder.3.70/mesquite/diverse/BiSSELikelihoodCalculator/BiSSELikelihoodCalculator.class java/Mesquite_Folder.3.70/mesquite/diverse/aDiverseIntro/ java/Mesquite_Folder.3.70/mesquite/diverse/aDiverseIntro/splash.gif java/Mesquite_Folder.3.70/mesquite/diverse/aDiverseIntro/splash.psd.zip java/Mesquite_Folder.3.70/mesquite/diverse/aDiverseIntro/aDiverseIntro.class java/Mesquite_Folder.3.70/mesquite/diverse/ContCharSpeciation/ java/Mesquite_Folder.3.70/mesquite/diverse/ContCharSpeciation/ContCharSpeciation.class java/Mesquite_Folder.3.70/mesquite/diverse/DiversCategCharLikelihood/ java/Mesquite_Folder.3.70/mesquite/diverse/DiversCategCharLikelihood/DiversCategCharLikelihood.class java/Mesquite_Folder.3.70/mesquite/diverse/SpecExtincLikelihood/ java/Mesquite_Folder.3.70/mesquite/diverse/SpecExtincLikelihood/SpecExtincLikelihood.class java/Mesquite_Folder.3.70/mesquite/diverse/lib/ java/Mesquite_Folder.3.70/mesquite/diverse/lib/RKF45Solver.class java/Mesquite_Folder.3.70/mesquite/diverse/lib/DESystem.class java/Mesquite_Folder.3.70/mesquite/diverse/lib/NumberForTreeDivers.class java/Mesquite_Folder.3.70/mesquite/diverse/lib/DEQNumSolver.class java/Mesquite_Folder.3.70/mesquite/diverse/lib/TreeCharSimulate.class java/Mesquite_Folder.3.70/mesquite/diverse/lib/NumForCharAndTreeDivers.class java/Mesquite_Folder.3.70/mesquite/diverse/lib/RK4Solver.class java/Mesquite_Folder.3.70/mesquite/diverse/BiSSELikelihoodRatio/ java/Mesquite_Folder.3.70/mesquite/diverse/BiSSELikelihoodRatio/BiSSELikelihoodRatio.class java/Mesquite_Folder.3.70/mesquite/diverse/EvolveTreesDiversChars/ java/Mesquite_Folder.3.70/mesquite/diverse/EvolveTreesDiversChars/EvolveTreesDiversChars.class java/Mesquite_Folder.3.70/mesquite/diverse/SpecExtincMLCalculator/ java/Mesquite_Folder.3.70/mesquite/diverse/SpecExtincMLCalculator/SpecExtincMLCalculator.class java/Mesquite_Folder.3.70/mesquite/diverse/SpecExtincMLCalculator/SpecExtincModel.class java/Mesquite_Folder.3.70/mesquite/diverse/LineagesThroughTime/ java/Mesquite_Folder.3.70/mesquite/diverse/LineagesThroughTime/LinPanel.class java/Mesquite_Folder.3.70/mesquite/diverse/LineagesThroughTime/LineagesThroughTime.class java/Mesquite_Folder.3.70/mesquite/diverse/LineagesThroughTime/LineagesWindow.class java/Mesquite_Folder.3.70/mesquite/diverse/CharIndepDivViewer/ java/Mesquite_Folder.3.70/mesquite/diverse/CharIndepDivViewer/CADPanel.class java/Mesquite_Folder.3.70/mesquite/diverse/CharIndepDivViewer/CharIndepDivViewer.class java/Mesquite_Folder.3.70/mesquite/rhetenor/ java/Mesquite_Folder.3.70/mesquite/rhetenor/aRhetenorIntro/ java/Mesquite_Folder.3.70/mesquite/rhetenor/aRhetenorIntro/aRhetenorIntro.class java/Mesquite_Folder.3.70/mesquite/rhetenor/aRhetenorIntro/splash.gif java/Mesquite_Folder.3.70/mesquite/rhetenor/aRhetenorIntro/index.html java/Mesquite_Folder.3.70/mesquite/rhetenor/aRhetenorIntro/splashSmall.gif java/Mesquite_Folder.3.70/mesquite/rhetenor/aRhetenorIntro/splash.gif copy java/Mesquite_Folder.3.70/mesquite/rhetenor/PrincipalComponents/ java/Mesquite_Folder.3.70/mesquite/rhetenor/PrincipalComponents/PrincipalComponents.class java/Mesquite_Folder.3.70/mesquite/rhetenor/CharFromOrdinations/ java/Mesquite_Folder.3.70/mesquite/rhetenor/CharFromOrdinations/CharFromOrdinations.class java/Mesquite_Folder.3.70/mesquite/rhetenor/ShowCharLoadings/ java/Mesquite_Folder.3.70/mesquite/rhetenor/ShowCharLoadings/ShowCharLoadings.class java/Mesquite_Folder.3.70/mesquite/rhetenor/CanonicalVariates/ java/Mesquite_Folder.3.70/mesquite/rhetenor/CanonicalVariates/CanonicalVariates.class java/Mesquite_Folder.3.70/mesquite/rhetenor/aPCA/ java/Mesquite_Folder.3.70/mesquite/rhetenor/aPCA/aPCA.class java/Mesquite_Folder.3.70/mesquite/rhetenor/explanation.txt java/Mesquite_Folder.3.70/mesquite/rhetenor/NodeLocs3DPlot/ java/Mesquite_Folder.3.70/mesquite/rhetenor/NodeLocs3DPlot/NodeLocs3DPlot.class java/Mesquite_Folder.3.70/mesquite/rhetenor/NodeLocs3DPlot/NodeLocs3DPlotLegend.class java/Mesquite_Folder.3.70/mesquite/rhetenor/NodeLocs3DPlot/NodeLocs3DPlotExtra.class java/Mesquite_Folder.3.70/mesquite/rhetenor/LandmarkDrawings/ java/Mesquite_Folder.3.70/mesquite/rhetenor/LandmarkDrawings/LandmarkLegend.class java/Mesquite_Folder.3.70/mesquite/rhetenor/LandmarkDrawings/NodeDrawing.class java/Mesquite_Folder.3.70/mesquite/rhetenor/LandmarkDrawings/LandmarkDrawings.class java/Mesquite_Folder.3.70/mesquite/rhetenor/LandmarkDrawings/PlotOperator.class java/Mesquite_Folder.3.70/mesquite/rhetenor/LandmarkDrawings/32landmark.gif java/Mesquite_Folder.3.70/mesquite/rhetenor/LandmarkDrawings/landmark.gif java/Mesquite_Folder.3.70/mesquite/rhetenor/LandmarkDrawings/DrawingsAtNodes.class java/Mesquite_Folder.3.70/mesquite/rhetenor/LandmarkDrawings/64landmark.gif java/Mesquite_Folder.3.70/mesquite/rhetenor/wPCA/ java/Mesquite_Folder.3.70/mesquite/rhetenor/wPCA/wPCA.class java/Mesquite_Folder.3.70/mesquite/rhetenor/EvolutionaryPCA/ java/Mesquite_Folder.3.70/mesquite/rhetenor/EvolutionaryPCA/EvolutionaryPCA.class java/Mesquite_Folder.3.70/mesquite/rhetenor/MatricesFromOrdinations/ java/Mesquite_Folder.3.70/mesquite/rhetenor/MatricesFromOrdinations/MatricesFromOrdinations.class java/Mesquite_Folder.3.70/mesquite/rhetenor/CharLoadings/ java/Mesquite_Folder.3.70/mesquite/rhetenor/CharLoadings/CharLoadings.class java/Mesquite_Folder.3.70/mesquite/rhetenor/PlotTree3D/ java/Mesquite_Folder.3.70/mesquite/rhetenor/PlotTree3D/PlotTreeDrawing.class java/Mesquite_Folder.3.70/mesquite/rhetenor/PlotTree3D/PlotTree3D.class java/Mesquite_Folder.3.70/mesquite/rhetenor/lib/ java/Mesquite_Folder.3.70/mesquite/rhetenor/lib/aPCAOrdination.class java/Mesquite_Folder.3.70/mesquite/rhetenor/lib/OrdinationAssistant.class java/Mesquite_Folder.3.70/mesquite/rhetenor/lib/Ordination.class java/Mesquite_Folder.3.70/mesquite/rhetenor/lib/Ordinator.class java/Mesquite_Folder.3.70/mesquite/rhetenor/lib/PCAOrdination.class java/Mesquite_Folder.3.70/mesquite/rhetenor/lib/NodeLocsPlot3D.class java/Mesquite_Folder.3.70/mesquite/rhetenor/lib/PCACorrelOrdination.class java/Mesquite_Folder.3.70/mesquite/rhetenor/lib/EPCAOrdination.class java/Mesquite_Folder.3.70/mesquite/rhetenor/lib/CharacterLoadings.class java/Mesquite_Folder.3.70/mesquite/rhetenor/lib/CharsFromMatrixSource.class java/Mesquite_Folder.3.70/mesquite/rhetenor/lib/MatrixUtil.class java/Mesquite_Folder.3.70/mesquite/rhetenor/lib/wPCAOrdination.class java/Mesquite_Folder.3.70/mesquite/rhetenor/lib/CVAOrdination.class java/Mesquite_Folder.3.70/mesquite/rhetenor/CharsFromMatrices/ java/Mesquite_Folder.3.70/mesquite/rhetenor/CharsFromMatrices/CharsFromMatrices.class java/Mesquite_Folder.3.70/mesquite/coalesce/ java/Mesquite_Folder.3.70/mesquite/coalesce/LineageWidth/ java/Mesquite_Folder.3.70/mesquite/coalesce/LineageWidth/LineageWidth.class java/Mesquite_Folder.3.70/mesquite/coalesce/LineageWidth/WidthsToolExtra.class java/Mesquite_Folder.3.70/mesquite/coalesce/LineageWidth/adjustWidths.gif java/Mesquite_Folder.3.70/mesquite/coalesce/LineageWidth/32adjustWidths.gif java/Mesquite_Folder.3.70/mesquite/coalesce/LineageWidth/64adjustWidths.gif java/Mesquite_Folder.3.70/mesquite/coalesce/ContainedCoalescence/ java/Mesquite_Folder.3.70/mesquite/coalesce/ContainedCoalescence/ContainedCoalescence.class java/Mesquite_Folder.3.70/mesquite/coalesce/aCoalescencePkgIntro/ java/Mesquite_Folder.3.70/mesquite/coalesce/aCoalescencePkgIntro/splash.gif java/Mesquite_Folder.3.70/mesquite/coalesce/aCoalescencePkgIntro/index.html java/Mesquite_Folder.3.70/mesquite/coalesce/aCoalescencePkgIntro/aCoalescencePkgIntro.class java/Mesquite_Folder.3.70/mesquite/coalesce/aCoalescencePkgIntro/splashSmall.gif java/Mesquite_Folder.3.70/mesquite/coalesce/aCoalescencePkgIntro/splash.gif copy java/Mesquite_Folder.3.70/mesquite/coalesce/TreeDepth/ java/Mesquite_Folder.3.70/mesquite/coalesce/TreeDepth/TreeDepth.class java/Mesquite_Folder.3.70/mesquite/coalesce/DeepCoalMultLoci/ java/Mesquite_Folder.3.70/mesquite/coalesce/DeepCoalMultLoci/DeepCoalMultLoci.class java/Mesquite_Folder.3.70/mesquite/coalesce/AverageTreeDepth/ java/Mesquite_Folder.3.70/mesquite/coalesce/AverageTreeDepth/AverageTreeDepth.class java/Mesquite_Folder.3.70/mesquite/coalesce/DuplicationsExtinctionsSp/ java/Mesquite_Folder.3.70/mesquite/coalesce/DuplicationsExtinctionsSp/DuplicationsExtinctionsSp.class java/Mesquite_Folder.3.70/mesquite/coalesce/explanation.txt java/Mesquite_Folder.3.70/mesquite/coalesce/ContainedCoalescSim/ java/Mesquite_Folder.3.70/mesquite/coalesce/ContainedCoalescSim/ContainedCoalescSim.class java/Mesquite_Folder.3.70/mesquite/coalesce/NeutralCoalescence/ java/Mesquite_Folder.3.70/mesquite/coalesce/NeutralCoalescence/NeutralCoalescence.class java/Mesquite_Folder.3.70/mesquite/coalesce/SlatkinMaddisonS/ java/Mesquite_Folder.3.70/mesquite/coalesce/SlatkinMaddisonS/SlatkinMaddisonS.class java/Mesquite_Folder.3.70/mesquite/coalesce/CoalescenceWMigration/ java/Mesquite_Folder.3.70/mesquite/coalesce/CoalescenceWMigration/CoalescenceWMigration.class java/Mesquite_Folder.3.70/mesquite/coalesce/DuplicationsExtinctionsG/ java/Mesquite_Folder.3.70/mesquite/coalesce/DuplicationsExtinctionsG/DuplicationsExtinctionsG.class java/Mesquite_Folder.3.70/mesquite/coalesce/macros/ java/Mesquite_Folder.3.70/mesquite/coalesce/macros/s_by_depth java/Mesquite_Folder.3.70/mesquite/coalesce/InsertNode/ java/Mesquite_Folder.3.70/mesquite/coalesce/InsertNode/InsertToolExtra.class java/Mesquite_Folder.3.70/mesquite/coalesce/InsertNode/64insertNode.gif java/Mesquite_Folder.3.70/mesquite/coalesce/InsertNode/32insertNode.gif java/Mesquite_Folder.3.70/mesquite/coalesce/InsertNode/InsertNode.class java/Mesquite_Folder.3.70/mesquite/coalesce/InsertNode/insertNode.gif java/Mesquite_Folder.3.70/mesquite/coalesce/CoalescentTrees/ java/Mesquite_Folder.3.70/mesquite/coalesce/CoalescentTrees/CoalescentTrees.class java/Mesquite_Folder.3.70/mesquite/coalesce/lib/ java/Mesquite_Folder.3.70/mesquite/coalesce/lib/GeneTreeFit.class java/Mesquite_Folder.3.70/mesquite/coalesce/lib/CoalescedNode.class java/Mesquite_Folder.3.70/mesquite/coalesce/lib/NumForGeneTInSpeciesT.class java/Mesquite_Folder.3.70/mesquite/coalesce/lib/SpeciesTreeFit.class java/Mesquite_Folder.3.70/mesquite/coalesce/lib/Coalescer.class java/Mesquite_Folder.3.70/mesquite/coalesce/lib/CoalescerObed.class java/Mesquite_Folder.3.70/mesquite/coalesce/lib/ContainedTreeSim.class java/Mesquite_Folder.3.70/mesquite/coalesce/DeepCoalescencesG/ java/Mesquite_Folder.3.70/mesquite/coalesce/DeepCoalescencesG/DeepCoalescencesG.class java/Mesquite_Folder.3.70/mesquite/coalesce/DeepCoalescencesSp/ java/Mesquite_Folder.3.70/mesquite/coalesce/DeepCoalescencesSp/DeepCoalescencesSp.class java/Mesquite_Folder.3.70/mesquite/coalesce/RecCoalescenceHistory/ java/Mesquite_Folder.3.70/mesquite/coalesce/RecCoalescenceHistory/RerootStore.class java/Mesquite_Folder.3.70/mesquite/coalesce/RecCoalescenceHistory/RecCoalescenceHistory.class java/Mesquite_Folder.3.70/mesquite/genesis/ java/Mesquite_Folder.3.70/mesquite/genesis/SimDNAModelCurator/ java/Mesquite_Folder.3.70/mesquite/genesis/SimDNAModelCurator/SimDNAModelCurator.class java/Mesquite_Folder.3.70/mesquite/genesis/EvolveDNAChars/ java/Mesquite_Folder.3.70/mesquite/genesis/EvolveDNAChars/EDCCategoricalStateTest.class java/Mesquite_Folder.3.70/mesquite/genesis/EvolveDNAChars/EvolveDNAChars.class java/Mesquite_Folder.3.70/mesquite/genesis/GammaCurator/ java/Mesquite_Folder.3.70/mesquite/genesis/GammaCurator/GammaCurator.class java/Mesquite_Folder.3.70/mesquite/genesis/explanation.txt java/Mesquite_Folder.3.70/mesquite/genesis/InitDNASubmodels/ java/Mesquite_Folder.3.70/mesquite/genesis/InitDNASubmodels/InitDNASubmodels.class java/Mesquite_Folder.3.70/mesquite/genesis/RateMatrixGTRCurator/ java/Mesquite_Folder.3.70/mesquite/genesis/RateMatrixGTRCurator/RateMatrixGTRCurator.class java/Mesquite_Folder.3.70/mesquite/genesis/aGenesisIntro/ java/Mesquite_Folder.3.70/mesquite/genesis/aGenesisIntro/genesisTest.html java/Mesquite_Folder.3.70/mesquite/genesis/aGenesisIntro/gtr.gif java/Mesquite_Folder.3.70/mesquite/genesis/aGenesisIntro/testimages/ java/Mesquite_Folder.3.70/mesquite/genesis/aGenesisIntro/testimages/tree.gif java/Mesquite_Folder.3.70/mesquite/genesis/aGenesisIntro/testimages/gamma.gif java/Mesquite_Folder.3.70/mesquite/genesis/aGenesisIntro/testimages/gtrrc.gif java/Mesquite_Folder.3.70/mesquite/genesis/aGenesisIntro/testimages/titv.gif java/Mesquite_Folder.3.70/mesquite/genesis/aGenesisIntro/testimages/gtrrb.gif java/Mesquite_Folder.3.70/mesquite/genesis/aGenesisIntro/testimages/gtrra.gif java/Mesquite_Folder.3.70/mesquite/genesis/aGenesisIntro/testimages/gtrre.gif java/Mesquite_Folder.3.70/mesquite/genesis/aGenesisIntro/testimages/gtrrd.gif java/Mesquite_Folder.3.70/mesquite/genesis/aGenesisIntro/splash.gif java/Mesquite_Folder.3.70/mesquite/genesis/aGenesisIntro/index.html java/Mesquite_Folder.3.70/mesquite/genesis/aGenesisIntro/aGenesisIntro.class java/Mesquite_Folder.3.70/mesquite/genesis/aGenesisIntro/splashSmall.gif java/Mesquite_Folder.3.70/mesquite/genesis/aGenesisIntro/gamma.gif java/Mesquite_Folder.3.70/mesquite/genesis/aGenesisIntro/composite.gif java/Mesquite_Folder.3.70/mesquite/genesis/StateFreqDNAEmpCurator/ java/Mesquite_Folder.3.70/mesquite/genesis/StateFreqDNAEmpCurator/StateFreqDNAEmpCurator.class java/Mesquite_Folder.3.70/mesquite/genesis/RateMatrixTiTvCurator/ java/Mesquite_Folder.3.70/mesquite/genesis/RateMatrixTiTvCurator/RateMatrixTiTvCurator.class java/Mesquite_Folder.3.70/mesquite/genesis/GammaInvarCurator/ java/Mesquite_Folder.3.70/mesquite/genesis/GammaInvarCurator/GammaInvarCurator.class java/Mesquite_Folder.3.70/mesquite/genesis/CodePosRatesCurator/ java/Mesquite_Folder.3.70/mesquite/genesis/CodePosRatesCurator/CodePosRatesCurator.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/ java/Mesquite_Folder.3.70/mesquite/genesis/lib/CharRatesModel.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/StateFreqModelSet.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/RateMatrixDNAModel.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/RateMatrixCurator.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/StateFreqDNAEqual.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/ProbSubModel.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/CharRatesInvar.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/ProbabilityDNAModel.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/ProbSubmodelEdit.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/StateFreqDNAModel.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/CompositProbCategModel.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/SimulationDNAModel.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/RateMatrixEqualDNAModel.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/StateFreqDNAEmpir.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/StateFreqModel.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/CharRatesEqual.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/CharRatesModelInfo.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/CharRatesGamma.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/RateMatrixTiTvModel.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/ProbSubModelCurator.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/StateFreqUserDNAModel.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/CharRatesCurator.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/StateFreqUserModel.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/StateFreqUserCurator.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/RateMatrixCatModel.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/CharRatesCodePos.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/RateMatrixGTRModel.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/CharRateMatrixModelSet.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/StateFreqDNASpecif.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/RateMatrixCatModelInfo.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/CharRatesGammaInvar.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/SubmodelInfo.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/CharRatesModelSet.class java/Mesquite_Folder.3.70/mesquite/genesis/lib/StateFreqCurator.class java/Mesquite_Folder.3.70/mesquite/genesis/InvarCurator/ java/Mesquite_Folder.3.70/mesquite/genesis/InvarCurator/InvarCurator.class java/Mesquite_Folder.3.70/mesquite/genesis/StateFreqUserDNACurator/ java/Mesquite_Folder.3.70/mesquite/genesis/StateFreqUserDNACurator/StateFreqUserDNACurator.class java/Mesquite_Folder.3.70/mesquite/cont/ java/Mesquite_Folder.3.70/mesquite/cont/ItemsEditorForInfoPanel/ java/Mesquite_Folder.3.70/mesquite/cont/ItemsEditorForInfoPanel/NameField$KListener.class java/Mesquite_Folder.3.70/mesquite/cont/ItemsEditorForInfoPanel/ItemsEditorForInfoPanel.class java/Mesquite_Folder.3.70/mesquite/cont/ItemsEditorForInfoPanel/ItemsPanel.class java/Mesquite_Folder.3.70/mesquite/cont/ItemsEditorForInfoPanel/NameField.class java/Mesquite_Folder.3.70/mesquite/cont/ItemsEditorForInfoPanel/ItemsField.class java/Mesquite_Folder.3.70/mesquite/cont/ItemValueInTaxon/ java/Mesquite_Folder.3.70/mesquite/cont/ItemValueInTaxon/ItemValueInTaxon.class java/Mesquite_Folder.3.70/mesquite/cont/AddToStates/ java/Mesquite_Folder.3.70/mesquite/cont/AddToStates/AddToStates.class java/Mesquite_Folder.3.70/mesquite/cont/ContCharFrTaxonValue/ java/Mesquite_Folder.3.70/mesquite/cont/ContCharFrTaxonValue/ContCharFrTaxonValue.class java/Mesquite_Folder.3.70/mesquite/cont/ManageContChars/ java/Mesquite_Folder.3.70/mesquite/cont/ManageContChars/ManageContChars.class java/Mesquite_Folder.3.70/mesquite/cont/RandomFillUniform/ java/Mesquite_Folder.3.70/mesquite/cont/RandomFillUniform/RandomFillUniform.class java/Mesquite_Folder.3.70/mesquite/cont/XYMatrixToItems/ java/Mesquite_Folder.3.70/mesquite/cont/XYMatrixToItems/XYMatrixToItems.class java/Mesquite_Folder.3.70/mesquite/cont/aContIntro/ java/Mesquite_Folder.3.70/mesquite/cont/aContIntro/aContIntro.class java/Mesquite_Folder.3.70/mesquite/cont/RemoveItem/ java/Mesquite_Folder.3.70/mesquite/cont/RemoveItem/RemoveItem.class java/Mesquite_Folder.3.70/mesquite/cont/explanation.txt java/Mesquite_Folder.3.70/mesquite/cont/LogTransform/ java/Mesquite_Folder.3.70/mesquite/cont/LogTransform/LogTransform.class java/Mesquite_Folder.3.70/mesquite/cont/MeanValue/ java/Mesquite_Folder.3.70/mesquite/cont/MeanValue/MeanValue.class java/Mesquite_Folder.3.70/mesquite/cont/NodeLocs2DPlot/ java/Mesquite_Folder.3.70/mesquite/cont/NodeLocs2DPlot/NodeLocs2DPlotExtra.class java/Mesquite_Folder.3.70/mesquite/cont/NodeLocs2DPlot/NodeLocs2DPlot.class java/Mesquite_Folder.3.70/mesquite/cont/NodeLocs2DPlot/NodeLocs2DPlotLegend.class java/Mesquite_Folder.3.70/mesquite/cont/AddCharacter/ java/Mesquite_Folder.3.70/mesquite/cont/AddCharacter/AddCharacter.class java/Mesquite_Folder.3.70/mesquite/cont/InverseContState/ java/Mesquite_Folder.3.70/mesquite/cont/InverseContState/InverseContState.class java/Mesquite_Folder.3.70/mesquite/cont/MultiplyByCharacter/ java/Mesquite_Folder.3.70/mesquite/cont/MultiplyByCharacter/MultiplyByCharacter.class java/Mesquite_Folder.3.70/mesquite/cont/Standardize/ java/Mesquite_Folder.3.70/mesquite/cont/Standardize/Standardize.class java/Mesquite_Folder.3.70/mesquite/cont/ManageGeogChars/ java/Mesquite_Folder.3.70/mesquite/cont/ManageGeogChars/ManageGeogChars.class java/Mesquite_Folder.3.70/mesquite/cont/SquareRootTransform/ java/Mesquite_Folder.3.70/mesquite/cont/SquareRootTransform/SquareRootTransform.class java/Mesquite_Folder.3.70/mesquite/cont/ArcSineTransform/ java/Mesquite_Folder.3.70/mesquite/cont/ArcSineTransform/ArcSineTransform.class java/Mesquite_Folder.3.70/mesquite/cont/PlotTree/ java/Mesquite_Folder.3.70/mesquite/cont/PlotTree/PlotTreeDrawing.class java/Mesquite_Folder.3.70/mesquite/cont/PlotTree/PlotTree.class java/Mesquite_Folder.3.70/mesquite/cont/RandomFillCont/ java/Mesquite_Folder.3.70/mesquite/cont/RandomFillCont/RandomFillCont.class java/Mesquite_Folder.3.70/mesquite/cont/lib/ java/Mesquite_Folder.3.70/mesquite/cont/lib/MContinuousDistribution.class java/Mesquite_Folder.3.70/mesquite/cont/lib/EigenAnalysis.class java/Mesquite_Folder.3.70/mesquite/cont/lib/ItemContainer.class java/Mesquite_Folder.3.70/mesquite/cont/lib/GeographicStates.class java/Mesquite_Folder.3.70/mesquite/cont/lib/ContinuousDistribution.class java/Mesquite_Folder.3.70/mesquite/cont/lib/ContinuousStateTest.class java/Mesquite_Folder.3.70/mesquite/cont/lib/ContColorTable.class java/Mesquite_Folder.3.70/mesquite/cont/lib/MContinuousStates.class java/Mesquite_Folder.3.70/mesquite/cont/lib/ContinuousAdjustable.class java/Mesquite_Folder.3.70/mesquite/cont/lib/ContinuousData.class java/Mesquite_Folder.3.70/mesquite/cont/lib/GeogDataSearcher.class java/Mesquite_Folder.3.70/mesquite/cont/lib/ManageContCharsA.class java/Mesquite_Folder.3.70/mesquite/cont/lib/ContDataAlterer.class java/Mesquite_Folder.3.70/mesquite/cont/lib/MContinuousEmbedded.class java/Mesquite_Folder.3.70/mesquite/cont/lib/MContinuousHistory.class java/Mesquite_Folder.3.70/mesquite/cont/lib/ContinuousEmbedded.class java/Mesquite_Folder.3.70/mesquite/cont/lib/ContDataSearcher.class java/Mesquite_Folder.3.70/mesquite/cont/lib/GeographicStateTest.class java/Mesquite_Folder.3.70/mesquite/cont/lib/ContinuousState.class java/Mesquite_Folder.3.70/mesquite/cont/lib/GeogDataUtility.class java/Mesquite_Folder.3.70/mesquite/cont/lib/MGeographicStates.class java/Mesquite_Folder.3.70/mesquite/cont/lib/GeographicData.class java/Mesquite_Folder.3.70/mesquite/cont/lib/BasicStatPak.class java/Mesquite_Folder.3.70/mesquite/cont/lib/ContinuousStates.class java/Mesquite_Folder.3.70/mesquite/cont/lib/ContinuousHistory.class java/Mesquite_Folder.3.70/mesquite/cont/lib/SquaredReconstructor.class java/Mesquite_Folder.3.70/mesquite/cont/lib/GeographicAdjustable.class java/Mesquite_Folder.3.70/mesquite/cont/lib/ContDataUtility.class java/Mesquite_Folder.3.70/mesquite/cont/lib/GeographicState.class java/Mesquite_Folder.3.70/mesquite/cont/lib/MContinuousAdjustable.class java/Mesquite_Folder.3.70/mesquite/cont/MultiplyStates/ java/Mesquite_Folder.3.70/mesquite/cont/MultiplyStates/MultiplyStates.class java/Mesquite_Folder.3.70/mesquite/cont/MapContinuous/ java/Mesquite_Folder.3.70/mesquite/cont/MapContinuous/MapContinuous.class java/Mesquite_Folder.3.70/mesquite/cont/RenameItem/ java/Mesquite_Folder.3.70/mesquite/cont/RenameItem/RenameItem.class java/Mesquite_Folder.3.70/mesquite/cont/DiscretizeContinuousCharacters/ java/Mesquite_Folder.3.70/mesquite/cont/DiscretizeContinuousCharacters/DiscretizeContinuousCharacters.class java/Mesquite_Folder.3.70/mesquite/cont/AddNoise/ java/Mesquite_Folder.3.70/mesquite/cont/AddNoise/AddNoise.class java/Mesquite_Folder.3.70/mesquite/cont/ContinuousStatesT/ java/Mesquite_Folder.3.70/mesquite/cont/ContinuousStatesT/ContinuousStatesT.class java/Mesquite_Folder.3.70/mesquite/cont/AddItem/ java/Mesquite_Folder.3.70/mesquite/cont/AddItem/AddItem.class java/Mesquite_Folder.3.70/mesquite/treefarm/ java/Mesquite_Folder.3.70/mesquite/treefarm/RemoveAllBranchLabels/ java/Mesquite_Folder.3.70/mesquite/treefarm/RemoveAllBranchLabels/RemoveAllBranchLabels.class java/Mesquite_Folder.3.70/mesquite/treefarm/Correlation2Trees/ java/Mesquite_Folder.3.70/mesquite/treefarm/Correlation2Trees/Correlation2Trees.class java/Mesquite_Folder.3.70/mesquite/treefarm/DeleteReticulations/ java/Mesquite_Folder.3.70/mesquite/treefarm/DeleteReticulations/DeleteReticulations.class java/Mesquite_Folder.3.70/mesquite/treefarm/AllTrees/ java/Mesquite_Folder.3.70/mesquite/treefarm/AllTrees/AllTrees.class java/Mesquite_Folder.3.70/mesquite/treefarm/NodeDepth/ java/Mesquite_Folder.3.70/mesquite/treefarm/NodeDepth/NodeDepth.class java/Mesquite_Folder.3.70/mesquite/treefarm/Concat2TreeSources/ java/Mesquite_Folder.3.70/mesquite/treefarm/Concat2TreeSources/Concat2TreeSources.class java/Mesquite_Folder.3.70/mesquite/treefarm/CompareOtherTree/ java/Mesquite_Folder.3.70/mesquite/treefarm/CompareOtherTree/CompareOtherTree.class java/Mesquite_Folder.3.70/mesquite/treefarm/RandomBranchMoves/ java/Mesquite_Folder.3.70/mesquite/treefarm/RandomBranchMoves/RandomBranchMoves.class java/Mesquite_Folder.3.70/mesquite/treefarm/RandomModifTree/ java/Mesquite_Folder.3.70/mesquite/treefarm/RandomModifTree/RandomModifTree.class java/Mesquite_Folder.3.70/mesquite/treefarm/BLfromDivergenceTimes/ java/Mesquite_Folder.3.70/mesquite/treefarm/BLfromDivergenceTimes/BLfromDivergenceTimes.class java/Mesquite_Folder.3.70/mesquite/treefarm/AddSelectedTaxaToTree/ java/Mesquite_Folder.3.70/mesquite/treefarm/AddSelectedTaxaToTree/AddSelectedTaxaToTree.class java/Mesquite_Folder.3.70/mesquite/treefarm/CladeMatch/ java/Mesquite_Folder.3.70/mesquite/treefarm/CladeMatch/CladeMatch.class java/Mesquite_Folder.3.70/mesquite/treefarm/SharedClades2Trees/ java/Mesquite_Folder.3.70/mesquite/treefarm/SharedClades2Trees/SharedClades2Trees.class java/Mesquite_Folder.3.70/mesquite/treefarm/OutgroupRoot/ java/Mesquite_Folder.3.70/mesquite/treefarm/OutgroupRoot/OutgroupRoot.class java/Mesquite_Folder.3.70/mesquite/treefarm/SelectTaxaInSameClade/ java/Mesquite_Folder.3.70/mesquite/treefarm/SelectTaxaInSameClade/SelectTaxaInSameClade.class java/Mesquite_Folder.3.70/mesquite/treefarm/ConcatMultTreeSources/ java/Mesquite_Folder.3.70/mesquite/treefarm/ConcatMultTreeSources/ConcatMultTreeSources.class java/Mesquite_Folder.3.70/mesquite/treefarm/ExtractTreeBlock/ java/Mesquite_Folder.3.70/mesquite/treefarm/ExtractTreeBlock/ExtractTreeBlock.class java/Mesquite_Folder.3.70/mesquite/treefarm/explanation.txt java/Mesquite_Folder.3.70/mesquite/treefarm/RarefyTree/ java/Mesquite_Folder.3.70/mesquite/treefarm/RarefyTree/RarefyTree.class java/Mesquite_Folder.3.70/mesquite/treefarm/RandomlyModifiedTrees/ java/Mesquite_Folder.3.70/mesquite/treefarm/RandomlyModifiedTrees/RandomlyModifiedTrees.class java/Mesquite_Folder.3.70/mesquite/treefarm/NNAssocValues/ java/Mesquite_Folder.3.70/mesquite/treefarm/NNAssocValues/NNAssocValues.class java/Mesquite_Folder.3.70/mesquite/treefarm/EmailTree/ java/Mesquite_Folder.3.70/mesquite/treefarm/EmailTree/EmailTree.class java/Mesquite_Folder.3.70/mesquite/treefarm/CopyTreesToNexusBlock/ java/Mesquite_Folder.3.70/mesquite/treefarm/CopyTreesToNexusBlock/CopyTreesToNexusBlock.class java/Mesquite_Folder.3.70/mesquite/treefarm/SplitFrequencies/ java/Mesquite_Folder.3.70/mesquite/treefarm/SplitFrequencies/SplitFrequencies.class java/Mesquite_Folder.3.70/mesquite/treefarm/DuplicateTreeBlocks/ java/Mesquite_Folder.3.70/mesquite/treefarm/DuplicateTreeBlocks/DuplicateTreeBlocks.class java/Mesquite_Folder.3.70/mesquite/treefarm/AverageNodeAssociatedDifference/ java/Mesquite_Folder.3.70/mesquite/treefarm/AverageNodeAssociatedDifference/AverageNodeAssociatedDifference.class java/Mesquite_Folder.3.70/mesquite/treefarm/NumTopologyCongruent/ java/Mesquite_Folder.3.70/mesquite/treefarm/NumTopologyCongruent/NumTopologyCongruent.class java/Mesquite_Folder.3.70/mesquite/treefarm/ReinterpretBranchLabels/ java/Mesquite_Folder.3.70/mesquite/treefarm/ReinterpretBranchLabels/ReinterpretBranchLabels.class java/Mesquite_Folder.3.70/mesquite/treefarm/SortTaxaByTree/ java/Mesquite_Folder.3.70/mesquite/treefarm/SortTaxaByTree/SortTaxaByTree.class java/Mesquite_Folder.3.70/mesquite/treefarm/AvgTaxonValueAmgTrees/ java/Mesquite_Folder.3.70/mesquite/treefarm/AvgTaxonValueAmgTrees/AvgTaxonValueAmgTrees.class java/Mesquite_Folder.3.70/mesquite/treefarm/ReshuffleTaxa/ java/Mesquite_Folder.3.70/mesquite/treefarm/ReshuffleTaxa/ReshuffleTaxa.class java/Mesquite_Folder.3.70/mesquite/treefarm/SharedPartitions2Trees/ java/Mesquite_Folder.3.70/mesquite/treefarm/SharedPartitions2Trees/SharedPartitions2Trees.class java/Mesquite_Folder.3.70/mesquite/treefarm/CurrentTree/ java/Mesquite_Folder.3.70/mesquite/treefarm/CurrentTree/CurrentTree.class java/Mesquite_Folder.3.70/mesquite/treefarm/AugmentTreeRandomly/ java/Mesquite_Folder.3.70/mesquite/treefarm/AugmentTreeRandomly/AugmentTreeRandomly.class java/Mesquite_Folder.3.70/mesquite/treefarm/CollessImbalance/ java/Mesquite_Folder.3.70/mesquite/treefarm/CollessImbalance/CollessImbalance.class java/Mesquite_Folder.3.70/mesquite/treefarm/NumTreesMatchingCriterion/ java/Mesquite_Folder.3.70/mesquite/treefarm/NumTreesMatchingCriterion/NumTreesMatchingCriterion.class java/Mesquite_Folder.3.70/mesquite/treefarm/FilterTreesOtherSrc/ java/Mesquite_Folder.3.70/mesquite/treefarm/FilterTreesOtherSrc/FilterTreesOtherSrc.class java/Mesquite_Folder.3.70/mesquite/treefarm/AllRerootings/ java/Mesquite_Folder.3.70/mesquite/treefarm/AllRerootings/AllRerootings.class java/Mesquite_Folder.3.70/mesquite/treefarm/TaxonValueFromTree/ java/Mesquite_Folder.3.70/mesquite/treefarm/TaxonValueFromTree/TaxonValueFromTree.class java/Mesquite_Folder.3.70/mesquite/treefarm/BlockDirectlyFromFile/ java/Mesquite_Folder.3.70/mesquite/treefarm/BlockDirectlyFromFile/BlockDirectlyFromFile.class java/Mesquite_Folder.3.70/mesquite/treefarm/TreeTotalPathLength/ java/Mesquite_Folder.3.70/mesquite/treefarm/TreeTotalPathLength/TreeTotalPathLength.class java/Mesquite_Folder.3.70/mesquite/treefarm/RandomResolve/ java/Mesquite_Folder.3.70/mesquite/treefarm/RandomResolve/RandomResolve.class java/Mesquite_Folder.3.70/mesquite/treefarm/MRPMatrices/ java/Mesquite_Folder.3.70/mesquite/treefarm/MRPMatrices/MRPMatrices.class java/Mesquite_Folder.3.70/mesquite/treefarm/FAFillTreeBlock/ java/Mesquite_Folder.3.70/mesquite/treefarm/FAFillTreeBlock/FAFillTreeBlock.class java/Mesquite_Folder.3.70/mesquite/treefarm/DetermModifTree/ java/Mesquite_Folder.3.70/mesquite/treefarm/DetermModifTree/DetermModifTree.class java/Mesquite_Folder.3.70/mesquite/treefarm/lib/ java/Mesquite_Folder.3.70/mesquite/treefarm/lib/SourceFromTreeSource.class java/Mesquite_Folder.3.70/mesquite/treefarm/lib/BlockFromTreeSource.class java/Mesquite_Folder.3.70/mesquite/treefarm/lib/LiveTreeBlocks.class java/Mesquite_Folder.3.70/mesquite/treefarm/lib/NForTaxonWithTrees.class java/Mesquite_Folder.3.70/mesquite/treefarm/lib/DetTreeModifier.class java/Mesquite_Folder.3.70/mesquite/treefarm/lib/RndTreeModifier.class java/Mesquite_Folder.3.70/mesquite/treefarm/lib/SourceModifiedTree.class java/Mesquite_Folder.3.70/mesquite/treefarm/lib/PatristicDistances.class java/Mesquite_Folder.3.70/mesquite/treefarm/lib/NForTaxonWithTree.class java/Mesquite_Folder.3.70/mesquite/treefarm/ConcatTreeBlocks/ java/Mesquite_Folder.3.70/mesquite/treefarm/ConcatTreeBlocks/ConcatTreeBlocks.class java/Mesquite_Folder.3.70/mesquite/treefarm/aTreeFarmIntro/ java/Mesquite_Folder.3.70/mesquite/treefarm/aTreeFarmIntro/splash.gif java/Mesquite_Folder.3.70/mesquite/treefarm/aTreeFarmIntro/aTreeFarmIntro.class java/Mesquite_Folder.3.70/mesquite/treefarm/aTreeFarmIntro/splash.psd java/Mesquite_Folder.3.70/mesquite/treefarm/NumSPRRearrangements/ java/Mesquite_Folder.3.70/mesquite/treefarm/NumSPRRearrangements/NumSPRRearrangements.class java/Mesquite_Folder.3.70/mesquite/treefarm/CladeInTree/ java/Mesquite_Folder.3.70/mesquite/treefarm/CladeInTree/CladeInTree.class java/Mesquite_Folder.3.70/mesquite/treefarm/MakeRerootings/ java/Mesquite_Folder.3.70/mesquite/treefarm/MakeRerootings/MakeRerootings.class java/Mesquite_Folder.3.70/mesquite/treefarm/MakeRerootings/AllRerootToolExtra.class java/Mesquite_Folder.3.70/mesquite/treefarm/MakeRerootings/32allRerootings.gif java/Mesquite_Folder.3.70/mesquite/treefarm/MakeRerootings/allRerootings.gif java/Mesquite_Folder.3.70/mesquite/treefarm/MakeRerootings/64allRerootings.gif java/Mesquite_Folder.3.70/mesquite/treefarm/TreeSatisfiesValue/ java/Mesquite_Folder.3.70/mesquite/treefarm/TreeSatisfiesValue/TreeSatisfiesValue.class java/Mesquite_Folder.3.70/mesquite/treefarm/ConsensusTreesFromBlocks/ java/Mesquite_Folder.3.70/mesquite/treefarm/ConsensusTreesFromBlocks/ConsensusTreesFromBlocks.class java/Mesquite_Folder.3.70/mesquite/treefarm/ConsensusTreesFromBlocks/ConsCompatibilityTest.class java/Mesquite_Folder.3.70/mesquite/treefarm/RearrangedTree/ java/Mesquite_Folder.3.70/mesquite/treefarm/RearrangedTree/RearrangedTree.class java/Mesquite_Folder.3.70/mesquite/treefarm/CondensedTreeSource/ java/Mesquite_Folder.3.70/mesquite/treefarm/CondensedTreeSource/CondensedTreeSource.class java/Mesquite_Folder.3.70/mesquite/treefarm/FractionCladesShared2Trees/ java/Mesquite_Folder.3.70/mesquite/treefarm/FractionCladesShared2Trees/FractionCladesShared2Trees.class java/Mesquite_Folder.3.70/mesquite/treefarm/ConvexInTree/ java/Mesquite_Folder.3.70/mesquite/treefarm/ConvexInTree/ConvexInTree.class java/Mesquite_Folder.3.70/mesquite/treefarm/CutSelectedTaxa/ java/Mesquite_Folder.3.70/mesquite/treefarm/CutSelectedTaxa/CutSelectedTaxa.class 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pkg/samtools-1.7/htslib-1.7/bgzf.o pkg/samtools-1.7/htslib-1.7/bgzip pkg/samtools-1.7/htslib-1.7/bgzip.c pkg/samtools-1.7/htslib-1.7/bgzip.o pkg/samtools-1.7/htslib-1.7/config.h pkg/samtools-1.7/htslib-1.7/config.h.in pkg/samtools-1.7/htslib-1.7/config.log pkg/samtools-1.7/htslib-1.7/config.mk pkg/samtools-1.7/htslib-1.7/config.mk.in pkg/samtools-1.7/htslib-1.7/config.status pkg/samtools-1.7/htslib-1.7/configure pkg/samtools-1.7/htslib-1.7/configure.ac pkg/samtools-1.7/htslib-1.7/errmod.c pkg/samtools-1.7/htslib-1.7/errmod.o pkg/samtools-1.7/htslib-1.7/faidx.5 pkg/samtools-1.7/htslib-1.7/faidx.c pkg/samtools-1.7/htslib-1.7/faidx.o pkg/samtools-1.7/htslib-1.7/hfile.c pkg/samtools-1.7/htslib-1.7/hfile.o pkg/samtools-1.7/htslib-1.7/hfile_gcs.c pkg/samtools-1.7/htslib-1.7/hfile_gcs.o pkg/samtools-1.7/htslib-1.7/hfile_internal.h pkg/samtools-1.7/htslib-1.7/hfile_libcurl.c pkg/samtools-1.7/htslib-1.7/hfile_libcurl.o pkg/samtools-1.7/htslib-1.7/hfile_net.c pkg/samtools-1.7/htslib-1.7/hfile_net.o pkg/samtools-1.7/htslib-1.7/hfile_s3.c pkg/samtools-1.7/htslib-1.7/hfile_s3.o pkg/samtools-1.7/htslib-1.7/hts.c pkg/samtools-1.7/htslib-1.7/hts.o pkg/samtools-1.7/htslib-1.7/hts_internal.h pkg/samtools-1.7/htslib-1.7/hts_os.c pkg/samtools-1.7/htslib-1.7/hts_os.o pkg/samtools-1.7/htslib-1.7/htsfile.1 pkg/samtools-1.7/htslib-1.7/htsfile.c pkg/samtools-1.7/htslib-1.7/htslib.mk pkg/samtools-1.7/htslib-1.7/htslib.pc.in pkg/samtools-1.7/htslib-1.7/htslib.pc.tmp pkg/samtools-1.7/htslib-1.7/htslib_static.mk pkg/samtools-1.7/htslib-1.7/htslib_vars.mk pkg/samtools-1.7/htslib-1.7/kfunc.c pkg/samtools-1.7/htslib-1.7/kfunc.o pkg/samtools-1.7/htslib-1.7/knetfile.c pkg/samtools-1.7/htslib-1.7/knetfile.o pkg/samtools-1.7/htslib-1.7/kstring.c pkg/samtools-1.7/htslib-1.7/kstring.o pkg/samtools-1.7/htslib-1.7/libhts.a pkg/samtools-1.7/htslib-1.7/md5.c pkg/samtools-1.7/htslib-1.7/md5.o pkg/samtools-1.7/htslib-1.7/multipart.c pkg/samtools-1.7/htslib-1.7/multipart.o pkg/samtools-1.7/htslib-1.7/plugin.c pkg/samtools-1.7/htslib-1.7/probaln.c pkg/samtools-1.7/htslib-1.7/probaln.o pkg/samtools-1.7/htslib-1.7/realn.c pkg/samtools-1.7/htslib-1.7/realn.o pkg/samtools-1.7/htslib-1.7/regidx.c pkg/samtools-1.7/htslib-1.7/regidx.o pkg/samtools-1.7/htslib-1.7/sam.5 pkg/samtools-1.7/htslib-1.7/sam.c pkg/samtools-1.7/htslib-1.7/sam.o pkg/samtools-1.7/htslib-1.7/synced_bcf_reader.c pkg/samtools-1.7/htslib-1.7/synced_bcf_reader.o pkg/samtools-1.7/htslib-1.7/tabix.1 pkg/samtools-1.7/htslib-1.7/tabix.c pkg/samtools-1.7/htslib-1.7/tbx.c pkg/samtools-1.7/htslib-1.7/tbx.o pkg/samtools-1.7/htslib-1.7/textutils.c pkg/samtools-1.7/htslib-1.7/textutils.o pkg/samtools-1.7/htslib-1.7/textutils_internal.h pkg/samtools-1.7/htslib-1.7/thread_pool.c pkg/samtools-1.7/htslib-1.7/thread_pool.o pkg/samtools-1.7/htslib-1.7/thread_pool_internal.h pkg/samtools-1.7/htslib-1.7/vcf.5 pkg/samtools-1.7/htslib-1.7/vcf.c pkg/samtools-1.7/htslib-1.7/vcf.o pkg/samtools-1.7/htslib-1.7/vcf_sweep.c pkg/samtools-1.7/htslib-1.7/vcf_sweep.o pkg/samtools-1.7/htslib-1.7/vcfutils.c pkg/samtools-1.7/htslib-1.7/vcfutils.o pkg/samtools-1.7/htslib-1.7/version.h pkg/samtools-1.7/htslib-1.7/version.sh pkg/samtools-1.7/lz4/ pkg/samtools-1.7/lz4/LICENSE pkg/samtools-1.7/lz4/lz4.c pkg/samtools-1.7/lz4/lz4.h pkg/samtools-1.7/m4/ pkg/samtools-1.7/m4/ax_with_curses.m4 pkg/samtools-1.7/m4/ax_with_htslib.m4 pkg/samtools-1.7/misc/ pkg/samtools-1.7/misc/HmmGlocal.java pkg/samtools-1.7/misc/ace2sam.c pkg/samtools-1.7/misc/blast2sam.pl pkg/samtools-1.7/misc/bowtie2sam.pl pkg/samtools-1.7/misc/export2sam.pl pkg/samtools-1.7/misc/interpolate_sam.pl pkg/samtools-1.7/misc/maq2sam.c pkg/samtools-1.7/misc/md5fa.c pkg/samtools-1.7/misc/md5sum-lite.c pkg/samtools-1.7/misc/novo2sam.pl pkg/samtools-1.7/misc/plot-bamstats pkg/samtools-1.7/misc/psl2sam.pl pkg/samtools-1.7/misc/r2plot.lua pkg/samtools-1.7/misc/sam2vcf.pl pkg/samtools-1.7/misc/samtools.pl pkg/samtools-1.7/misc/samtools_tab_completion pkg/samtools-1.7/misc/seq_cache_populate.pl pkg/samtools-1.7/misc/soap2sam.pl pkg/samtools-1.7/misc/varfilter.py pkg/samtools-1.7/misc/vcfutils.lua pkg/samtools-1.7/misc/wgsim.1 pkg/samtools-1.7/misc/wgsim.c pkg/samtools-1.7/misc/wgsim_eval.pl pkg/samtools-1.7/misc/zoom2sam.pl pkg/samtools-1.7/samtools_manual_page_files/ pkg/samtools-1.7/samtools_manual_page_files/bootstrap.css pkg/samtools-1.7/samtools_manual_page_files/bootstrap.js pkg/samtools-1.7/samtools_manual_page_files/jquery-2.js pkg/samtools-1.7/samtools_manual_page_files/manpage.css pkg/samtools-1.7/samtools_manual_page_files/sitewide.css pkg/samtools-1.7/test/ pkg/samtools-1.7/test/addrprg/ pkg/samtools-1.7/test/addrprg/2_fixup_orphan.sam.expected pkg/samtools-1.7/test/addrprg/1_fixup.sam pkg/samtools-1.7/test/addrprg/1_fixup.sam.expected pkg/samtools-1.7/test/addrprg/1_fixup.sam.expected.err pkg/samtools-1.7/test/addrprg/2_fixup_orphan.sam pkg/samtools-1.7/test/addrprg/2_fixup_orphan.sam.expected.err pkg/samtools-1.7/test/addrprg/3_fixup.sam.expected pkg/samtools-1.7/test/addrprg/3_fixup.sam.expected.err pkg/samtools-1.7/test/addrprg/4_fixup_norg.sam pkg/samtools-1.7/test/addrprg/4_fixup_norg.sam.expected pkg/samtools-1.7/test/addrprg/4_fixup_norg.sam.expected.err pkg/samtools-1.7/test/bam2fq/ pkg/samtools-1.7/test/bam2fq/1.1.fq.expected pkg/samtools-1.7/test/bam2fq/1.2.fq.expected pkg/samtools-1.7/test/bam2fq/1.stdout.expected pkg/samtools-1.7/test/bam2fq/10.1.fq.expected pkg/samtools-1.7/test/bam2fq/10.2.fq.expected pkg/samtools-1.7/test/bam2fq/10.s.fq.expected pkg/samtools-1.7/test/bam2fq/2.1.fq.expected pkg/samtools-1.7/test/bam2fq/2.2.fq.expected pkg/samtools-1.7/test/bam2fq/2.s.fq.expected pkg/samtools-1.7/test/bam2fq/2.stdout.expected pkg/samtools-1.7/test/bam2fq/3.1.fq.expected pkg/samtools-1.7/test/bam2fq/3.2.fq.expected pkg/samtools-1.7/test/bam2fq/3.s.fq.expected pkg/samtools-1.7/test/bam2fq/3.stdout.expected pkg/samtools-1.7/test/bam2fq/4.1.fq.expected pkg/samtools-1.7/test/bam2fq/4.2.fq.expected pkg/samtools-1.7/test/bam2fq/4.s.fq.expected pkg/samtools-1.7/test/bam2fq/4.stdout.expected pkg/samtools-1.7/test/bam2fq/5.1.fq.expected pkg/samtools-1.7/test/bam2fq/5.2.fq.expected pkg/samtools-1.7/test/bam2fq/5.s.fq.expected pkg/samtools-1.7/test/bam2fq/6.1.fq.expected pkg/samtools-1.7/test/bam2fq/6.2.fq.expected pkg/samtools-1.7/test/bam2fq/6.s.fq.expected pkg/samtools-1.7/test/bam2fq/7.1.fq.expected pkg/samtools-1.7/test/bam2fq/7.2.fq.expected pkg/samtools-1.7/test/bam2fq/7.s.fq.expected pkg/samtools-1.7/test/bam2fq/8.1.fq.expected pkg/samtools-1.7/test/bam2fq/8.2.fq.expected pkg/samtools-1.7/test/bam2fq/8.i.fq.expected pkg/samtools-1.7/test/bam2fq/8.s.fq.expected pkg/samtools-1.7/test/bam2fq/9.1.fq.expected pkg/samtools-1.7/test/bam2fq/9.2.fq.expected pkg/samtools-1.7/test/bam2fq/bc.fq.expected pkg/samtools-1.7/test/bam2fq/bc10.fq.expected pkg/samtools-1.7/test/bam2fq/bc_split.fq.expected pkg/samtools-1.7/test/dat/ pkg/samtools-1.7/test/dat/cram_md5/ pkg/samtools-1.7/test/dat/cram_md5/08c04d512d4797d9ba2a156c1daba468 pkg/samtools-1.7/test/dat/cram_md5/7c35feac7036c1cdef3bee0cc4b21437 pkg/samtools-1.7/test/dat/cram_md5/89b96de7acc5918c2858ef92710be7d4 pkg/samtools-1.7/test/dat/cram_md5/8a3d8deb9edd4ce3346b6061fcee6d0b pkg/samtools-1.7/test/dat/large_chrom_bai_index.err pkg/samtools-1.7/test/dat/bam2fq.001.sam pkg/samtools-1.7/test/dat/bam2fq.002.sam pkg/samtools-1.7/test/dat/bam2fq.003.sam pkg/samtools-1.7/test/dat/bam2fq.004.sam pkg/samtools-1.7/test/dat/bam2fq.005.sam pkg/samtools-1.7/test/dat/bam2fq.010.sam pkg/samtools-1.7/test/dat/bam2fq.703.sam pkg/samtools-1.7/test/dat/cat.hdr pkg/samtools-1.7/test/dat/depad.001.fa pkg/samtools-1.7/test/dat/depad.001.fa.fai pkg/samtools-1.7/test/dat/depad.001p.sam pkg/samtools-1.7/test/dat/depad.001u.sam pkg/samtools-1.7/test/dat/dict.fa pkg/samtools-1.7/test/dat/dict.out pkg/samtools-1.7/test/dat/empty.expected pkg/samtools-1.7/test/dat/large_chrom.out pkg/samtools-1.7/test/dat/large_chrom.sam pkg/samtools-1.7/test/dat/test_input_1_a.bam.bai.expected pkg/samtools-1.7/test/dat/mpileup.1.sam pkg/samtools-1.7/test/dat/mpileup.2.sam pkg/samtools-1.7/test/dat/mpileup.3.sam pkg/samtools-1.7/test/dat/mpileup.err.1 pkg/samtools-1.7/test/dat/mpileup.out.1 pkg/samtools-1.7/test/dat/mpileup.out.2 pkg/samtools-1.7/test/dat/mpileup.out.3 pkg/samtools-1.7/test/dat/mpileup.out.4 pkg/samtools-1.7/test/dat/mpileup.ref.fa pkg/samtools-1.7/test/dat/mpileup.ref.fa.fai pkg/samtools-1.7/test/dat/test_input_1_a.bam pkg/samtools-1.7/test/dat/test_input_1_a.sam pkg/samtools-1.7/test/dat/test_input_1_a_regex.sam pkg/samtools-1.7/test/dat/test_input_1_b.bam pkg/samtools-1.7/test/dat/test_input_1_b.sam pkg/samtools-1.7/test/dat/test_input_1_b_regex.sam pkg/samtools-1.7/test/dat/test_input_1_c.bam pkg/samtools-1.7/test/dat/test_input_1_c.sam pkg/samtools-1.7/test/dat/test_input_1_d.sam pkg/samtools-1.7/test/dat/view.001.01.bed pkg/samtools-1.7/test/dat/view.001.02.bed pkg/samtools-1.7/test/dat/view.001.fa pkg/samtools-1.7/test/dat/view.001.fa.fai pkg/samtools-1.7/test/dat/view.001.sam pkg/samtools-1.7/test/dat/view.002.01.bed pkg/samtools-1.7/test/dat/view.002.02.bed pkg/samtools-1.7/test/dat/view.002.fa pkg/samtools-1.7/test/dat/view.002.fa.fai pkg/samtools-1.7/test/dat/view.002.sam pkg/samtools-1.7/test/dat/view.003.expected.sam pkg/samtools-1.7/test/dat/view.003.sam pkg/samtools-1.7/test/fixmate/ pkg/samtools-1.7/test/fixmate/1_coord_sort.sam.expected pkg/samtools-1.7/test/fixmate/1_coord_sort.sam pkg/samtools-1.7/test/fixmate/1_coord_sort.sam.expected.err pkg/samtools-1.7/test/fixmate/2_isize_overflow.sam pkg/samtools-1.7/test/fixmate/2_isize_overflow.sam.expected pkg/samtools-1.7/test/fixmate/3_reverse_read_pp_lt.sam pkg/samtools-1.7/test/fixmate/3_reverse_read_pp_lt.sam.expected pkg/samtools-1.7/test/fixmate/4_reverse_read_pp_equal.sam pkg/samtools-1.7/test/fixmate/4_reverse_read_pp_equal.sam.expected pkg/samtools-1.7/test/fixmate/5_ct.sam pkg/samtools-1.7/test/fixmate/5_ct.sam.expected pkg/samtools-1.7/test/fixmate/6_ct_replace.sam pkg/samtools-1.7/test/fixmate/6_ct_replace.sam.expected pkg/samtools-1.7/test/fixmate/7_two_read_mapped.sam pkg/samtools-1.7/test/fixmate/7_two_read_mapped.sam.expected pkg/samtools-1.7/test/idxstats/ pkg/samtools-1.7/test/idxstats/test_input_1_a.bam.expected pkg/samtools-1.7/test/idxstats/test_input_1_a.bam.expected.err pkg/samtools-1.7/test/markdup/ pkg/samtools-1.7/test/markdup/1_name_sort.expected.sam.err pkg/samtools-1.7/test/markdup/1_name_sort.expected.sam pkg/samtools-1.7/test/markdup/2_bad_order.expected.sam.err pkg/samtools-1.7/test/markdup/1_name_sort.sam pkg/samtools-1.7/test/markdup/2_bad_order.expected.sam pkg/samtools-1.7/test/markdup/3_missing_mc.expected.sam pkg/samtools-1.7/test/markdup/2_bad_order.sam pkg/samtools-1.7/test/markdup/3_missing_mc.expected.sam.err pkg/samtools-1.7/test/markdup/3_missing_mc.sam pkg/samtools-1.7/test/markdup/4_missing_ms.expected.sam pkg/samtools-1.7/test/markdup/4_missing_ms.expected.sam.err pkg/samtools-1.7/test/markdup/4_missing_ms.sam pkg/samtools-1.7/test/markdup/5_markdup.expected.sam pkg/samtools-1.7/test/markdup/5_markdup.sam pkg/samtools-1.7/test/markdup/6_remove_dups.expected.sam pkg/samtools-1.7/test/markdup/6_remove_dups.sam pkg/samtools-1.7/test/markdup/7_mark_supp_dup.expected.sam pkg/samtools-1.7/test/markdup/7_mark_supp_dup.sam pkg/samtools-1.7/test/merge/ pkg/samtools-1.7/test/merge/tag.pg.merge.expected.sam pkg/samtools-1.7/test/merge/2.merge.expected.bam pkg/samtools-1.7/test/merge/3.merge.expected.bam pkg/samtools-1.7/test/merge/3.merge.expected.err pkg/samtools-1.7/test/merge/4.merge.expected.bam pkg/samtools-1.7/test/merge/5.merge.expected.bam pkg/samtools-1.7/test/merge/5.merge.expected.sam pkg/samtools-1.7/test/merge/6.merge.expected.bam pkg/samtools-1.7/test/merge/7.merge.expected.bam pkg/samtools-1.7/test/merge/tag.pg.n.merge.expected.sam pkg/samtools-1.7/test/merge/test_3.fofn pkg/samtools-1.7/test/merge/test_bam_translate.c pkg/samtools-1.7/test/merge/test_header.sam pkg/samtools-1.7/test/merge/test_rtrans_build.c pkg/samtools-1.7/test/merge/test_trans_tbl_init.c pkg/samtools-1.7/test/mpileup/ pkg/samtools-1.7/test/mpileup/expected/ pkg/samtools-1.7/test/mpileup/expected/1.out.f3-6.gz pkg/samtools-1.7/test/mpileup/expected/10.out pkg/samtools-1.7/test/mpileup/expected/11.out pkg/samtools-1.7/test/mpileup/expected/12.out pkg/samtools-1.7/test/mpileup/expected/13.out pkg/samtools-1.7/test/mpileup/expected/14.out pkg/samtools-1.7/test/mpileup/expected/15.out pkg/samtools-1.7/test/mpileup/expected/16.out pkg/samtools-1.7/test/mpileup/expected/17.out pkg/samtools-1.7/test/mpileup/expected/18.out pkg/samtools-1.7/test/mpileup/expected/19.out pkg/samtools-1.7/test/mpileup/expected/2.out pkg/samtools-1.7/test/mpileup/expected/20.out pkg/samtools-1.7/test/mpileup/expected/21.out pkg/samtools-1.7/test/mpileup/expected/22.out pkg/samtools-1.7/test/mpileup/expected/23.out pkg/samtools-1.7/test/mpileup/expected/24.out pkg/samtools-1.7/test/mpileup/expected/25.out pkg/samtools-1.7/test/mpileup/expected/26.out pkg/samtools-1.7/test/mpileup/expected/27.out pkg/samtools-1.7/test/mpileup/expected/28.out pkg/samtools-1.7/test/mpileup/expected/29.out pkg/samtools-1.7/test/mpileup/expected/3.out pkg/samtools-1.7/test/mpileup/expected/30.out pkg/samtools-1.7/test/mpileup/expected/31.out pkg/samtools-1.7/test/mpileup/expected/32.out pkg/samtools-1.7/test/mpileup/expected/33.out pkg/samtools-1.7/test/mpileup/expected/34.out pkg/samtools-1.7/test/mpileup/expected/35.out pkg/samtools-1.7/test/mpileup/expected/37.out pkg/samtools-1.7/test/mpileup/expected/38.out pkg/samtools-1.7/test/mpileup/expected/39.out pkg/samtools-1.7/test/mpileup/expected/4.out pkg/samtools-1.7/test/mpileup/expected/40.out pkg/samtools-1.7/test/mpileup/expected/41.out pkg/samtools-1.7/test/mpileup/expected/42.out pkg/samtools-1.7/test/mpileup/expected/43.out pkg/samtools-1.7/test/mpileup/expected/44.out pkg/samtools-1.7/test/mpileup/expected/45.out pkg/samtools-1.7/test/mpileup/expected/46.out pkg/samtools-1.7/test/mpileup/expected/47.out pkg/samtools-1.7/test/mpileup/expected/48.out pkg/samtools-1.7/test/mpileup/expected/49.out pkg/samtools-1.7/test/mpileup/expected/5.out pkg/samtools-1.7/test/mpileup/expected/50.out pkg/samtools-1.7/test/mpileup/expected/51.out pkg/samtools-1.7/test/mpileup/expected/52.out pkg/samtools-1.7/test/mpileup/expected/53.out pkg/samtools-1.7/test/mpileup/expected/54.out pkg/samtools-1.7/test/mpileup/expected/55.out pkg/samtools-1.7/test/mpileup/expected/56.out pkg/samtools-1.7/test/mpileup/expected/57.out pkg/samtools-1.7/test/mpileup/expected/58.out pkg/samtools-1.7/test/mpileup/expected/59.out pkg/samtools-1.7/test/mpileup/expected/6.out pkg/samtools-1.7/test/mpileup/expected/60.out pkg/samtools-1.7/test/mpileup/expected/61.out pkg/samtools-1.7/test/mpileup/expected/62.out pkg/samtools-1.7/test/mpileup/expected/63.out pkg/samtools-1.7/test/mpileup/expected/64.out pkg/samtools-1.7/test/mpileup/expected/65.out pkg/samtools-1.7/test/mpileup/expected/66.out pkg/samtools-1.7/test/mpileup/expected/67.out pkg/samtools-1.7/test/mpileup/expected/68.out pkg/samtools-1.7/test/mpileup/expected/69.out pkg/samtools-1.7/test/mpileup/expected/7.out pkg/samtools-1.7/test/mpileup/expected/70.out pkg/samtools-1.7/test/mpileup/expected/71.out pkg/samtools-1.7/test/mpileup/expected/72.out pkg/samtools-1.7/test/mpileup/expected/73.out pkg/samtools-1.7/test/mpileup/expected/74.out pkg/samtools-1.7/test/mpileup/expected/75.out pkg/samtools-1.7/test/mpileup/expected/76.out pkg/samtools-1.7/test/mpileup/expected/77.out pkg/samtools-1.7/test/mpileup/expected/8.out pkg/samtools-1.7/test/mpileup/expected/9.out pkg/samtools-1.7/test/mpileup/expected/a0.out pkg/samtools-1.7/test/mpileup/expected/a1.out pkg/samtools-1.7/test/mpileup/expected/a10.out pkg/samtools-1.7/test/mpileup/expected/a11.out pkg/samtools-1.7/test/mpileup/expected/a13.out pkg/samtools-1.7/test/mpileup/expected/a14.out pkg/samtools-1.7/test/mpileup/expected/a15.out pkg/samtools-1.7/test/mpileup/expected/a16.out pkg/samtools-1.7/test/mpileup/expected/a17.out pkg/samtools-1.7/test/mpileup/expected/a2.out pkg/samtools-1.7/test/mpileup/expected/a3.out pkg/samtools-1.7/test/mpileup/expected/a4.out pkg/samtools-1.7/test/mpileup/expected/a5.out pkg/samtools-1.7/test/mpileup/expected/a6.out pkg/samtools-1.7/test/mpileup/expected/a8.out pkg/samtools-1.7/test/mpileup/expected/a9.out pkg/samtools-1.7/test/mpileup/expected/d1_1.out pkg/samtools-1.7/test/mpileup/expected/d1_12.out pkg/samtools-1.7/test/mpileup/expected/d1_2.out pkg/samtools-1.7/test/mpileup/expected/d2_12r.out pkg/samtools-1.7/test/mpileup/expected/d3_12.out pkg/samtools-1.7/test/mpileup/expected/d3_12r1a.out pkg/samtools-1.7/test/mpileup/expected/d3_12r2a.out pkg/samtools-1.7/test/mpileup/expected/d3_3.out pkg/samtools-1.7/test/mpileup/expected/d4_12.out pkg/samtools-1.7/test/mpileup/expected/d4_12b.out pkg/samtools-1.7/test/mpileup/expected/d4_12r.out pkg/samtools-1.7/test/mpileup/expected/d5_all1.out pkg/samtools-1.7/test/mpileup/expected/d5_all2.out pkg/samtools-1.7/test/mpileup/expected/d5_all3.out pkg/samtools-1.7/test/mpileup/expected/d5_b3.out pkg/samtools-1.7/test/mpileup/expected/d5_b3a.out pkg/samtools-1.7/test/mpileup/expected/d5_b3aa.out pkg/samtools-1.7/test/mpileup/expected/d5_blank.out pkg/samtools-1.7/test/mpileup/expected/d5_xx1.out pkg/samtools-1.7/test/mpileup/expected/d5_xx2.out pkg/samtools-1.7/test/mpileup/expected/d5_xx3.out pkg/samtools-1.7/test/mpileup/expected/d5_xy1.out pkg/samtools-1.7/test/mpileup/expected/m5_all1.out pkg/samtools-1.7/test/mpileup/expected/m5_all2.out pkg/samtools-1.7/test/mpileup/expected/m5_all3.out pkg/samtools-1.7/test/mpileup/expected/m5_b3.out pkg/samtools-1.7/test/mpileup/expected/m5_b3a.out pkg/samtools-1.7/test/mpileup/expected/m5_b3aa.out pkg/samtools-1.7/test/mpileup/expected/m5_blank.out pkg/samtools-1.7/test/mpileup/expected/m5_xx1.out pkg/samtools-1.7/test/mpileup/expected/m5_xx2.out pkg/samtools-1.7/test/mpileup/expected/m5_xx3.out pkg/samtools-1.7/test/mpileup/expected/m5_xy1.out pkg/samtools-1.7/test/mpileup/md5/ pkg/samtools-1.7/test/mpileup/md5/02099b2aad2cfe707759353724fb40ae pkg/samtools-1.7/test/mpileup/md5/0d4dfc45807d6a11439e858605cb364d pkg/samtools-1.7/test/mpileup/md5/351f64d4f4f9ddd45b35336ad97aa6de pkg/samtools-1.7/test/mpileup/md5/6ec590eb82c361a61e6baabce20109bc pkg/samtools-1.7/test/mpileup/md5/6f60cdf4c739651ae72d53e2e94825c1 pkg/samtools-1.7/test/mpileup/md5/73d180d5cb3860a2713927b6812eab0e pkg/samtools-1.7/test/mpileup/1read.bam pkg/samtools-1.7/test/mpileup/1read.sam pkg/samtools-1.7/test/mpileup/anomalous.sam pkg/samtools-1.7/test/mpileup/c1#ID.bam pkg/samtools-1.7/test/mpileup/c1#ID2.bam pkg/samtools-1.7/test/mpileup/c1#clip.bam pkg/samtools-1.7/test/mpileup/c1#pad1.bam pkg/samtools-1.7/test/mpileup/c1#pad2.bam pkg/samtools-1.7/test/mpileup/c1#pad3.bam pkg/samtools-1.7/test/mpileup/c1.fa pkg/samtools-1.7/test/mpileup/c1.fa.fai pkg/samtools-1.7/test/mpileup/ce#5b.bam pkg/samtools-1.7/test/mpileup/ce#5b.bam.bai pkg/samtools-1.7/test/mpileup/ce#5b.cram pkg/samtools-1.7/test/mpileup/ce#5b.cram.crai pkg/samtools-1.7/test/mpileup/ce#5b.sam pkg/samtools-1.7/test/mpileup/ce#large_seq.bam pkg/samtools-1.7/test/mpileup/ce#unmap.bam pkg/samtools-1.7/test/mpileup/ce#unmap1.bam pkg/samtools-1.7/test/mpileup/ce#unmap2.bam pkg/samtools-1.7/test/mpileup/ce.fa pkg/samtools-1.7/test/mpileup/ce.fa.fai pkg/samtools-1.7/test/mpileup/deep.sam pkg/samtools-1.7/test/mpileup/depth.reg pkg/samtools-1.7/test/mpileup/indels.sam pkg/samtools-1.7/test/mpileup/mpileup-E.bam pkg/samtools-1.7/test/mpileup/mpileup.1.bam pkg/samtools-1.7/test/mpileup/mpileup.1.bam.bai pkg/samtools-1.7/test/mpileup/mpileup.2.bam pkg/samtools-1.7/test/mpileup/mpileup.3.bam pkg/samtools-1.7/test/mpileup/mpileup.ref.fa pkg/samtools-1.7/test/mpileup/mpileup.ref.fa.fai pkg/samtools-1.7/test/mpileup/mpileup.reg pkg/samtools-1.7/test/mpileup/overlap50.sam pkg/samtools-1.7/test/mpileup/overlapIllumina.bam pkg/samtools-1.7/test/mpileup/regions pkg/samtools-1.7/test/mpileup/regression.sh pkg/samtools-1.7/test/mpileup/xx#depth1.sam pkg/samtools-1.7/test/mpileup/xx#depth2.sam pkg/samtools-1.7/test/mpileup/xx#depth3.sam pkg/samtools-1.7/test/mpileup/xx#minimal.bam pkg/samtools-1.7/test/mpileup/xx#triplet.bam pkg/samtools-1.7/test/mpileup/xx.bed pkg/samtools-1.7/test/mpileup/xx.bed2 pkg/samtools-1.7/test/mpileup/xx.bed3 pkg/samtools-1.7/test/mpileup/xx.fa pkg/samtools-1.7/test/mpileup/xx.fa.fai pkg/samtools-1.7/test/quickcheck/ pkg/samtools-1.7/test/quickcheck/2.quickcheck.badheader.bam pkg/samtools-1.7/test/quickcheck/1.quickcheck.badeof.bam pkg/samtools-1.7/test/quickcheck/6.quickcheck.cram21.ok.cram pkg/samtools-1.7/test/quickcheck/3.quickcheck.ok.bam pkg/samtools-1.7/test/quickcheck/4.quickcheck.ok.bam pkg/samtools-1.7/test/quickcheck/5.quickcheck.scramble30.truncated.cram pkg/samtools-1.7/test/quickcheck/7.quickcheck.cram30.ok.cram pkg/samtools-1.7/test/quickcheck/8.quickcheck.cram21.truncated.cram pkg/samtools-1.7/test/quickcheck/9.quickcheck.cram30.truncated.cram pkg/samtools-1.7/test/quickcheck/all.expected pkg/samtools-1.7/test/reheader/ pkg/samtools-1.7/test/reheader/1_view1.sam.expected pkg/samtools-1.7/test/reheader/1_view1.sam.expected.err pkg/samtools-1.7/test/reheader/2_view1.sam.expected pkg/samtools-1.7/test/reheader/2_view1.sam.expected.err pkg/samtools-1.7/test/reheader/3_view1.sam.expected pkg/samtools-1.7/test/reheader/3_view1.sam.expected.err pkg/samtools-1.7/test/reheader/hdr.sam pkg/samtools-1.7/test/sort/ pkg/samtools-1.7/test/sort/tag.rg.n.sort.expected.sam pkg/samtools-1.7/test/sort/name.sort.expected.sam pkg/samtools-1.7/test/sort/pos.sort.expected.sam pkg/samtools-1.7/test/sort/tag.as.sort.expected.sam pkg/samtools-1.7/test/sort/tag.fi.sort.expected.sam pkg/samtools-1.7/test/sort/tag.rg.sort.expected.sam pkg/samtools-1.7/test/split/ pkg/samtools-1.7/test/split/test_expand_format_string.c pkg/samtools-1.7/test/split/test_count_rg.c pkg/samtools-1.7/test/split/test_filter_header_rg.c pkg/samtools-1.7/test/split/test_parse_args.c pkg/samtools-1.7/test/stat/ pkg/samtools-1.7/test/stat/2_equal_cigar_full_seq.sam pkg/samtools-1.7/test/stat/1.stats.expected pkg/samtools-1.7/test/stat/10.stats.expected pkg/samtools-1.7/test/stat/10_map_cigar.sam pkg/samtools-1.7/test/stat/1_map_cigar.sam pkg/samtools-1.7/test/stat/10_map_cigar.sam_s1_a_1.expected.bamstat pkg/samtools-1.7/test/stat/10_map_cigar.sam_s1_b_1.expected.bamstat pkg/samtools-1.7/test/stat/2.stats.expected 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lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/biosql/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/biosql/biosql_to_biosequence.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/biosql/sequence.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/embl/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/embl/common.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/embl/embl.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/embl/embl_to_biosequence.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/embl/format_embl.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/embl/sptr.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/embl/swissprot.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/embl/trembl.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/embl/uniprot.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/embl/uniprotkb.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/fasta/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/fasta/defline.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/fasta/fasta_to_biosequence.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/fasta/format_fasta.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/fasta/format_qual.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/fasta/qual.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/fasta/qual_to_biosequence.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/fastq/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/fastq/fastq_to_biosequence.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/fastq/format_fastq.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/genbank/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/genbank/genbank_to_biosequence.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/genbank/common.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/genbank/ddbj.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/genbank/format_genbank.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/genbank/genbank.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/genbank/genpept.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/genbank/refseq.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/kegg/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/kegg/brite.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/kegg/common.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/kegg/compound.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/kegg/drug.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/kegg/enzyme.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/kegg/expression.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/kegg/genes.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/kegg/genome.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/kegg/glycan.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/kegg/keggtab.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/kegg/kgml.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/kegg/module.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/kegg/orthology.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/kegg/pathway.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/kegg/reaction.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/pdb/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/pdb/atom.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/pdb/chain.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/pdb/chemicalcomponent.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/pdb/model.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/pdb/pdb.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/pdb/residue.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/pdb/utils.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/phyloxml/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/phyloxml/phyloxml.xsd lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/phyloxml/phyloxml_elements.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/phyloxml/phyloxml_parser.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/phyloxml/phyloxml_writer.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/sanger_chromatogram/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/sanger_chromatogram/chromatogram_to_biosequence.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/sanger_chromatogram/abif.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/sanger_chromatogram/chromatogram.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/sanger_chromatogram/scf.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/aaindex.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/fantom.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/fasta.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/fastq.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/gff.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/go.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/lasergene.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/litdb.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/medline.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/nbrf.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/newick.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/nexus.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/pdb.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/prosite.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/rebase.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/soft.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/db/transfac.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/io/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/io/biosql/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/io/biosql/config/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/io/biosql/config/database.yml lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/io/biosql/ar-biosql.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/io/biosql/biosql.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/io/flatfile/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/io/flatfile/autodetection.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/io/flatfile/bdb.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/io/flatfile/buffer.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/io/flatfile/index.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/io/flatfile/indexer.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/io/flatfile/splitter.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/io/das.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/2.2.0/gems/bio-1.5.0/lib/bio/io/fastacmd.rb 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lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/irb/ext/multi-irb.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/irb/ext/save-history.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/irb/ext/tracer.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/irb/ext/use-loader.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/irb/ext/workspaces.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/irb/lc/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/irb/lc/ja/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/irb/lc/ja/encoding_aliases.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/irb/lc/ja/error.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/irb/lc/ja/help-message 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lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/net/http/requests.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/net/http/response.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/net/http/responses.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/net/ftp.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/net/http.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/net/https.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/net/imap.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/net/pop.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/net/protocol.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/net/smtp.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/net/telnet.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/openssl/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/openssl/bn.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/openssl/buffering.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/openssl/cipher.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/openssl/config.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/openssl/digest.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/openssl/ssl.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/openssl/x509.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/optparse/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/optparse/ac.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/optparse/date.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/optparse/shellwords.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/optparse/time.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/optparse/uri.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/optparse/version.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/handlers/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/handlers/document_stream.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/handlers/recorder.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/json/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/json/ruby_events.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/json/stream.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/json/tree_builder.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/json/yaml_events.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/nodes/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/nodes/alias.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/nodes/document.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/nodes/mapping.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/nodes/node.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/nodes/scalar.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/nodes/sequence.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/nodes/stream.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/visitors/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/visitors/depth_first.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/visitors/emitter.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/visitors/json_tree.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/visitors/to_ruby.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/visitors/visitor.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/visitors/yaml_tree.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/class_loader.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/coder.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/core_ext.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/deprecated.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/exception.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/handler.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/nodes.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/omap.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/parser.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/scalar_scanner.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/set.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/stream.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/streaming.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/syntax_error.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/tree_builder.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/visitors.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/psych/y.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/racc/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/racc/rdoc/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/racc/parser.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/contrib/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/contrib/compositepublisher.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/contrib/ftptools.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/contrib/publisher.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/contrib/rubyforgepublisher.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/contrib/sshpublisher.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/contrib/sys.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/ext/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/ext/core.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/ext/module.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/ext/pathname.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/ext/string.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/ext/time.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/lib/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/loaders/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/loaders/makefile.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/invocation_exception_mixin.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/alt_system.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/application.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/backtrace.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/clean.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/cloneable.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/cpu_counter.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/default_loader.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/dsl_definition.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/early_time.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/file_creation_task.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/file_list.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/file_task.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/file_utils.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/file_utils_ext.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/gempackagetask.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/invocation_chain.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/rule_recursion_overflow_error.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/late_time.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/linked_list.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/multi_task.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/name_space.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/packagetask.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/pathmap.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/phony.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/private_reader.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/promise.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/pseudo_status.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/rake_module.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/rake_test_loader.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/rdoctask.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/ruby182_test_unit_fix.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/thread_history_display.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/runtest.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/scope.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/task.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/task_argument_error.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/task_arguments.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/task_manager.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/tasklib.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/testtask.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/thread_pool.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/trace_output.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/version.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rake/win32.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rbconfig/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rbconfig/datadir.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/context/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/context/section.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/i18n/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/i18n/locale.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/i18n/text.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markdown/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markdown/entities.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markdown/literals_1_9.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/text_formatter_test_case.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/attr_changer.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/attr_span.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/attribute_manager.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/attributes.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/blank_line.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/block_quote.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/document.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/formatter.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/formatter_test_case.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/hard_break.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/heading.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/include.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/indented_paragraph.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/inline.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/list.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/list_item.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/paragraph.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/parser.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/pre_process.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/raw.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/rule.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/special.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/to_ansi.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/to_bs.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/to_html.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/to_html_crossref.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/to_html_snippet.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/to_joined_paragraph.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/to_label.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/to_markdown.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/to_rdoc.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/to_table_of_contents.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/to_test.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/to_tt_only.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup/verbatim.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/parser/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/parser/c.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/parser/changelog.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/parser/markdown.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/parser/rd.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/parser/ruby.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/parser/ruby_tools.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/parser/simple.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/parser/text.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/rd/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/rd/block_parser.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/rd/inline.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/rd/inline_parser.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/ri/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/ri/driver.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/ri/formatter.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/ri/paths.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/ri/store.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/ri/task.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/stats/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/stats/normal.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/stats/quiet.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/stats/verbose.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/alias.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/anon_class.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/any_method.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/attr.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/class_module.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/code_object.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/code_objects.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/comment.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/constant.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/context.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/cross_reference.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/encoding.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/erb_partial.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/erbio.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/extend.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/generator.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/ghost_method.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/i18n.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/include.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/known_classes.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markdown.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/markup.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/meta_method.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/method_attr.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/mixin.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/normal_class.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/normal_module.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/options.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/parser.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/rd.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/rdoc.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/require.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/ri.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/ruby_lex.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/ruby_token.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/rubygems_hook.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/servlet.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/single_class.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/stats.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/store.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/task.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/test_case.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/text.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/token_stream.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/tom_doc.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rdoc/top_level.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/dtd/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/dtd/attlistdecl.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/dtd/dtd.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/dtd/elementdecl.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/dtd/entitydecl.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/dtd/notationdecl.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/formatters/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/formatters/default.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/formatters/pretty.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/formatters/transitive.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/light/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/light/node.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/parsers/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/parsers/baseparser.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/parsers/lightparser.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/parsers/pullparser.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/parsers/sax2parser.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/parsers/streamparser.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/parsers/treeparser.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/parsers/ultralightparser.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/parsers/xpathparser.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/validation/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/validation/relaxng.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/validation/validation.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/validation/validationexception.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/undefinednamespaceexception.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/attlistdecl.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/attribute.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/cdata.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/child.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/comment.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/doctype.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/document.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/element.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/encoding.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/entity.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/functions.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/instruction.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/namespace.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/node.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/output.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/parent.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/parseexception.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/quickpath.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/rexml.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/sax2listener.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/security.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/source.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/streamlistener.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/syncenumerator.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/text.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/xmldecl.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/xmltokens.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/xpath.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rexml/xpath_parser.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rinda/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rinda/rinda.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rinda/ring.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rinda/tuplespace.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/ripper/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/ripper/core.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/ripper/filter.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/ripper/lexer.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/ripper/sexp.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/content/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/content/1.0.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/content/2.0.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/dublincore/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/dublincore/1.0.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/dublincore/2.0.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/dublincore/atom.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/maker/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/maker/0.9.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/maker/1.0.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/maker/2.0.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/maker/atom.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/maker/base.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/maker/content.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/maker/dublincore.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/maker/entry.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/maker/feed.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/maker/image.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/maker/itunes.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/maker/slash.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/maker/syndication.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/maker/taxonomy.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/maker/trackback.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/0.9.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/1.0.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/2.0.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/atom.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/content.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/converter.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/dublincore.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/image.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/itunes.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/maker.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/parser.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/rexmlparser.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/rss.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/slash.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/syndication.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/taxonomy.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/trackback.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/utils.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/xml-stylesheet.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/xml.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/xmlparser.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rss/xmlscanner.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/generate_index_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/build_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/cert_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/check_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/cleanup_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/contents_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/dependency_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/environment_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/fetch_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/help_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/install_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/list_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/lock_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/mirror_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/open_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/outdated_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/owner_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/pristine_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/push_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/query_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/rdoc_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/search_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/server_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/setup_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/sources_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/specification_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/stale_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/uninstall_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/unpack_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/update_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/which_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/commands/yank_command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/core_ext/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/core_ext/kernel_gem.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/core_ext/kernel_require.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/ext/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/ext/build_error.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/ext/builder.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/ext/cmake_builder.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/ext/configure_builder.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/ext/ext_conf_builder.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/ext/rake_builder.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/package/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/package/tar_reader/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/package/tar_reader/entry.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/package/digest_io.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/package/file_source.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/package/io_source.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/package/old.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/package/source.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/package/tar_header.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/package/tar_reader.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/package/tar_test_case.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/package/tar_writer.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/request/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/request/connection_pools.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/request/http_pool.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/request/https_pool.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/request_set/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/request_set/gem_dependency_api.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/request_set/lockfile.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/resolver/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/resolver/installed_specification.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/resolver/activation_request.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/resolver/api_set.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/resolver/api_specification.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/resolver/best_set.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/resolver/composed_set.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/resolver/conflict.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/resolver/current_set.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/resolver/dependency_request.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/resolver/git_set.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/resolver/git_specification.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/resolver/index_set.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/resolver/index_specification.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/resolver/installer_set.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/resolver/local_specification.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/resolver/lock_set.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/resolver/lock_specification.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/resolver/requirement_list.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/resolver/set.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/resolver/spec_specification.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/resolver/specification.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/resolver/stats.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/resolver/vendor_set.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/resolver/vendor_specification.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/security/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/security/policies.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/security/policy.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/security/signer.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/security/trust_dir.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/source/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/source/git.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/source/installed.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/source/local.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/source/lock.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/source/specific_file.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/source/vendor.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/ssl_certs/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/ssl_certs/Class3PublicPrimaryCertificationAuthority.pem lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/ssl_certs/AddTrustExternalCARoot-2048.pem lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/ssl_certs/AddTrustExternalCARoot.pem lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/ssl_certs/EntrustnetSecureServerCertificationAuthority.pem lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/ssl_certs/DigiCertHighAssuranceEVRootCA.pem lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/ssl_certs/GeoTrustGlobalCA.pem lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/util/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/util/list.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/util/stringio.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/install_default_message.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/available_set.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/basic_specification.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/command_manager.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/compatibility.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/config_file.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/defaults.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/dependency.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/dependency_installer.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/dependency_list.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/deprecate.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/doctor.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/errors.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/exceptions.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/ext.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/gem_runner.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/gemcutter_utilities.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/indexer.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/install_update_options.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/install_message.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/installer.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/installer_test_case.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/local_remote_options.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/mock_gem_ui.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/name_tuple.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/package.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/package_task.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/path_support.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/platform.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/psych_additions.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/psych_tree.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/rdoc.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/remote_fetcher.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/request.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/request_set.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/requirement.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/resolver.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/security.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/server.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/source.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/source_list.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/source_local.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/source_specific_file.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/spec_fetcher.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/specification.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/stub_specification.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/syck_hack.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/test_case.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/test_utilities.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/text.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/uninstaller.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/uri_formatter.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/user_interaction.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/util.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/validator.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/version.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/rubygems/version_option.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/shell/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/shell/builtin-command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/shell/command-processor.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/shell/error.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/shell/filter.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/shell/process-controller.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/shell/system-command.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/shell/version.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/syslog/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/syslog/logger.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/unicode_normalize/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/unicode_normalize/normalize.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/unicode_normalize/tables.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/uri/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/uri/common.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/uri/ftp.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/uri/generic.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/uri/http.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/uri/https.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/uri/ldap.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/uri/ldaps.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/uri/mailto.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/uri/rfc2396_parser.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/uri/rfc3986_parser.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/httpauth/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/httpauth/authenticator.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/httpauth/basicauth.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/httpauth/digestauth.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/httpauth/htdigest.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/httpauth/htgroup.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/httpauth/htpasswd.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/httpauth/userdb.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/httpservlet/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/httpservlet/abstract.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/httpservlet/cgi_runner.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/httpservlet/cgihandler.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/httpservlet/erbhandler.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/httpservlet/filehandler.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/httpservlet/prochandler.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/accesslog.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/cgi.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/compat.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/config.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/cookie.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/htmlutils.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/httpauth.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/httpproxy.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/httprequest.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/httpresponse.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/https.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/httpserver.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/httpservlet.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/httpstatus.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/httputils.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/httpversion.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/log.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/server.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/ssl.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/utils.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/webrick/version.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/digest/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/digest/bubblebabble.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/digest/md5.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/digest/rmd160.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/digest/sha1.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/digest/sha2.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/trans/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/trans/big5.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/trans/chinese.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/trans/emoji.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/trans/emoji_iso2022_kddi.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/trans/emoji_sjis_docomo.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/trans/emoji_sjis_kddi.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/trans/emoji_sjis_softbank.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/trans/escape.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/trans/gb18030.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/trans/gbk.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/trans/iso2022.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/trans/japanese.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/trans/japanese_euc.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/trans/japanese_sjis.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/trans/korean.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/trans/single_byte.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/trans/transdb.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/trans/utf8_mac.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/trans/utf_16_32.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/big5.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/cp949.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/emacs_mule.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/encdb.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/euc_jp.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/euc_kr.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/euc_tw.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/gb18030.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/gb2312.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/gbk.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/iso_8859_1.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/iso_8859_10.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/iso_8859_11.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/iso_8859_13.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/iso_8859_14.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/iso_8859_15.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/iso_8859_16.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/iso_8859_2.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/iso_8859_3.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/iso_8859_4.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/iso_8859_5.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/iso_8859_6.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/iso_8859_7.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/iso_8859_8.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/iso_8859_9.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/koi8_r.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/koi8_u.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/shift_jis.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/utf_16be.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/utf_16le.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/utf_32be.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/utf_32le.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/windows_1251.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/enc/windows_31j.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/io/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/io/console.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/io/nonblock.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/io/wait.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/json/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/json/ext/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/json/ext/generator.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/json/ext/parser.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/mathn/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/mathn/complex.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/mathn/rational.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/racc/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/racc/cparse.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/rbconfig/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/rbconfig/sizeof.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/bigdecimal.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/continuation.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/date_core.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/digest.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/etc.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/fcntl.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/fiber.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/fiddle.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/nkf.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/objspace.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/openssl.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/pathname.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/psych.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/pty.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/rbconfig.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/readline.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/ripper.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/socket.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/stringio.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/strscan.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/syslog.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/thread.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/x86_64-linux/zlib.so lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/xmlrpc/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/xmlrpc/base64.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/xmlrpc/client.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/xmlrpc/config.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/xmlrpc/create.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/xmlrpc/datetime.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/xmlrpc/marshal.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/xmlrpc/parser.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/xmlrpc/server.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/xmlrpc/utils.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/yaml/ lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/yaml/dbm.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/yaml/store.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/English.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/abbrev.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/base64.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/benchmark.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/cgi.rb 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lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/monitor.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/mutex_m.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/observer.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/open-uri.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/open3.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/openssl.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/optionparser.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/optparse.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/ostruct.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/pathname.rb lib-linux-x86_64/transrate-1.0.3-linux-x86_64/lib/app/ruby/lib/ruby/2.2.0/pp.rb 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lib-linux-x86_64/trinityrnaseq-v2.14.0/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe.diff_kmer_length.sh lib-linux-x86_64/trinityrnaseq-v2.14.0/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_no_salmon_no_cleanup.sh lib-linux-x86_64/trinityrnaseq-v2.14.0/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_trin_complete.sh lib-linux-x86_64/trinityrnaseq-v2.14.0/sample_data/test_Trinity_Assembly/misc_run_tests/__run_abundance_estimation_include_antisense.sh lib-linux-x86_64/trinityrnaseq-v2.14.0/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_include_long_reads.sh lib-linux-x86_64/trinityrnaseq-v2.14.0/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_NO_normalization.sh lib-linux-x86_64/trinityrnaseq-v2.14.0/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_with_jaccard_clip.sh lib-linux-x86_64/trinityrnaseq-v2.14.0/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_with_qual_trimming_and_normalization.sh lib-linux-x86_64/trinityrnaseq-v2.14.0/sample_data/Makefile lib-linux-x86_64/trinityrnaseq-v2.14.0/Trinity.original lib-linux-x86_64/trinityrnaseq-v2.14.0/Trinity.birch lib-linux-x86_64/trinityrnaseq-v2.14.0/README.birch lib-linux-x86_64/jre8/ lib-linux-x86_64/jre8/jre/ lib-linux-x86_64/jre8/jre/lib/ lib-linux-x86_64/jre8/jre/lib/hijrah-config-umalqura.properties lib-linux-x86_64/jre8/jre/lib/meta-index lib-linux-x86_64/jre8/jre/lib/amd64/ lib-linux-x86_64/jre8/jre/lib/amd64/liblcms.so lib-linux-x86_64/jre8/jre/lib/amd64/libmanagement.so lib-linux-x86_64/jre8/jre/lib/amd64/libsplashscreen.so lib-linux-x86_64/jre8/jre/lib/amd64/libinstrument.so lib-linux-x86_64/jre8/jre/lib/amd64/libsctp.so lib-linux-x86_64/jre8/jre/lib/amd64/jvm.cfg lib-linux-x86_64/jre8/jre/lib/amd64/libjpeg.so lib-linux-x86_64/jre8/jre/lib/amd64/libfontmanager.so lib-linux-x86_64/jre8/jre/lib/amd64/libjsig.so lib-linux-x86_64/jre8/jre/lib/amd64/libnet.so lib-linux-x86_64/jre8/jre/lib/amd64/libj2pcsc.so 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lib-linux-x86_64/libDtPrint.la lib-linux-x86_64/libDtPrint.so.1.0.0 lib-linux-x86_64/libMrm.la lib-linux-x86_64/libMrm.so.1.0.2 lib-linux-x86_64/libMrm.so.2.0.1 lib-linux-x86_64/libUil.la lib-linux-x86_64/libUil.so.1.0.2 lib-linux-x86_64/libUil.so.2.0.1 lib-linux-x86_64/libXaw7.so.7.0.0 lib-linux-x86_64/libXm.la lib-linux-x86_64/libXm.so.1.0.2 lib-linux-x86_64/libXm.so.2.1 lib-linux-x86_64/libXp.so.6.2.0 lib-linux-x86_64/libcdt.so.0.0.0 lib-linux-x86_64/libgraph.so.0.0.0 lib-linux-x86_64/libncurses.so.5.5 lib-linux-x86_64/libpathplan.so.0.0.0 lib-linux-x86_64/libpng.so.2.1.0.18 lib-linux-x86_64/libpng12.so.0.49.0 lib-linux-x86_64/sequin.libXm.so.2.mail lib-linux-x86_64/salmon.0.13/ lib-linux-x86_64/salmon.0.13/bin/ lib-linux-x86_64/salmon.0.13/bin/salmon lib-linux-x86_64/salmon.0.13/lib/ lib-linux-x86_64/salmon.0.13/lib/libgcc_s.so.1 lib-linux-x86_64/salmon.0.13/lib/libgomp.so.1 lib-linux-x86_64/salmon.0.13/lib/liblzma.so.0 lib-linux-x86_64/salmon.0.13/lib/libm.so.6 lib-linux-x86_64/salmon.0.13/lib/libtbb.so lib-linux-x86_64/salmon.0.13/lib/libtbb.so.2 lib-linux-x86_64/salmon.0.13/lib/libtbbmalloc.so lib-linux-x86_64/salmon.0.13/lib/libtbbmalloc.so.2 lib-linux-x86_64/salmon.0.13/lib/libtbbmalloc_proxy.so lib-linux-x86_64/salmon.0.13/lib/libtbbmalloc_proxy.so.2 lib-linux-x86_64/salmon.0.13/sample.ind/ lib-linux-x86_64/salmon.0.13/sample.ind/indexing.log lib-linux-x86_64/salmon.0.13/sample.ind/quasi_index.log lib-linux-x86_64/salmon.0.13/sample_data.tgz lib-linux-x86_64/README.jalview.txt Running /usr/libexec/platform-python3.6 birch_install.py Command finished execution, return status: 0 executing - python3 /home/psgendb/install-scripts/birch_install.py linux-x86_64 /home/psgendb to@be.replaced N N =========================================================== | | | Running birch_install.py | | | =========================================================== ********************Birchhome******************** Running birchhome Setting location of BIRCH home directory as /home/psgendb in /home/psgendb/admin/cshrc.source Setting location of BIRCH home directory as /home/psgendb in /home/psgendb/admin/profile.source Setting location of BIRCH home directory as /home/psgendb in /home/psgendb/admin/add_to_cshrc Setting location of BIRCH home directory as /home/psgendb in /home/psgendb/admin/add_to_login Setting location of BIRCH home directory as /home/psgendb in /home/psgendb/admin/add_to_profile Setting location of BIRCH home directory as /home/psgendb in /home/psgendb/admin/newuser.py Setting location of BIRCH home directory as /home/psgendb in /home/psgendb/admin/newuser Setting location of BIRCH home directory as /home/psgendb in /home/psgendb/dat/fasta/fastgbs Setting location of BIRCH home directory as /home/psgendb in /home/psgendb/install-scripts/htmldir.param Setting location of BIRCH home directory as /home/psgendb in /home/psgendb/install-scripts/newuser.py Setting location of BIRCH home directory as /home/psgendb in /home/psgendb/dat/fasta/fastgbs Setting location of BIRCH home directory as /home/psgendb in /home/psgendb/admin/launchers/birch.desktop Setting location of BIRCH home directory as /home/psgendb in /home/psgendb/admin.uninstall/cshrc.source Setting location of BIRCH home directory as /home/psgendb in /home/psgendb/admin.uninstall/profile.source Setting location of BIRCH home directory as /home/psgendb in /home/psgendb/java/genographer/genograph.cfg Setting location of BIRCH home directory as /home/psgendb in /home/psgendb/pkg/NCBI/.ncbirc ********************Setplatform******************** Setting birch platform to linux-x86_64 Using install dir: /home/psgendb ---------------------- UPDATING BIRCH ---------------------- Parsing BIRCH properties file Setting the URL for the local BIRCH web site to: http\://home.cc.umanitoba.ca/~psgendb Setting the BIRCH administrator's email to: psgendb@cc.umanitoba.ca Setting the URL for the local BIRCH documentation to: http\://home.cc.umanitoba.ca/~psgendb/birchhomedir getting home directory Removing launcher links rmlauncher.py: Removed launcher located at: /home/psgendb/Desktop/birch.desktop rmlauncher.py: Removed launcher located at: /home/psgendb/.local/share/applications/birch.desktop rmlauncher.py: Completed execution normally. Writing .login Writing .cshrc & .tcshrc Writing Bourne Shell .profile, .bash_profile, .zshrc, etc. Done - nobirch.py! Logout and login again so that the changes can take effect. If you wish to restore BIRCH access, type $BIRCH/admin/newuser ******************** update_local.py ******************** Running update_local.py LOCAL /home/psgendb/local LOCALGENERIC /home/psgendb/local-generic ******************** BLHelper.py ******************** Running BLHelper.py which: no iceweasel in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no epiphany in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no konqueror in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no opera in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no google-chrome in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no acroread in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no okular in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no kpdf in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no atril in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no ggv in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no gpdf in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no atril in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no pluma in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no atom in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no leafpad in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no kedit in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no jedit in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no kate in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no juffed in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no ristretto in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no xemacs in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no mate-terminal in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no qterminal in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no Eterm in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no roxterm in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no rxvt in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no emacs-terminal in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no xv in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no eom in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no gwenview in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no eyesight in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no geequie in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no mirage in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no viewnior in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no qiv in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no comix in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no abiword in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no calligrasheets in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) which: no gnumeric in (/home/psgendb/local/script:/home/psgendb/local/bin-linux-x86_64:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/bin:/opt/thinlinc/bin:/usr/bin/X11:/usr/local/sbin:/usr/sbin:/sbin:/home/psgendb/script:/home/psgendb/bin-linux-x86_64:/home/psgendb/local/pkg/EMBOSS/linux-x86_64/bin:/home/psgendb/bin) Debugging mode on ------------ Parameters from command line ------ BIRCH: /home/psgendb PLATFORM: linux-x86_64 INSTALL: False UPDATE: True SETVAR: False VNAME: VALUE: USERONLY: False Property file: /home/psgendb/local/admin/BLproperties.linux-x86_64 Update BL_Browser=firefox BL_PDFViewer=evince BL_PSViewer=evince BL_TextEditor=nedit BL_Terminal=gnome-terminal -e BL_ImageViewer=eog BL_Document=oowriter BL_Spreadsheet=oocalc - - - - - BL properties - - - - - BL_Browser,firefox BL_PDFViewer,evince BL_PSViewer,evince BL_TextEditor,nedit BL_Terminal,gnome-terminal -e BL_ImageViewer,eog BL_Document,oowriter BL_Spreadsheet,oocalc /home/psgendb/admin/BLHelper/BL_Browser_linux-x86_64.list firefox found iceweasel not found seamonkey found epiphany not found konqueror not found opera not found google-chrome not found /home/psgendb/admin/BLHelper/BL_PDFViewer_linux-x86_64.list evince found acroread not found okular not found kpdf not found atril not found xpdf found ggv not found gv found ghostview found gpdf not found /home/psgendb/admin/BLHelper/BL_PSViewer_linux-x86_64.list atril not found evince found gv found /home/psgendb/admin/BLHelper/BL_TextEditor_linux-x86_64.list nedit found pluma not found gedit_wrapper.py found gnome-text-editor found atom not found leafpad not found mousepad found kedit not found jedit not found kate not found juffed not found ristretto not found xemacs not found /home/psgendb/admin/BLHelper/BL_Terminal_linux-x86_64.list gnome-terminal found mate-terminal not found terminator found xfce4-terminal found qterminal not found Eterm not found roxterm not found rxvt not found xterm found emacs-terminal not found /home/psgendb/admin/BLHelper/BL_ImageViewer_linux-x86_64.list xv not found eog found eom not found gwenview not found eyesight not found geequie not found mirage not found viewnior not found qiv not found comix not found /home/psgendb/admin/BLHelper/BL_Document_linux-x86_64.list lowriter found oowriter found abiword not found /home/psgendb/admin/BLHelper/BL_Spreadsheet_linux-x86_64.list localc found oocalc found calligrasheets not found gnumeric not found bltable found - - - - - BL Choices - - - - - BL_Browser [['Firefox', 'firefox'], ['Seamonkey', 'seamonkey']] BL_PDFViewer [['evince', 'evince'], ['Xpdf', 'xpdf'], ['gv', 'gv'], ['Ghostview', 'ghostview']] BL_PSViewer [['evince', 'evince'], ['gv', 'gv']] BL_TextEditor [['Nedit', 'nedit'], ['Gedit', 'gedit_wrapper.py'], ['gnome-text-editor', 'gnome-text-editor'], ['Mousepad', 'mousepad']] BL_Terminal [['GNOME Terminal', 'gnome-terminal -e'], ['terminator', 'terminator -e'], ['Xfce4 terminal', 'xfce4-terminal -e'], ['xterm', 'xterm -e']] BL_ImageViewer [['Eyes of Gnome', 'eog']] BL_Document [['LibreOffice Writer', 'lowriter'], ['OpenOffice Writer', 'oowriter']] BL_Spreadsheet [['LibreOffice Calc', 'localc'], ['OpenOffice Calc', 'oocalc'], ['bltable', 'bltable']] firefox found evince found evince found nedit found gnome-terminal found eog found oowriter found oocalc found BLHelper.py : Successfully completed execution ******************** BIRCHSettings.py ******************** Running BIRCHSettings.py Debugging mode on ------------ Parameters from command line ------ BIRCH: /home/psgendb INSTALL: False UPDATE: True SETVAR: False VNAME: VALUE: Settings file: /home/psgendb/local/admin/BIRCH.settings BIRCH_PROMPT=Y BLASTDB=/home/psgendb/GenBank - - - - - BIRCH Settings - - - - - BIRCH_PROMPT,Y Update /home/psgendb/admin/Settings.default/BIRCH_PROMPT.list - - - - - BIRCH Choices - - - - - BIRCH_PROMPT [['Yes', 'Y'], ['No', 'N']] BIRCHSettings.py : Successfully completed execution ******************** blastdbkit.py ******************** Running blastdbkit.py Debugging mode on args.birchdir: /home/psgendb ------------ Parameters from command line ------ SHOWALL: False CONFIGURE: True BIRCHDIR: /home/psgendb BLASTDB: /home/psgendb/GenBank REPORTLOCAL: False REPORTFTP: False ADD: False DELETE: False UPDATE: False FTPSITE: ftp.ncbi.nih.gov DBLIST: [] Settings file: /home/psgendb/local/admin/BIRCH.settings adminEmail: psgendb@cc.umanitoba.ca - - - - - BIRCH Settings - - - - - BIRCH_PROMPT,Y BLASTDB, - - - - - BLASTDB list from /home/psgendb/admin/BLAST/BLASTDB.list- - - - - nt,{'dbtag': 'Non-redundant nucleotide (nt)', 'dbtype': 'n', 'decompress_ratio': '2.34', 'installed': '0'} refseq_rna,{'dbtag': 'RefSeq RNA', 'dbtype': 'n', 'decompress_ratio': '2.77', 'installed': '0'} refseq_select_rna,{'dbtag': 'RefSeq Select RNA', 'dbtype': 'n', 'decompress_ratio': '2.77', 'installed': '0'} human_genome,{'dbtag': 'Human Genomic - RefSeq Human chromosomal', 'dbtype': 'n', 'decompress_ratio': '1.35', 'installed': '0'} mouse_genome,{'dbtag': 'Mouse Genomic - RefSeq Mouse chromosomal', 'dbtype': 'n', 'decompress_ratio': '1.33', 'installed': '0'} ref_euk_rep_genomes,{'dbtag': 'Representative Eukaryotic Genomes', 'dbtype': 'n', 'decompress_ratio': '1.07', 'installed': '0'} ref_prok_rep_genomes,{'dbtag': 'Representative Prokaryotic Genomes', 'dbtype': 'n', 'decompress_ratio': '1.03', 'installed': '0'} ref_viroids_rep_genomes,{'dbtag': 'Representative Viroid Genomes', 'dbtype': 'n', 'decompress_ratio': '1.00', 'installed': '0'} ref_viruses_rep_genomes,{'dbtag': 'Representative Virus Genomes', 'dbtype': 'n', 'decompress_ratio': '1.05', 'installed': '0'} patnt,{'dbtag': 'Patented Nucleotide (patnt)', 'dbtype': 'n', 'decompress_ratio': '2.67', 'installed': '0'} pdbnt,{'dbtag': 'Nucleotide sequences from PDB 3D nucl. acid structures (pdbnt)', 'dbtype': 'n', 'decompress_ratio': '14.00', 'installed': '0'} 16S_ribosomal_RNA,{'dbtag': '16S ribosomal', 'dbtype': 'n', 'decompress_ratio': '2.33', 'installed': '0'} 18S_fungal_sequences,{'dbtag': '18S_fungal_sequences', 'dbtype': 'n', 'decompress_ratio': '1.00', 'installed': '0'} 28S_fungal_sequences,{'dbtag': '28S_fungal_sequences', 'dbtype': 'n', 'decompress_ratio': '3.00', 'installed': '0'} ITS_RefSeq_Fungi,{'dbtag': 'ITS_RefSeq_Fungi', 'dbtype': 'n', 'decompress_ratio': '2.50', 'installed': '0'} ITS_eukaryote_sequences,{'dbtag': 'ITS_eukaryote_sequences', 'dbtype': 'n', 'decompress_ratio': '4.11', 'installed': '0'} LSU_eukaryote_rRNA,{'dbtag': 'LSU_eukaryote_rRNA', 'dbtype': 'n', 'decompress_ratio': '2.50', 'installed': '0'} LSU_prokaryote_rRNA,{'dbtag': 'LSU_prokaryote_rRNA', 'dbtype': 'n', 'decompress_ratio': '2.00', 'installed': '0'} SSU_eukaryote_rRNA,{'dbtag': 'SSU_eukaryote_rRNA', 'dbtype': 'n', 'decompress_ratio': '3.00', 'installed': '0'} mito,{'dbtag': 'mitochondrial (mito)', 'dbtype': 'n', 'decompress_ratio': '3.00', 'installed': '0'} Betacoronavirus,{'dbtag': 'Betacoronavirus', 'dbtype': 'n', 'decompress_ratio': '3.63', 'installed': '0'} nr,{'dbtag': 'Non-redundant protein (nr)', 'dbtype': 'p', 'decompress_ratio': '4.12', 'installed': '0'} refseq_protein,{'dbtag': 'RefSeq Protein', 'dbtype': 'p', 'decompress_ratio': '3.30', 'installed': '0'} refseq_select_prot,{'dbtag': 'RefSeq Select Protein', 'dbtype': 'p', 'decompress_ratio': '3.30', 'installed': '0'} swissprot,{'dbtag': 'Uniprot (swissprot)', 'dbtype': 'p', 'decompress_ratio': '4.54', 'installed': '0'} pataa,{'dbtag': 'Patented Protein', 'dbtype': 'p', 'decompress_ratio': '1.00', 'installed': '0'} pdbaa,{'dbtag': 'Protein sequences from PDB 3D protein structures (pdbaa)', 'dbtype': 'p', 'decompress_ratio': '8.09', 'installed': '0'} landmark,{'dbtag': 'Reference proteomes (landmark)', 'dbtype': 'p', 'decompress_ratio': '2.88', 'installed': '0'} env_nt,{'dbtag': 'Metagenomic - Nucleotide (env_nt)', 'dbtype': 'N', 'decompress_ratio': '1.98', 'installed': '0'} env_nr,{'dbtag': 'Metagenomic - Protein (env_nr)', 'dbtype': 'P', 'decompress_ratio': '1.00', 'installed': '0'} taxdb,{'dbtag': 'Taxonomy (taxdb)', 'dbtype': 'O', 'decompress_ratio': '5.37', 'installed': '0'} - - - - - BLASTDB list from /home/psgendb/local/admin/BLAST/BLASTDB.list- - - - - nt,{'dbtag': 'Non-redundant nucleotide (nt)', 'dbtype': 'n', 'decompress_ratio': '2.34', 'installed': '1'} refseq_rna,{'dbtag': 'RefSeq RNA', 'dbtype': 'n', 'decompress_ratio': '2.77', 'installed': '1'} refseq_select_rna,{'dbtag': 'RefSeq Select RNA', 'dbtype': 'n', 'decompress_ratio': '2.77', 'installed': '0'} human_genome,{'dbtag': 'Human Genomic - RefSeq Human chromosomal', 'dbtype': 'n', 'decompress_ratio': '1.35', 'installed': '1'} mouse_genome,{'dbtag': 'Mouse Genomic - RefSeq Mouse chromosomal', 'dbtype': 'n', 'decompress_ratio': '1.33', 'installed': '1'} ref_euk_rep_genomes,{'dbtag': 'Representative Eukaryotic Genomes', 'dbtype': 'n', 'decompress_ratio': '1.07', 'installed': '1'} ref_prok_rep_genomes,{'dbtag': 'Representative Prokaryotic Genomes', 'dbtype': 'n', 'decompress_ratio': '1.03', 'installed': '1'} ref_viroids_rep_genomes,{'dbtag': 'Representative Viroid Genomes', 'dbtype': 'n', 'decompress_ratio': '1.00', 'installed': '1'} ref_viruses_rep_genomes,{'dbtag': 'Representative Virus Genomes', 'dbtype': 'n', 'decompress_ratio': '1.05', 'installed': '1'} patnt,{'dbtag': 'Patented Nucleotide (patnt)', 'dbtype': 'n', 'decompress_ratio': '2.67', 'installed': '1'} pdbnt,{'dbtag': 'Nucleotide sequences from PDB 3D nucl. acid structures (pdbnt)', 'dbtype': 'n', 'decompress_ratio': '14.00', 'installed': '1'} 16S_ribosomal_RNA,{'dbtag': '16S ribosomal', 'dbtype': 'n', 'decompress_ratio': '2.33', 'installed': '1'} 18S_fungal_sequences,{'dbtag': '18S_fungal_sequences', 'dbtype': 'n', 'decompress_ratio': '1.00', 'installed': '1'} 28S_fungal_sequences,{'dbtag': '28S_fungal_sequences', 'dbtype': 'n', 'decompress_ratio': '3.00', 'installed': '1'} ITS_RefSeq_Fungi,{'dbtag': 'ITS_RefSeq_Fungi', 'dbtype': 'n', 'decompress_ratio': '2.50', 'installed': '1'} ITS_eukaryote_sequences,{'dbtag': 'ITS_eukaryote_sequences', 'dbtype': 'n', 'decompress_ratio': '4.11', 'installed': '1'} LSU_eukaryote_rRNA,{'dbtag': 'LSU_eukaryote_rRNA', 'dbtype': 'n', 'decompress_ratio': '2.50', 'installed': '1'} LSU_prokaryote_rRNA,{'dbtag': 'LSU_prokaryote_rRNA', 'dbtype': 'n', 'decompress_ratio': '2.00', 'installed': '1'} SSU_eukaryote_rRNA,{'dbtag': 'SSU_eukaryote_rRNA', 'dbtype': 'n', 'decompress_ratio': '3.00', 'installed': '1'} mito,{'dbtag': 'mitochondrial (mito)', 'dbtype': 'n', 'decompress_ratio': '3.00', 'installed': '0'} Betacoronavirus,{'dbtag': 'Betacoronavirus', 'dbtype': 'n', 'decompress_ratio': '3.63', 'installed': '1'} nr,{'dbtag': 'Non-redundant protein (nr)', 'dbtype': 'p', 'decompress_ratio': '4.12', 'installed': '1'} refseq_protein,{'dbtag': 'RefSeq Protein', 'dbtype': 'p', 'decompress_ratio': '3.30', 'installed': '1'} refseq_select_prot,{'dbtag': 'RefSeq Select Protein', 'dbtype': 'p', 'decompress_ratio': '3.30', 'installed': '0'} swissprot,{'dbtag': 'Uniprot (swissprot)', 'dbtype': 'p', 'decompress_ratio': '4.54', 'installed': '1'} pataa,{'dbtag': 'Patented Protein', 'dbtype': 'p', 'decompress_ratio': '1.00', 'installed': '0'} pdbaa,{'dbtag': 'Protein sequences from PDB 3D protein structures (pdbaa)', 'dbtype': 'p', 'decompress_ratio': '8.09', 'installed': '1'} landmark,{'dbtag': 'Reference proteomes (landmark)', 'dbtype': 'p', 'decompress_ratio': '2.88', 'installed': '1'} env_nt,{'dbtag': 'Metagenomic - Nucleotide (env_nt)', 'dbtype': 'N', 'decompress_ratio': '1.98', 'installed': '1'} env_nr,{'dbtag': 'Metagenomic - Protein (env_nr)', 'dbtype': 'P', 'decompress_ratio': '1.00', 'installed': '0'} taxdb,{'dbtag': 'Taxonomy (taxdb)', 'dbtype': 'O', 'decompress_ratio': '5.37', 'installed': '1'} DBNAMES_ALL: ['nt', 'refseq_rna', 'refseq_select_rna', 'human_genome', 'mouse_genome', 'ref_euk_rep_genomes', 'ref_prok_rep_genomes', 'ref_viroids_rep_genomes', 'ref_viruses_rep_genomes', 'patnt', 'pdbnt', '16S_ribosomal_RNA', '18S_fungal_sequences', '28S_fungal_sequences', 'ITS_RefSeq_Fungi', 'ITS_eukaryote_sequences', 'LSU_eukaryote_rRNA', 'LSU_prokaryote_rRNA', 'SSU_eukaryote_rRNA', 'mito', 'Betacoronavirus', 'nr', 'refseq_protein', 'refseq_select_prot', 'swissprot', 'pataa', 'pdbaa', 'landmark', 'env_nt', 'env_nr', 'taxdb'] --------- Configure ---------- Installed: ['nt', 'refseq_rna', 'human_genome', 'mouse_genome', 'ref_euk_rep_genomes', 'ref_prok_rep_genomes', 'ref_viroids_rep_genomes', 'ref_viruses_rep_genomes', 'patnt', 'pdbnt', '16S_ribosomal_RNA', '18S_fungal_sequences', '28S_fungal_sequences', 'ITS_RefSeq_Fungi', 'ITS_eukaryote_sequences', 'LSU_eukaryote_rRNA', 'LSU_prokaryote_rRNA', 'SSU_eukaryote_rRNA', 'Betacoronavirus', 'nr', 'refseq_protein', 'swissprot', 'pdbaa', 'landmark', 'env_nt', 'taxdb'] Running CreateBLIncludes ['GCF_000001405.38_top_level.00.naa', 'GCF_000001405.38_top_level.00.nab', 'GCF_000001405.38_top_level.00.nac', 'GCF_000001405.38_top_level.00.nhr', 'GCF_000001405.38_top_level.00.nin', 'GCF_000001405.38_top_level.00.nnd', 'GCF_000001405.38_top_level.00.nni', 'GCF_000001405.38_top_level.00.nog', 'GCF_000001405.38_top_level.00.nsq', 'GCF_000001405.38_top_level.01.naa', 'GCF_000001405.38_top_level.01.nab', 'GCF_000001405.38_top_level.01.nac', 'GCF_000001405.38_top_level.01.nhr', 'GCF_000001405.38_top_level.01.nin', 'GCF_000001405.38_top_level.01.nnd', 'GCF_000001405.38_top_level.01.nni', 'GCF_000001405.38_top_level.01.nog', 'GCF_000001405.38_top_level.01.nsq', 'GCF_000001405.38_top_level.nal', 'GCF_000001405.38_top_level.ndb', 'GCF_000001405.38_top_level.nos', 'GCF_000001405.38_top_level.not', 'GCF_000001405.38_top_level.ntf', 'GCF_000001405.38_top_level.nto', 'human_genome.00.tar.gz.md5', 'human_genome.01.tar.gz.md5'] ['GCF_000001635.26_top_level.00.naa', 'GCF_000001635.26_top_level.00.nab', 'GCF_000001635.26_top_level.00.nac', 'GCF_000001635.26_top_level.00.nhr', 'GCF_000001635.26_top_level.00.nin', 'GCF_000001635.26_top_level.00.nnd', 'GCF_000001635.26_top_level.00.nni', 'GCF_000001635.26_top_level.00.nog', 'GCF_000001635.26_top_level.00.nsq', 'GCF_000001635.26_top_level.01.naa', 'GCF_000001635.26_top_level.01.nab', 'GCF_000001635.26_top_level.01.nac', 'GCF_000001635.26_top_level.01.nhr', 'GCF_000001635.26_top_level.01.nin', 'GCF_000001635.26_top_level.01.nnd', 'GCF_000001635.26_top_level.01.nni', 'GCF_000001635.26_top_level.01.nog', 'GCF_000001635.26_top_level.01.nsq', 'GCF_000001635.26_top_level.nal', 'GCF_000001635.26_top_level.ndb', 'GCF_000001635.26_top_level.nos', 'GCF_000001635.26_top_level.not', 'GCF_000001635.26_top_level.ntf', 'GCF_000001635.26_top_level.nto', 'mouse_genome.00.tar.gz.md5', 'mouse_genome.01.tar.gz.md5'] ********************Customdoc******************** Making new paramfile for customdoc Running customdoc.py /home/psgendb/public_html customdoc.py: -------- birchconfig.web.target.html customdoc.py: -------- FEATURES.html href="http\://home.cc.umanitoba.ca/~psgendb/doc/xylem/features.txt">FEATURES href="http\://home.cc.umanitoba.ca/~psgendb/doc/xylem/features.txt">FEATURES customdoc.py: -------- FETCH.html

FETCH manual pages

FETCH manual pages

customdoc.py: -------- FINDKEY.html

FINDKEY manual pages

FINDKEY manual pages

customdoc.py: -------- FSAP.html href="http\://home.cc.umanitoba.ca/~psgendb/doc/fsap/numseq.txt">NUMSEQ href="http\://home.cc.umanitoba.ca/~psgendb/doc/fsap/numseq.txt">NUMSEQ href="http\://home.cc.umanitoba.ca/~psgendb/doc/fsap/rest.txt">Restriction href="http\://home.cc.umanitoba.ca/~psgendb/doc/fsap/rest.txt">Restriction href="http\://home.cc.umanitoba.ca/~psgendb/doc/fsap/digest.txt">multiple, href="http\://home.cc.umanitoba.ca/~psgendb/doc/fsap/digest.txt">multiple, href="http\://home.cc.umanitoba.ca/~psgendb/doc/fsap/hom.txt">matrix href="http\://home.cc.umanitoba.ca/~psgendb/doc/fsap/hom.txt">matrix href="http\://home.cc.umanitoba.ca/~psgendb/doc/fsap/gel.txt">electrophoresis href="http\://home.cc.umanitoba.ca/~psgendb/doc/fsap/gel.txt">electrophoresis href="http\://home.cc.umanitoba.ca/~psgendb/doc/fsap/testcode.txt">ORF href="http\://home.cc.umanitoba.ca/~psgendb/doc/fsap/testcode.txt">ORF href="http\://home.cc.umanitoba.ca/~psgendb/doc/Ambiguity_Codes.txt">IUPAC-IUB href="http\://home.cc.umanitoba.ca/~psgendb/doc/Ambiguity_Codes.txt">IUPAC-IUB href="http://www.umanitoba.ca/faculties/afs/plant_science/psgendb/FTP/GDE/GDEresources.html">Genetic   fsap3.6.tar.gz
href="ftp://ftp.cc.umanitoba.ca/psgendb/fsap.3.5.linux-intel-bin.tar.Z"> DOS Ancilliary Documentation Pascal source Go href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">Go customdoc.py: -------- SPLITDB.html

customdoc.py: -------- UsingX11.html

BIRCHReturn

BIRCHReturn customdoc.py: -------- X11.html href="http\://home.cc.umanitoba.ca/~psgendb/doc/artemis/manual/">ARTEMIS href="http\://home.cc.umanitoba.ca/~psgendb/doc/artemis/manual/">ARTEMIS href="http\://home.cc.umanitoba.ca/~psgendb/doc/mesquite/doc/manual.html">Mesquite href="http\://home.cc.umanitoba.ca/~psgendb/doc/mesquite/doc/manual.html">Mesquite

Return to BIRCH home page href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">Return to BIRCH home page customdoc.py: -------- X54090.gen.html customdoc.py: -------- XYLEM.html
Source code and documentation ( Solaris/Sparc binaries ( Linux/Intel binaries (
Source code and documentation ( Solaris/Sparc binaries ( Linux/Intel binaries ( XYLEM

BIRCH BIRCH Return to BIRCH home Return to BIRCH home customdoc.py: -------- test1.html href="http://home.cc.umanitoba.ca/~psgendb/doc/publications.html" href="http://home.cc.umanitoba.ca/~psgendb/doc/publications.html" href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca customdoc.py: -------- citations.html customdoc.py: -------- contents.html customdoc.py: -------- devindex.html 3rd party programs.">

http\://home.cc.umanitoba.ca/~psgendb/birchhomedir
http\://home.cc.umanitoba.ca/~psgendb/birchhomedir
BIRCH 3.80 NOW AVAILABLE
 --> Connecting to Linux from Windows
First time setup, Xfce Documentation
  • GNOME Desktop
    Connecting to Linux from Windows
    First time setup, User's Guide
  • Obtaining Extra Disk Space
  • Using High Performance Compute Nodes
  • BIRCH Publications and Presentations
    • Getbirch
  • BIRCH sites at other institutions
    • should be sent to psgendb@cc.umanitoba.ca should be sent to psgendb@cc.umanitoba.ca customdoc.py: -------- downloads.html

    Return to BIRCH home href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">Return to BIRCH home href="http://www.umanitoba.ca/faculties/afs/plant_science/psgendb/FTP/GDE/GDEresources.html">GDE sent toi  psgendb@cc.umanitoba.ca

    sent toi  psgendb@cc.umanitoba.ca

    customdoc.py: -------- faq.html href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir"> href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir"> psgendb@cc.umanitoba.ca
    psgendb@cc.umanitoba.ca
    installed in /home/psgendb, you would type

    installed in /home/psgendb, you would type

    /home/psgendb/admin/newuser

    /home/psgendb/admin/newuser

    /home/psgendb, you would type

    /home/psgendb, you would type

    /home/psgendb/admin/nobirch

    /home/psgendb/admin/nobirch

    page to psgendb@cc.umanitoba.ca     page to psgendb@cc.umanitoba.ca     customdoc.py: -------- formats.html customdoc.py: -------- goto.html BIRCHReturn to BIRCH home page
    BIRCHReturn to BIRCH home page
    customdoc.py: -------- index.html
    BIRCH 3.80 NOW AVAILABLE
     --> the link below will be substituted into your BIRCH home page in the Getting Started menu. You can uncomment the link below and customize it for your system. If you have installed BIRCH on a single user PC or Mac, this file shoud be empty, or comment out the line below. --> Connecting to CCL Linux You can add as many links as you wish here for different desktops. Obviously, there is only one reasonable setup for Macs, but for Linux thare may be a choice of desktop environments. Usually you'll want to comment out all but one which applies to your system, and modify links and target pages to correspond to your system. To make changes take effect, open birchadmin and choose Documentation -> customdoc.py. Reload your web browser to see changes. --> First time setup, GNOME desktop First time setup, Xfce desktop Obtaining extra disk space Using High Performance Compute nodes href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca customdoc.py: -------- localident.html customdoc.py: -------- othersites.html MASTER BIRCH href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">Return href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">Return Send email to psgendb@cc.umanitoba.ca
    Send email to psgendb@cc.umanitoba.ca
    customdoc.py: -------- rebasecnv.html customdoc.py: -------- test3.html href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca customdoc.py: -------- test4.html href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca customdoc.py: -------- test5.html href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca News customdoc.py: -------- database.html See also - fasta manual pages ( See also - fasta manual pages ( x64 customdoc.py: -------- Fristensky.SIG.abstract.html http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/News/x64/x64.html
    style="text-decoration: underline;">http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/News/x64/x64.html
    customdoc.py: -------- x64.html href="http://www.umanitoba.ca/faculties/afs/plant_science/psgendb/FTP/GDE/GDEresources.html">GDE (http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/)
    (http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/)
    href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchadmin/birchadmin.html">http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchadmin/birchadmin.html)
    href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchadmin/birchadmin.html">http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchadmin/birchadmin.html)
    TraceView customdoc.py: -------- TraceView.html For more information, read For more information, read


    BIRCHReturn


    BIRCHReturn Using_Unix customdoc.py: -------- DISPLAY.html 

    {brassica:/home/psgendb/public_html}machines -p sas


    {brassica:/home/psgendb/public_html}machines -p sas

BIRCH WWW site: http\://home.cc.umanitoba.ca/~psgendb/birchhomedir

BIRCH WWW site: http\://home.cc.umanitoba.ca/~psgendb/birchhomedir



    If you're running     VNC,



    If you're running VNC,

customdoc.py: -------- dos2unix.html




customdoc.py: -------- saving_space.html
    
    Return

    
    Return

            list are welcome! Send email to psgendb@cc.umanitoba.ca

    list are welcome! Send email to psgendb@cc.umanitoba.ca customdoc.py: -------- telnet.html 
    BIRCH WWW site: http\://home.cc.umanitoba.ca/~psgendb/birchhomedir


    BIRCH WWW site: http\://home.cc.umanitoba.ca/~psgendb/birchhomedir


    Return


    Return

Send email to psgendb@cc.umanitoba.ca

Send email to psgendb@cc.umanitoba.ca

customdoc.py: -------- unixsummary.html
            
    $HOME
    $PWD
    $PRINTER
    $DISPLAY

    BIRCH=/home/psgendb
    export BIRCH
    echo $BIRCH
    cd $BIRCH


    EDITOR=nedit
    $EDITOR
    

            
    $HOME
    $PWD
    $PRINTER
    $DISPLAY

    BIRCH=/home/psgendb
    export BIRCH
    echo $BIRCH
    cd $BIRCH


    EDITOR=nedit
    $EDITOR
    

            
    User's home directory
    Current working directory
    User's default printer
    the screen to which a window should be dislpayed
    sets BIRCH to '/home/psgendb'
    prints the value of $BIRCH
    changes current working directory to 
    '/home/psgendb'. Export causes BIRCH to be used by all child processes of the current shell.

    sets EDITOR to 'nedit'
    launches the 'nedit' program
    

            
    User's home directory
    Current working directory
    User's default printer
    the screen to which a window should be dislpayed
    sets BIRCH to '/home/psgendb'
    prints the value of $BIRCH
    changes current working directory to 
    '/home/psgendb'. Export causes BIRCH to be used by all child processes of the current shell.

    sets EDITOR to 'nedit'
    launches the 'nedit' program
    

customdoc.py: -------- using.html
              href="https://users.cs.duke.edu/~alvy/courses/unixtut/index.html"

href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">Return

href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">Return

          href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca

          href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca

ManSummary
customdoc.py: -------- ManSummary.html
acedb
customdoc.py: -------- acedb.html
Return to BIRCH home

 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">Return to BIRCH home

customdoc.py: -------- customize.html
customdoc.py: -------- demo.html
 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/getstarted/getstarted.html#SETTING">If

 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/getstarted/getstarted.html#SETTING">If

'/home/psgendb/bin/acedemo''

'/home/psgendb/bin/acedemo''


    Return to BIRCH home

 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">Return to BIRCH home

customdoc.py: -------- installation.html


    Download the sample ACeDB database (    ftp://ftp.cc.umanitoba.ca/psgendb/labace.tar.Z,


    drwx------ 2 psgendb psgendb    512 Jun 12 11:16 bin/

drwx------ 2 psgendb psgendb    512 Jun 12 11:16 database/

-rw------- 1 psgendb psgendb 155115 Jun 12 11:12 sample.ace

drwx------ 3 psgendb psgendb    512 Jun 12 09:41 externalFiles/

drwx------ 2 psgendb psgendb    512 Jun 12 10:18 wspec/
    


    Download the Solaris2 executable files (ftp://ftp.cc.umanitoba.ca/psgendb/labace.bin.solaris.tar.Z,


    -rwx------   1 psgendb  psgendb  1115432 Jun 12 18:34 tace*

-rwx------   1 psgendb  psgendb  4054312 Jun 12 18:34 xace*
    


    BIRCHReturn


    BIRCHReturn

customdoc.py: -------- intro.html
BIRCHReturn

BIRCHReturn

pathdemo
customdoc.py: -------- installation.html

    drwx------   2 psgendb  psgendb      512 Mar 22 00:05 bin/

drwx------   2 psgendb  psgendb      512 Mar 22 00:07 database/

drwx------   2 psgendb  psgendb      512 Mar 21 23:26 externalFiles/

-rw-------   1 psgendb  psgendb     2766 Mar 22 12:44 pathways.ace

lrwxrwxrwx   1 psgendb  psgendb       25 Mar 28 19:16 whelp -> /home/psgendb/acedb/whelp/

lrwxrwxrwx   1 psgendb  psgendb       25 Mar 28 19:16 whelp -> /home/psgendb/acedb/whelp/

drwx------   2 psgendb  psgendb      512 Jun 13  1997 wspec/
    


    Download the Solaris2 executable files (ftp://ftp.cc.umanitoba.ca/psgendb/labace.bin.solaris.tar.Z,


    -rwx------   1 psgendb  psgendb  1115432 Jun 12 18:34 tace*

-rwx------   1 psgendb  psgendb  4054312 Jun 12 18:34 xace*
    

psgendb
    

Change 'psgendb' to your Unix userid.
    



    BIRCHReturn



    BIRCHReturn

bin
birchadmin
customdoc.py: -------- HelperApps.html
href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">psgendb@cc.umanitoba.ca
    

      regarding this page to psgendb@cc.umanitoba.ca
    

customdoc.py: -------- HelperAppsTechnical.html
href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">psgendb@cc.umanitoba.ca
    

      regarding this page to psgendb@cc.umanitoba.ca
    

customdoc.py: -------- Settings.html
href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">psgendb@cc.umanitoba.ca
    

      regarding this page to psgendb@cc.umanitoba.ca
    

customdoc.py: -------- SettingsTechnical.html
href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">psgendb@cc.umanitoba.ca
    

      regarding this page to psgendb@cc.umanitoba.ca
    

customdoc.py: -------- birchadmin.html
                        home.cc.umanitoba.ca="" ~psgendb=""





                      home.cc.umanitoba.ca="" ~psgendb="" birchadmin=""

                        home.cc.umanitoba.ca="" ~psgendb=""

      page to psgendb@cc.umanitoba.ca
    

      page to psgendb@cc.umanitoba.ca
    

customdoc.py: -------- birchconfigure.html


-rw-r--r--   1 psgendb  psgendb    

-rw-r--r--   1 psgendb 

psgendb      332 Feb  5 12:35

-rw-r--r--   1 psgendb 

psgendb      383 Feb  5 12:54

-rw-r--r--   1 psgendb  psgendb    

-rw-rw-rw-   1 psgendb 

psgendb        0 Dec 13 12:47

-rw-r--r--   1 psgendb 

psgendb      146 Jan  4 21:39 newstr.param
    

-rw-r--r--   1 psgendb  psgendb    

-rw-r--r--   1 psgendb  psgendb    

/home/psgendb
    


    -rw-r--r--   1 psgendb  psgendb      983 Jan  3 15:43 UNINSTALL-birch.csh
    -rwxr--r--   1 psgendb  psgendb     1066 Jan 29 13:09 birchhome.csh*
    -rw-r--r--   1 psgendb  psgendb     3690 Jan  6 18:02 customdoc.py
    -rw-r--r--   1 psgendb  psgendb       58 Jan  2 14:27 htmldir.param
    -rw-r--r--   1 psgendb  psgendb     1044 Dec 26 20:17 installation.readme
    lrwxrwxrwx   1 psgendb  psgendb       27 Jan  2 22:56 newstr.param -> ../local/admin/newstr.param
    -rw-r--r--   1 psgendb  psgendb      183 Jan  3 16:48 oldstr.param

    

 birchhome.csh will change /home/psgendb to the

'psgendb' .  public_html contains all of the BIRCH documentation

University web server to /home/psgendb. Therefore, this URL allows read

University web server to /home/psgendb. Therefore, this URL allows read

 href="http\://home.cc.umanitoba.ca/~psgendb/local/public_html/setup/setup.html"

 href="http\://home.cc.umanitoba.ca/~psgendb/local/public_html/setup/setup.html"

regarding this page to psgendb@cc.umanitoba.ca

regarding this page to psgendb@cc.umanitoba.ca

customdoc.py: -------- birchtools.html
BIRCH 
    BIRCH Administration Tools
    

BIRCH 
    BIRCH Administration Tools
    

psgendb@cc.umanitoba.ca

psgendb@cc.umanitoba.ca

customdoc.py: -------- concepts.html
 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">psgendb@cc.umanitoba.ca

page to psgendb@cc.umanitoba.ca

customdoc.py: -------- customdoc.html
      
      ~
      http://home.cc.umanitoba.ca/~psgendb
      http://www.umanitoba.ca/afs/plant_science/psgendb
      psgendb@cc.umanitoba.ca
      /home/psgendb
      psgendb
      
    

      
      ~
      http://home.cc.umanitoba.ca/~psgendb
      http://www.umanitoba.ca/afs/plant_science/psgendb
      psgendb@cc.umanitoba.ca
      /home/psgendb
      psgendb
      
    

      
      ~
      http://home.cc.umanitoba.ca/~psgendb
      file:///home/birch
      birch@tux.mb.ca
      /home/birch
      birch
      
    

        site eg.  /home/psgendb/public_html. This is

        site eg.  /home/psgendb/public_html. This is

        /home/psgendb. If symbolic links ARE allowed, you can

        /home/psgendb. If symbolic links ARE allowed, you can

href="ftp://ftp.cc.umanitoba.ca/psgendb/BIRCH/data/blreads/genome">ftp://ftp.cc.umanitoba.ca/psgendb/BIRCH/data/blreads/genome</a>.
    

        Thus, 'psgendb' would be changed to birch, at most BIRCH sites,

customdoc.py: -------- default.apps.html
      href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html">browser.csh

      psgendb@cc.umanitoba.ca
    

      psgendb@cc.umanitoba.ca
    

customdoc.py: -------- email.html
href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">

href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">

href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">psgendb@cc.umanitoba.ca

        page to psgendb@cc.umanitoba.ca

customdoc.py: -------- faq.birchadmin.html
psgendb@cc.umanitoba.ca
    

 href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca
    

message at psgendb@cc.umanitoba.ca and let me know what messages you

message at psgendb@cc.umanitoba.ca and let me know what messages you

page to psgendb@cc.umanitoba.ca

page to psgendb@cc.umanitoba.ca

customdoc.py: -------- inst.URL.html
psgendb@cc.umanitoba.ca

regarding this page to psgendb@cc.umanitoba.ca

customdoc.py: -------- inst.download.html
 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">psgendb@cc.umanitoba.ca

regarding this page to psgendb@cc.umanitoba.ca

customdoc.py: -------- inst.env.html
                        BIRCH

                        BIRCH

         this page   to psgendb@cc.umanitoba.ca 

         this page   to psgendb@cc.umanitoba.ca 

customdoc.py: -------- inst.fasta.html
psgendb@cc.umanitoba.ca

this page to psgendb@cc.umanitoba.ca

customdoc.py: -------- inst.htmldoc.html
by

 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchdoc/category/category.html">by

 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchdoc/package/package.html">by

 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchdoc/package/package.html">by

 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchdoc/program/program.html">alphabetical

 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchdoc/program/program.html">alphabetical

regarding this page to psgendb@cc.umanitoba.ca

regarding this page to psgendb@cc.umanitoba.ca

customdoc.py: -------- inst.java.html
 
    

 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir"> 
    

regarding this page to psgendb@cc.umanitoba.ca

regarding this page to psgendb@cc.umanitoba.ca

customdoc.py: -------- inst.localdocs.html
 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">psgendb@cc.umanitoba.ca

this page to psgendb@cc.umanitoba.ca

customdoc.py: -------- inst.newuser.html
psgendb@cc.umanitoba.ca 
    

regarding this page   to psgendb@cc.umanitoba.ca 
    

customdoc.py: -------- inst.nobirch.html
psgendb@cc.umanitoba.ca 
    

 href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca 
    

customdoc.py: -------- inst.pre.html
psgendb@cc.umanitoba.ca

regarding this page to psgendb@cc.umanitoba.ca

customdoc.py: -------- inst.setpath.html


-rw-r--r--   1 psgendb  psgendb    

-rw-r--r--   1 psgendb 

psgendb      332 Feb  5 12:35

-rw-r--r--   1 psgendb 

psgendb      383 Feb  5 12:54

-rw-r--r--   1 psgendb  psgendb    

-rw-rw-rw-   1 psgendb 

psgendb        0 Dec 13 12:47

-rw-r--r--   1 psgendb 

psgendb      146 Jan  4 21:39 newstr.param
    

-rw-r--r--   1 psgendb  psgendb    

-rw-r--r--   1 psgendb  psgendb    

/home/psgendb
    


    -rw-r--r--   1 psgendb  psgendb      983 Jan  3 15:43 UNINSTALL-birch.csh
    -rwxr--r--   1 psgendb  psgendb     1066 Jan 29 13:09 birchhome.csh*
    -rw-r--r--   1 psgendb  psgendb     3690 Jan  6 18:02 customdoc.py
    -rw-r--r--   1 psgendb  psgendb       58 Jan  2 14:27 htmldir.param
    -rw-r--r--   1 psgendb  psgendb     1044 Dec 26 20:17 installation.readme
    lrwxrwxrwx   1 psgendb  psgendb       27 Jan  2 22:56 newstr.param -> ../local/admin/newstr.param
    -rw-r--r--   1 psgendb  psgendb      183 Jan  3 16:48 oldstr.param

    

 birchhome.csh will change /home/psgendb to the

 href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca    

 href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca

customdoc.py: -------- inst.test.html
 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">psgendb@cc.umanitoba.ca

to psgendb@cc.umanitoba.ca

customdoc.py: -------- install.mini.html
psgendb@cc.umanitoba.ca

regarding this page to psgendb@cc.umanitoba.ca

customdoc.py: -------- install.new.html
Update

 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchadmin/install.update.html">Update

regarding this page to psgendb@cc.umanitoba.ca

regarding this page to psgendb@cc.umanitoba.ca

customdoc.py: -------- logging.html
{mira:/home/psgendb/local/admin}birchstats

{mira:/home/psgendb/local/admin}birchstats

{mira:/home/psgendb/local/admin}birchstats

{mira:/home/psgendb/local/admin}birchstats

regarding this page to psgendb@cc.umanitoba.ca

regarding this page to psgendb@cc.umanitoba.ca

customdoc.py: -------- menulist.html
customdoc.py: -------- osarch.html
href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">psgendb@cc.umanitoba.ca
    

      psgendb@cc.umanitoba.ca
    

customdoc.py: -------- override.birch.html
        href="mailto:birch@psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca

        href="mailto:birch@psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca

customdoc.py: -------- override.local.html
        href="mailto:birch@psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca

        href="mailto:birch@psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca

customdoc.py: -------- sysadmin.html
BIRCH 
    BIRCH Administration
    System Management
    

BIRCH 
    BIRCH Administration
    System Management
    

psgendb@cc.umanitoba.ca

psgendb@cc.umanitoba.ca

customdoc.py: -------- todolist.html
 psgendb@cc.umanitoba.ca

page to psgendb@cc.umanitoba.ca

customdoc.py: -------- uninstall.html
##################################################     #_BIRCH
    # cshrc.source is a file that contains setup commands  #_BIRCH
    # for BIRCH users. The source command                  #_BIRCH
    # causes it to be read and executed each time a new    #_BIRCH
    # c-shell is initiated.                                #_BIRCH
    ##################################################     #_BIRCH
    if (-e /home/psgendb/admin/cshrc.source) then          #_BIRCH
       source /home/psgendb/admin/cshrc.source             #_BIRCH
    endif                                      
    


    ##################################################     #_BIRCH
    # cshrc.source is a file that contains setup commands  #_BIRCH
    # for BIRCH users. The source command                  #_BIRCH
    # causes it to be read and executed each time a new    #_BIRCH
    # c-shell is initiated.                                #_BIRCH
    ##################################################     #_BIRCH
    if (-e /home/psgendb/admin/cshrc.source) then          #_BIRCH
       source /home/psgendb/admin/cshrc.source             #_BIRCH
    endif                                      
    

page to     psgendb@cc.umanitoba.ca

page to psgendb@cc.umanitoba.ca

customdoc.py: -------- vnc_xstartup.html
href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">psgendb@cc.umanitoba.ca
    

      psgendb@cc.umanitoba.ca
    

customdoc.py: -------- mini.links.html
If the master copy of BIRCH was in /home/psgendb, the following


    If the master copy of BIRCH was in /home/psgendb, the following


    cd $home/install-birch
    makelinks.csh /home/psgendb
    cd
    ls -l    


    cd $home/install-birch
    makelinks.csh /home/psgendb
    cd
    ls -l    

total 56
    lrwxrwxrwx   1 frist    ucalgary      26 May 13 15:56 GenBank -> /home/psgendb/GenBank
    lrwxrwxrwx   1 frist    ucalgary      26 May 13 15:56 GenPept -> /home/psgendb/GenPept
    drwxr-xr-x   2 frist    ucalgary    4096 May 13 15:08 Mail
    lrwxrwxrwx   1 frist    ucalgary      22 May 13 15:56 PIR -> /home/psgendb/PIR
    lrwxrwxrwx   1 frist    ucalgary      24 May 30 17:33 acedb -> /home/psgendb/acedb
    lrwxrwxrwx   1 frist    ucalgary      28 May 30 17:33 acedb4.9l -> /home/psgendb/acedb4.9l
    drwxr-xr-x   3 frist    ucalgary    4096 May 30 16:23 admin
    lrwxrwxrwx   1 frist    ucalgary      34 May 30 17:33 bin-linux-intel -> /home/psgendb/bin-linux-intel
    lrwxrwxrwx   1 frist    ucalgary      36 May 30 17:33 bin-solaris-sparc -> /home/psgendb/bin-solaris-sparc
    drwxr-xr-x  26 frist    ucalgary    4096 Mar 27 11:09 dat
    lrwxrwxrwx   1 frist    ucalgary      22 May 30 17:33 doc -> /home/psgendb/doc
    drwxr-xr-x   3 frist    ucalgary    4096 May 30 17:31 install-birch
    lrwxrwxrwx   1 frist    ucalgary      23 May 30 17:33 java -> /home/psgendb/java
    drwxr-xr-x  14 frist    ucalgary    4096 Dec  6 17:21 local
    lrwxrwxrwx   1 frist    ucalgary      23 May 30 17:33 manl -> /home/psgendb/manl
    lrwxrwxrwx   1 frist    ucalgary      23 May 30 17:33 ncbi -> /home/psgendb/ncbi
    lrwxrwxrwx   1 frist    ucalgary      22 May 30 17:33 pkg -> /home/psgendb/pkg
    drwxr-xr-x  24 frist    ucalgary    4096 May 30 16:47 public_html
    lrwxrwxrwx   1 frist    ucalgary      25 May 30 17:33 script -> /home/psgendb/script
    drwxr-xr-x   3 frist    ucalgary    4096 May 13 15:10 workshop


    

total 56
    lrwxrwxrwx   1 frist    ucalgary      26 May 13 15:56 GenBank -> /home/psgendb/GenBank
    lrwxrwxrwx   1 frist    ucalgary      26 May 13 15:56 GenPept -> /home/psgendb/GenPept
    drwxr-xr-x   2 frist    ucalgary    4096 May 13 15:08 Mail
    lrwxrwxrwx   1 frist    ucalgary      22 May 13 15:56 PIR -> /home/psgendb/PIR
    lrwxrwxrwx   1 frist    ucalgary      24 May 30 17:33 acedb -> /home/psgendb/acedb
    lrwxrwxrwx   1 frist    ucalgary      28 May 30 17:33 acedb4.9l -> /home/psgendb/acedb4.9l
    drwxr-xr-x   3 frist    ucalgary    4096 May 30 16:23 admin
    lrwxrwxrwx   1 frist    ucalgary      34 May 30 17:33 bin-linux-intel -> /home/psgendb/bin-linux-intel
    lrwxrwxrwx   1 frist    ucalgary      36 May 30 17:33 bin-solaris-sparc -> /home/psgendb/bin-solaris-sparc
    drwxr-xr-x  26 frist    ucalgary    4096 Mar 27 11:09 dat
    lrwxrwxrwx   1 frist    ucalgary      22 May 30 17:33 doc -> /home/psgendb/doc
    drwxr-xr-x   3 frist    ucalgary    4096 May 30 17:31 install-birch
    lrwxrwxrwx   1 frist    ucalgary      23 May 30 17:33 java -> /home/psgendb/java
    drwxr-xr-x  14 frist    ucalgary    4096 Dec  6 17:21 local
    lrwxrwxrwx   1 frist    ucalgary      23 May 30 17:33 manl -> /home/psgendb/manl
    lrwxrwxrwx   1 frist    ucalgary      23 May 30 17:33 ncbi -> /home/psgendb/ncbi
    lrwxrwxrwx   1 frist    ucalgary      22 May 30 17:33 pkg -> /home/psgendb/pkg
    drwxr-xr-x  24 frist    ucalgary    4096 May 30 16:47 public_html
    lrwxrwxrwx   1 frist    ucalgary      25 May 30 17:33 script -> /home/psgendb/script
    drwxr-xr-x   3 frist    ucalgary    4096 May 13 15:10 workshop


    

 href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca     
    

 href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca 
    

OLDDB
customdoc.py: -------- genbank.html
href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">fetch

href="http\://home.cc.umanitoba.ca/~psgendb/doc/xylem/fetch.asc">fetch

href="http:/www.umanitoba.ca/afs/plant_science/psgendb/doc/xylem/splitdb.asc">splitdb

href="http\://home.cc.umanitoba.ca/~psgendb/doc/xylem/fetch.asc">fetch,

href="http\://home.cc.umanitoba.ca/~psgendb/doc/xylem/fetch.asc">fetch,

href="http\://home.cc.umanitoba.ca/~psgendb/doc/xylem/splitdb.asc">splitdb,

href="http\://home.cc.umanitoba.ca/~psgendb/doc/xylem/splitdb.asc">splitdb,

    
    PIR   Protein Identification Resource 72.02 $00@/home/psgendb/dat/fasta/pir.fil 
    GenPept GenBank 133.0 CDS translations$01/home/psgendb/GenPept/genpept.wrp 
    GB133 Primate$1P@/home/psgendb/dat/fasta/gbpri.fil
    GB133 Rodent$1R@/home/psgendb/dat/fasta/gbrod.fil
    GB133 other Mammal$1M@/home/psgendb/dat/fasta/gbmam.fil
    GB133 verteBrates$1B@/home/psgendb/dat/fasta/gbvrt.fil
    GB133 Invertebrates$1I@/home/psgendb/dat/fasta/gbinv.fil
    GB133 pLants$1L@/home/psgendb/dat/fasta/gbpln.fil
    GB133 Expressed Sequece Tags$1E@/home/psgendb/dat/fasta/gbest.fil
    GB133 Bacteria$1T@/home/psgendb/dat/fasta/gbbct.fil
    GB133 Viral$1V@/home/psgendb/dat/fasta/gbvrl.fil
    GB133 Phage$1G@/home/psgendb/dat/fasta/gbphg.fil
    GB133 Synthetic$1Y@/home/psgendb/dat/fasta/gbsyn.fil
    GB133 Unannotated$1U@/home/psgendb/dat/fasta/gbuna.fil
    GB133 Patented$1D@/home/psgendb/dat/fasta/gbpat.fil
    GB133 STS$1X@/home/psgendb/dat/fasta/gbsts.fil
    GB133 HTG$1h@/home/psgendb/dat/fasta/gbhtg.fil
    GB133 GSS$1s@/home/psgendb/dat/fasta/gbgss.fil
    GB133 All sequences (VERY long!)$1A@/home/psgendb/dat/fasta/genbank.fil
    

    
    PIR   Protein Identification Resource 72.02 $00@/home/psgendb/dat/fasta/pir.fil 
    GenPept GenBank 133.0 CDS translations$01/home/psgendb/GenPept/genpept.wrp 
    GB133 Primate$1P@/home/psgendb/dat/fasta/gbpri.fil
    GB133 Rodent$1R@/home/psgendb/dat/fasta/gbrod.fil
    GB133 other Mammal$1M@/home/psgendb/dat/fasta/gbmam.fil
    GB133 verteBrates$1B@/home/psgendb/dat/fasta/gbvrt.fil
    GB133 Invertebrates$1I@/home/psgendb/dat/fasta/gbinv.fil
    GB133 pLants$1L@/home/psgendb/dat/fasta/gbpln.fil
    GB133 Expressed Sequece Tags$1E@/home/psgendb/dat/fasta/gbest.fil
    GB133 Bacteria$1T@/home/psgendb/dat/fasta/gbbct.fil
    GB133 Viral$1V@/home/psgendb/dat/fasta/gbvrl.fil
    GB133 Phage$1G@/home/psgendb/dat/fasta/gbphg.fil
    GB133 Synthetic$1Y@/home/psgendb/dat/fasta/gbsyn.fil
    GB133 Unannotated$1U@/home/psgendb/dat/fasta/gbuna.fil
    GB133 Patented$1D@/home/psgendb/dat/fasta/gbpat.fil
    GB133 STS$1X@/home/psgendb/dat/fasta/gbsts.fil
    GB133 HTG$1h@/home/psgendb/dat/fasta/gbhtg.fil
    GB133 GSS$1s@/home/psgendb/dat/fasta/gbgss.fil
    GB133 All sequences (VERY long!)$1A@/home/psgendb/dat/fasta/genbank.fil
    

            
    </home/psgendb/GenBank
    gbinv1.wrp 0
    gbinv2.wrp 0
    gbinv3.wrp 0
    gbinv4.wrp 0
    gbinv5.wrp 0
    

            
    </home/psgendb/GenBank
    gbinv1.wrp 0
    gbinv2.wrp 0
    gbinv3.wrp 0
    gbinv4.wrp 0
    gbinv5.wrp 0
    

href="http\://home.cc.umanitoba.ca/~psgendb/doc/fasta/fasta3x.asc">$BIRCH/doc/fasta/fasta3x.asc.
    

href="http\://home.cc.umanitoba.ca/~psgendb/doc/fasta/fasta3x.asc">$BIRCH/doc/fasta/fasta3x.asc.
    

href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchadmin/inst.GDE.html">makemenus.py

href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchadmin/inst.GDE.html">makemenus.py

        page to psgendb@cc.umanitoba.ca

        page to psgendb@cc.umanitoba.ca

customdoc.py: -------- genpept.html
splitdb

 href="http\://home.cc.umanitoba.ca/~psgendb/doc/xylem/fetch.asc">fetch,

 href="http\://home.cc.umanitoba.ca/~psgendb/doc/xylem/fetch.asc">fetch,


    PIR   Protein Identification Resource 75.02 $00@/home/psgendb/dat/fasta/pir.fil 
    GenPept GenBank 133.0 CDS translations$01/home/psgendb/GenPept/genpept.wrp 
    GB133 Primate$1P@/home/psgendb/dat/fasta/gbpri.fil
    GB133 Rodent$1R@/home/psgendb/dat/fasta/gbrod.fil
    GB133 other Mammal$1M@/home/psgendb/dat/fasta/gbmam.fil
    GB133 verteBrates$1B@/home/psgendb/dat/fasta/gbvrt.fil
    GB133 Invertebrates$1I@/home/psgendb/dat/fasta/gbinv.fil
    GB133 pLants$1L@/home/psgendb/dat/fasta/gbpln.fil
    GB133 Expressed Sequece Tags$1E@/home/psgendb/dat/fasta/gbest.fil
    GB133 Bacteria$1T@/home/psgendb/dat/fasta/gbbct.fil
    GB133 Viral$1V@/home/psgendb/dat/fasta/gbvrl.fil
    GB133 Phage$1G@/home/psgendb/dat/fasta/gbphg.fil
    GB133 Synthetic$1Y@/home/psgendb/dat/fasta/gbsyn.fil
    GB133 Unannotated$1U@/home/psgendb/dat/fasta/gbuna.fil
    GB133 Patented$1D@/home/psgendb/dat/fasta/gbpat.fil
    GB133 STS$1X@/home/psgendb/dat/fasta/gbsts.fil
    GB133 HTG$1h@/home/psgendb/dat/fasta/gbhtg.fil
    GB133 GSS$1s@/home/psgendb/dat/fasta/gbgss.fil
    GB133 All sequences (VERY long!)$1A@/home/psgendb/dat/fasta/genbank.fil
    


    PIR   Protein Identification Resource 75.02 $00@/home/psgendb/dat/fasta/pir.fil 
    GenPept GenBank 133.0 CDS translations$01/home/psgendb/GenPept/genpept.wrp 
    GB133 Primate$1P@/home/psgendb/dat/fasta/gbpri.fil
    GB133 Rodent$1R@/home/psgendb/dat/fasta/gbrod.fil
    GB133 other Mammal$1M@/home/psgendb/dat/fasta/gbmam.fil
    GB133 verteBrates$1B@/home/psgendb/dat/fasta/gbvrt.fil
    GB133 Invertebrates$1I@/home/psgendb/dat/fasta/gbinv.fil
    GB133 pLants$1L@/home/psgendb/dat/fasta/gbpln.fil
    GB133 Expressed Sequece Tags$1E@/home/psgendb/dat/fasta/gbest.fil
    GB133 Bacteria$1T@/home/psgendb/dat/fasta/gbbct.fil
    GB133 Viral$1V@/home/psgendb/dat/fasta/gbvrl.fil
    GB133 Phage$1G@/home/psgendb/dat/fasta/gbphg.fil
    GB133 Synthetic$1Y@/home/psgendb/dat/fasta/gbsyn.fil
    GB133 Unannotated$1U@/home/psgendb/dat/fasta/gbuna.fil
    GB133 Patented$1D@/home/psgendb/dat/fasta/gbpat.fil
    GB133 STS$1X@/home/psgendb/dat/fasta/gbsts.fil
    GB133 HTG$1h@/home/psgendb/dat/fasta/gbhtg.fil
    GB133 GSS$1s@/home/psgendb/dat/fasta/gbgss.fil
    GB133 All sequences (VERY long!)$1A@/home/psgendb/dat/fasta/genbank.fil
    

      
    </home/psgendb/PIR
    pir1.wrp 0
    pir2.wrp 0
    pir3.wrp 0
    pir4.wrp 0

    

      
    </home/psgendb/PIR
    pir1.wrp 0
    pir2.wrp 0
    pir3.wrp 0
    pir4.wrp 0

    

 href="http\://home.cc.umanitoba.ca/~psgendb/doc/fasta/fasta3x.asc">$BIRCH/doc/fasta/fasta3x.asc.
    

 href="http\://home.cc.umanitoba.ca/~psgendb/doc/fasta/fasta3x.asc">$BIRCH/doc/fasta/fasta3x.asc.
    

 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchadmin/inst.GDE.html">makemenus.py

 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchadmin/inst.GDE.html">makemenus.py

page to psgendb@cc.umanitoba.ca

page to psgendb@cc.umanitoba.ca

customdoc.py: -------- pir.old.html
splitdb

 href="http\://home.cc.umanitoba.ca/~psgendb/doc/xylem/fetch.asc">fetch,

 href="http\://home.cc.umanitoba.ca/~psgendb/doc/xylem/fetch.asc">fetch,


    PIR   Protein Identification Resource 75.02 $00@/home/psgendb/dat/fasta/pir.fil 
    GenPept GenBank 133.0 CDS translations$01/home/psgendb/GenPept/genpept.wrp 
    GB133 Primate$1P@/home/psgendb/dat/fasta/gbpri.fil
    GB133 Rodent$1R@/home/psgendb/dat/fasta/gbrod.fil
    GB133 other Mammal$1M@/home/psgendb/dat/fasta/gbmam.fil
    GB133 verteBrates$1B@/home/psgendb/dat/fasta/gbvrt.fil
    GB133 Invertebrates$1I@/home/psgendb/dat/fasta/gbinv.fil
    GB133 pLants$1L@/home/psgendb/dat/fasta/gbpln.fil
    GB133 Expressed Sequece Tags$1E@/home/psgendb/dat/fasta/gbest.fil
    GB133 Bacteria$1T@/home/psgendb/dat/fasta/gbbct.fil
    GB133 Viral$1V@/home/psgendb/dat/fasta/gbvrl.fil
    GB133 Phage$1G@/home/psgendb/dat/fasta/gbphg.fil
    GB133 Synthetic$1Y@/home/psgendb/dat/fasta/gbsyn.fil
    GB133 Unannotated$1U@/home/psgendb/dat/fasta/gbuna.fil
    GB133 Patented$1D@/home/psgendb/dat/fasta/gbpat.fil
    GB133 STS$1X@/home/psgendb/dat/fasta/gbsts.fil
    GB133 HTG$1h@/home/psgendb/dat/fasta/gbhtg.fil
    GB133 GSS$1s@/home/psgendb/dat/fasta/gbgss.fil
    GB133 All sequences (VERY long!)$1A@/home/psgendb/dat/fasta/genbank.fil
    


    PIR   Protein Identification Resource 75.02 $00@/home/psgendb/dat/fasta/pir.fil 
    GenPept GenBank 133.0 CDS translations$01/home/psgendb/GenPept/genpept.wrp 
    GB133 Primate$1P@/home/psgendb/dat/fasta/gbpri.fil
    GB133 Rodent$1R@/home/psgendb/dat/fasta/gbrod.fil
    GB133 other Mammal$1M@/home/psgendb/dat/fasta/gbmam.fil
    GB133 verteBrates$1B@/home/psgendb/dat/fasta/gbvrt.fil
    GB133 Invertebrates$1I@/home/psgendb/dat/fasta/gbinv.fil
    GB133 pLants$1L@/home/psgendb/dat/fasta/gbpln.fil
    GB133 Expressed Sequece Tags$1E@/home/psgendb/dat/fasta/gbest.fil
    GB133 Bacteria$1T@/home/psgendb/dat/fasta/gbbct.fil
    GB133 Viral$1V@/home/psgendb/dat/fasta/gbvrl.fil
    GB133 Phage$1G@/home/psgendb/dat/fasta/gbphg.fil
    GB133 Synthetic$1Y@/home/psgendb/dat/fasta/gbsyn.fil
    GB133 Unannotated$1U@/home/psgendb/dat/fasta/gbuna.fil
    GB133 Patented$1D@/home/psgendb/dat/fasta/gbpat.fil
    GB133 STS$1X@/home/psgendb/dat/fasta/gbsts.fil
    GB133 HTG$1h@/home/psgendb/dat/fasta/gbhtg.fil
    GB133 GSS$1s@/home/psgendb/dat/fasta/gbgss.fil
    GB133 All sequences (VERY long!)$1A@/home/psgendb/dat/fasta/genbank.fil
    

      
    </home/psgendb/PIR
    pir1.wrp 0
    pir2.wrp 0
    pir3.wrp 0
    pir4.wrp 0

    

      
    </home/psgendb/PIR
    pir1.wrp 0
    pir2.wrp 0
    pir3.wrp 0
    pir4.wrp 0

    

 href="http\://home.cc.umanitoba.ca/~psgendb/doc/fasta/fasta3x.asc">$BIRCH/doc/fasta/fasta3x.asc.
    

 href="http\://home.cc.umanitoba.ca/~psgendb/doc/fasta/fasta3x.asc">$BIRCH/doc/fasta/fasta3x.asc.
    

 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchadmin/inst.GDE.html">makemenus.py

 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchadmin/inst.GDE.html">makemenus.py

page         to psgendb@cc.umanitoba.ca 
    

page         to psgendb@cc.umanitoba.ca 
    

addprog
customdoc.py: -------- addprog.html
      regarding this page to psgendb@cc.umanitoba.ca

      regarding this page to psgendb@cc.umanitoba.ca

customdoc.py: -------- binaries.gde.html
 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchhomedir/script/sequin">$BIRCH/script/sequin,

 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchhomedir/script/sequin">$BIRCH/script/sequin,

 psgendb@cc.umanitoba.ca

 psgendb@cc.umanitoba.ca

customdoc.py: -------- binaries.html
href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchhomedir/script/sequin">$BIRCH/script/sequin,

href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchhomedir/script/sequin">$BIRCH/script/sequin,

       psgendb@cc.umanitoba.ca

       psgendb@cc.umanitoba.ca

customdoc.py: -------- gdehints.html
customdoc.py: -------- java.html
regarding this page to psgendb@cc.umanitoba.ca

regarding this page to psgendb@cc.umanitoba.ca

customdoc.py: -------- localdocs.html
 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">

 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">

 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchdoc/category/category.html">Programs

 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchdoc/category/category.html">Programs

 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchdoc/package/package.html">Programs

 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchdoc/package/package.html">Programs

 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchdoc/program/program.html">Program

 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchdoc/program/program.html">Program

 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchdoc/package/ACeDB.html">ACeDB

 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchdoc/package/ACeDB.html">ACeDB

 href="http\://home.cc.umanitoba.ca/~psgendb/doc/acedb/howto/howto.html">ACeDB

 href="http\://home.cc.umanitoba.ca/~psgendb/doc/acedb/howto/howto.html">ACeDB

 href="http\://home.cc.umanitoba.ca/~psgendb/doc/acedb/howto/howto.html">ACeDB

 href="http\://home.cc.umanitoba.ca/~psgendb/doc/acedb/howto/howto.html">ACeDB

 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchdoc/package/Staden.html">here.
    

 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchdoc/package/Staden.html">here.
    

regarding this page to psgendb@cc.umanitoba.ca

regarding this page to psgendb@cc.umanitoba.ca

customdoc.py: -------- pkg.html
regarding this page to psgendb@cc.umanitoba.ca

regarding this page to psgendb@cc.umanitoba.ca

birchconfig
customdoc.py: -------- birchconfig.new.mini.html
psgendb@cc.umanitoba.ca

regarding this page to psgendb@cc.umanitoba.ca

customdoc.py: -------- birchconfig.new.html
 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">psgendb@cc.umanitoba.ca

regarding this page to psgendb@cc.umanitoba.ca

customdoc.py: -------- birchconfig.uninstall.html
 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">##################################################     #_BIRCH
    # cshrc.source is a file that contains setup commands  #_BIRCH
    # for BIRCH users. The source command                  #_BIRCH
    # causes it to be read and executed each time a new    #_BIRCH
    # c-shell is initiated.                                #_BIRCH
    ##################################################     #_BIRCH
    if (-e /home/psgendb/admin/cshrc.source) then          #_BIRCH
       source /home/psgendb/admin/cshrc.source             #_BIRCH
    endif                                      
    

      
    ##################################################     #_BIRCH
    # cshrc.source is a file that contains setup commands  #_BIRCH
    # for BIRCH users. The source command                  #_BIRCH
    # causes it to be read and executed each time a new    #_BIRCH
    # c-shell is initiated.                                #_BIRCH
    ##################################################     #_BIRCH
    if (-e /home/psgendb/admin/cshrc.source) then          #_BIRCH
       source /home/psgendb/admin/cshrc.source             #_BIRCH
    endif                                      
    

regarding this page to psgendb@cc.umanitoba.ca

regarding this page to psgendb@cc.umanitoba.ca

customdoc.py: -------- birchconfig.update.html
 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">psgendb@cc.umanitoba.ca

regarding this page to psgendb@cc.umanitoba.ca

customdoc.py: -------- install.mini.html
psgendb@cc.umanitoba.ca

regarding this page to psgendb@cc.umanitoba.ca

customdoc.py: -------- install.new.html
 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">psgendb@cc.umanitoba.ca

regarding this page to psgendb@cc.umanitoba.ca

customdoc.py: -------- install.update.html
href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">psgendb@cc.umanitoba.ca

      regarding this page to psgendb@cc.umanitoba.ca

customdoc.py: -------- mini.download.html
psgendb@cc.umanitoba.ca

to psgendb@cc.umanitoba.ca

customdoc.py: -------- uninstall.html
 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">##################################################     #_BIRCH
    # cshrc.source is a file that contains setup commands  #_BIRCH
    # for BIRCH users. The source command                  #_BIRCH
    # causes it to be read and executed each time a new    #_BIRCH
    # c-shell is initiated.                                #_BIRCH
    ##################################################     #_BIRCH
    if (-e /home/psgendb/admin/cshrc.source) then          #_BIRCH
       source /home/psgendb/admin/cshrc.source             #_BIRCH
    endif                                      
    


    ##################################################     #_BIRCH
    # cshrc.source is a file that contains setup commands  #_BIRCH
    # for BIRCH users. The source command                  #_BIRCH
    # causes it to be read and executed each time a new    #_BIRCH
    # c-shell is initiated.                                #_BIRCH
    ##################################################     #_BIRCH
    if (-e /home/psgendb/admin/cshrc.source) then          #_BIRCH
       source /home/psgendb/admin/cshrc.source             #_BIRCH
    endif                                      
    

page to psgendb@cc.umanitoba.ca

page to psgendb@cc.umanitoba.ca

blastdb
customdoc.py: -------- BLASTDB-Add.html
        href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca.
    

        href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca.
    

customdoc.py: -------- BLASTDB-Configure.html
href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">psgendb@cc.umanitoba.ca
    

      regarding this page to psgendb@cc.umanitoba.ca
    

customdoc.py: -------- BLASTDB-Considerations.html
href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">/home/psgendb/GenBank

      regarding this page to psgendb@cc.umanitoba.ca
    

      regarding this page to psgendb@cc.umanitoba.ca
    

customdoc.py: -------- BLASTDB-DatabasesTechnical.html
href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">psgendb@cc.umanitoba.ca
    

      regarding this page to psgendb@cc.umanitoba.ca
    

customdoc.py: -------- BLASTDB-Delete.html
        href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca
    

        href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca
    

customdoc.py: -------- BLASTDB-DiskSpace.html
          -rw-r--r-- 1 psgendb psgendb 

              -rw-r--r-- 1 psgendb psgendb    330157 Mar

              -rw-r--r-- 1 psgendb psgendb 146250710 Mar 29 17:25

              -rw-r--r-- 1 psgendb psgendb   9897836 Mar 29

              -rw-r--r-- 1 psgendb psgendb   7668392 Mar 26

              -rw-r--r-- 1 psgendb psgendb     30004

              -rw-r--r-- 1 psgendb psgendb   3299280 Mar 26

              -rw-r--r-- 1 psgendb psgendb  34287591 Mar 26 06:09

              -rw-r--r-- 1 psgendb psgendb    792774 Mar

              -rw-r--r-- 1 psgendb psgendb 867970671 Mar 26 06:09

              -rw-rw-r-- 1 psgendb

              psgendb        47

      regarding this page to psgendb@cc.umanitoba.ca
    

      regarding this page to psgendb@cc.umanitoba.ca
    

customdoc.py: -------- BLASTDB-Troubleshooting.html
href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">psgendb@cc.umanitoba.ca
    

      regarding this page to psgendb@cc.umanitoba.ca
    

customdoc.py: -------- BLASTDB-Update.html
          href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca.

          href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca.

customdoc.py: -------- BLASTDB.html
        href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca
    

        href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca
    

customdoc.py: -------- BLASTDBTechnical.html
      regarding this page to psgendb@cc.umanitoba.ca
    

      regarding this page to psgendb@cc.umanitoba.ca
    

customdoc.py: -------- decompress_stats.html
custom
customdoc.py: -------- homepage.html
href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">psgendb@cc.umanitoba.ca
    

      regarding this page to psgendb@cc.umanitoba.ca
    

inst.Web
customdoc.py: -------- inst.Web.examples.html
href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">/home/psgendb/public_html
    

          /home/psgendb/public_html
    

href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">http\://home.cc.umanitoba.ca/~psgendb/birchhomedir
    

href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">http\://home.cc.umanitoba.ca/~psgendb/birchhomedir
    

              /home/psgendb
    

              /home/psgendb
    

          /www/data/faculties/afs/plant_science/psgendb

                href="http\://home.cc.umanitoba.ca/~psgendb">http\://home.cc.umanitoba.ca/~psgendb

                href="http\://home.cc.umanitoba.ca/~psgendb">http\://home.cc.umanitoba.ca/~psgendb

      regarding this page to psgendb@cc.umanitoba.ca

      regarding this page to psgendb@cc.umanitoba.ca

customdoc.py: -------- inst.Web.html
href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">http:/home.cc.umanitoba.ca/~psgendb.

    'psgendb', and is found in the

      href="http://www.umanitoba.ca/faculties/afs/plant_science/psgendb">http://www.umanitoba.ca/faculties/afs/plant_science/psgendb. 

href="http://www.umanitoba.ca/faculties/afs/plant_science/psgendb/doc/xylem/shuffle.txt">http://www.umanitoba.ca/faculties/afs/plant_science/psgendb/doc/xylem/shuffle.txt
    

      regarding this page to psgendb@cc.umanitoba.ca

      regarding this page to psgendb@cc.umanitoba.ca

dependencies
customdoc.py: -------- dependencies.html
href="http://home.cc.umanitoba.ca/~psgendb/birchdoc/program/WebLogo.html">WebLogo. 

href="http://home.cc.umanitoba.ca/~psgendb/birchdoc/program/WebLogo.html">WebLogo. 

        href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca
    

        href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca
    

custom.bak
customdoc.py: -------- homepage.html
href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">psgendb@cc.umanitoba.ca
    

      regarding this page to psgendb@cc.umanitoba.ca
    

birchdb
customdoc.py: -------- birchdb.html
'http\://home.cc.umanitoba.ca/~psgendb'. The URL for

'http\://home.cc.umanitoba.ca/~psgendb'. The URL for

'http\://home.cc.umanitoba.ca/~psgendb/doc/fsap/numseq.txt'.The

'http\://home.cc.umanitoba.ca/~psgendb/doc/fsap/numseq.txt'.The

http\://home.cc.umanitoba.ca/~psgendb/local/doc/staden/manual_unix.pdf'.

http\://home.cc.umanitoba.ca/~psgendb/local/doc/staden/manual_unix.pdf'.

customdoc.py: -------- dat2ace.html
customdoc.py: -------- doc2ace.html
customdoc.py: -------- htmldoc.html
'http\://home.cc.umanitoba.ca/~psgendb'. The URL for

'http\://home.cc.umanitoba.ca/~psgendb'. The URL for

'http\://home.cc.umanitoba.ca/~psgendb/doc/fsap/numseq.txt'.The

'http\://home.cc.umanitoba.ca/~psgendb/doc/fsap/numseq.txt'.The

http\://home.cc.umanitoba.ca/~psgendb/local/doc/staden/manual_unix.pdf'.

http\://home.cc.umanitoba.ca/~psgendb/local/doc/staden/manual_unix.pdf'.

customdoc.py: -------- lbirchdb.html
'http\://home.cc.umanitoba.ca/~psgendb'. The URL for

'http\://home.cc.umanitoba.ca/~psgendb'. The URL for

'http\://home.cc.umanitoba.ca/~psgendb/doc/fsap/numseq.txt'.The

'http\://home.cc.umanitoba.ca/~psgendb/doc/fsap/numseq.txt'.The

http\://home.cc.umanitoba.ca/~psgendb/local/doc/staden/manual_unix.pdf'.

http\://home.cc.umanitoba.ca/~psgendb/local/doc/staden/manual_unix.pdf'.

customdoc.py: -------- lgbirchdb.html
'http\://home.cc.umanitoba.ca/~psgendb'. The URL for

'http\://home.cc.umanitoba.ca/~psgendb'. The URL for

'http\://home.cc.umanitoba.ca/~psgendb/doc/fsap/numseq.txt'.The

'http\://home.cc.umanitoba.ca/~psgendb/doc/fsap/numseq.txt'.The

http\://home.cc.umanitoba.ca/~psgendb/local/doc/staden/manual_unix.pdf'.

http\://home.cc.umanitoba.ca/~psgendb/local/doc/staden/manual_unix.pdf'.

bin
database
new
oldlogs
readlocks
touched
osxprogs
wspec
CVS.bak
birchdoc
customdoc.py: -------- Alignment.template.html
customdoc.py: -------- Doc_definitions.html
page to psgendb@cc.umanitoba.ca

page to psgendb@cc.umanitoba.ca

customdoc.py: -------- Jalview.html
 href="http\://home.cc.umanitoba.ca/~psgendb/doc/jalview/help.html">$doc/jalview/help.html

 href="http\://home.cc.umanitoba.ca/~psgendb/doc/jalview/help.html">$doc/jalview/help.html

 href="http\://home.cc.umanitoba.ca/~psgendb/doc/jalview/help.html">
    

 href="http\://home.cc.umanitoba.ca/~psgendb/doc/jalview/help.html">
    

customdoc.py: -------- MCLAMP.pkg.html
 href="http\://home.cc.umanitoba.ca/~psgendb/doc/jalview/help.html">$doc/jalview/help.html
    href="http\://home.cc.umanitoba.ca/~psgendb/doc/jalview/help.html">$doc/jalview/help.html href="http\://home.cc.umanitoba.ca/~psgendb/doc/jalview/help.html">
    href="http\://home.cc.umanitoba.ca/~psgendb/doc/jalview/help.html">
    customdoc.py: -------- category.template.html customdoc.py: -------- package.template.html customdoc.py: -------- programs.template.html category customdoc.py: -------- category.html customdoc.py: -------- BIRCH - Administration.html customdoc.py: -------- Comparative Genomics.html customdoc.py: -------- Database.html customdoc.py: -------- Gel Electrophoresis.html customdoc.py: -------- Gene Expression.html customdoc.py: -------- Genetics.html customdoc.py: -------- Laboratory Information Management.html customdoc.py: -------- Molecular Markers.html customdoc.py: -------- Pathway Analysis.html customdoc.py: -------- Phylogeny.html customdoc.py: -------- Programming Tools.html customdoc.py: -------- Sequence.html customdoc.py: -------- Sequence - Annotation and Gene Discovery.html customdoc.py: -------- Sequence - Database Similarity Search.html customdoc.py: -------- Sequence - DNA Sequencing.html customdoc.py: -------- Sequence - DNA Sequencing and Assembly.html customdoc.py: -------- Sequence - File Formatting.html customdoc.py: -------- Sequence - Multiple Alignment.html customdoc.py: -------- Sequence - Oligonucleotides.html customdoc.py: -------- Sequence - Pairwise Similarity.html customdoc.py: -------- Sequence - Pattern Discovery and Matching.html customdoc.py: -------- Sequence - Phylogeny.html customdoc.py: -------- Sequence - Protein.html customdoc.py: -------- Sequence - Protein Structure.html customdoc.py: -------- Sequence - Restriction Analysis.html customdoc.py: -------- Sequence - RNA Structure.html customdoc.py: -------- Utilities.html package customdoc.py: -------- package.html customdoc.py: -------- ACeDB.html $doc/acedb/acedb-man-0.pdf $doc/acedb/acedb-man-0.pdf $doc/acedb/howto/howto.html $doc/acedb/howto/howto.html customdoc.py: -------- Babraham Bioinformatics.html customdoc.py: -------- bioLegato.html $doc/bioLegato/bioLegato_man.txt $doc/bioLegato/bioLegato_man.txt $doc/bioLegato/docs $doc/bioLegato/docs customdoc.py: -------- BIRCH.html customdoc.py: -------- Castresana.html customdoc.py: -------- CCB.html customdoc.py: -------- cd-hit.html customdoc.py: -------- CLUSTAL.html customdoc.py: -------- cutadapt.html customdoc.py: -------- Cytoscape.html customdoc.py: -------- Darling Lab.html customdoc.py: -------- DIALIGN.html customdoc.py: -------- DTU_Health_Tech.html customdoc.py: -------- Durand.html customdoc.py: -------- EBI.html customdoc.py: -------- EdwardsLab.html customdoc.py: -------- FASTA.html $doc/fasta/format.txt $doc/fasta/format.txt $doc/fasta/fasta_guide.pdf $doc/fasta/fasta_guide.pdf $doc/fasta/fasta36.1.html $doc/fasta/fasta36.1.html $doc/fasta/fasta20.pdf $doc/fasta/fasta20.pdf customdoc.py: -------- forester.html customdoc.py: -------- FSAP.html customdoc.py: -------- genographer.html customdoc.py: -------- GSC.html customdoc.py: -------- HTSLIB.html customdoc.py: -------- jellyfish.html customdoc.py: -------- LAST.html $doc/last/last-tuning.rst $doc/last/last-tuning.rst $doc/last/last-matrices.rst $doc/last/last-matrices.rst $doc/last/FAQ.rst $doc/last/FAQ.rst $doc/last/last-repeats.rst $doc/last/last-repeats.rst $doc/last/last-seeds.rst $doc/last/last-seeds.rst $doc/last/last-cookbook.rst $doc/last/last-cookbook.rst customdoc.py: -------- MAFFT.html customdoc.py: -------- Mapmaker.html $doc/mapmaker/DataPreparationGuide.txt $doc/mapmaker/DataPreparationGuide.txt customdoc.py: -------- MCLAMP.html customdoc.py: -------- Mesquite.html customdoc.py: -------- mourisl.html customdoc.py: -------- MrBayes.html customdoc.py: -------- MWC.html customdoc.py: -------- NCBI.html customdoc.py: -------- NCBI-edirect.html customdoc.py: -------- pal2nal.html customdoc.py: -------- PHYLIP.html $doc/Phylip/main.html $doc/Phylip/main.html $doc/Phylip/contchar.html $doc/Phylip/contchar.html $doc/Phylip/discrete.html $doc/Phylip/discrete.html $doc/Phylip/distance.html $doc/Phylip/distance.html $doc/Phylip/draw.html $doc/Phylip/draw.html $doc/Phylip/sequence.html 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$doc/last/maf-convert.rst $doc/last/maf-convert.rst customdoc.py: -------- maf-join.html customdoc.py: -------- maf-sort.html customdoc.py: -------- maf-swap.html customdoc.py: -------- mafft.html $doc/mafft/Manpage_of_MAFFT.html $doc/mafft/Manpage_of_MAFFT.html customdoc.py: -------- magicblast.html $doc/NCBI/magicblast.man $doc/NCBI/magicblast.man customdoc.py: -------- makeblastdb.html $doc/NCBI/makeblastdb.txt $doc/NCBI/makeblastdb.txt customdoc.py: -------- MakeCons.html $doc/bioLegato/MakeCons.help $doc/bioLegato/MakeCons.help customdoc.py: -------- makelinks.sh.html $doc/utilities/makelinks.html $doc/utilities/makelinks.html customdoc.py: -------- map_db.html $doc/fasta/map_db.html $doc/fasta/map_db.html customdoc.py: -------- Mapmaker.html $doc/mapmaker/mapmaker.refguide.pdf $doc/mapmaker/mapmaker.refguide.pdf $doc/mapmaker/mapmaker.refguide.ps $doc/mapmaker/mapmaker.refguide.ps $doc/mapmaker/mapmaker.tutorial.pdf $doc/mapmaker/mapmaker.tutorial.pdf 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$doc/bioLegato/seqfetch.html customdoc.py: -------- seqkit.html $doc/seqkit/seqkit.man $doc/seqkit/seqkit.man $doc/seqkit/seqkit_sample.man $doc/seqkit/seqkit_sample.man $doc/seqkit/seqkit_grep.man $doc/seqkit/seqkit_grep.man customdoc.py: -------- sequin.html customdoc.py: -------- SOAPdenovo-Trans.html $doc/SOAP/SOAPdenovo-Trans-UsersGuide.html $doc/SOAP/SOAPdenovo-Trans-UsersGuide.html customdoc.py: -------- SOAPdenovo2.html customdoc.py: -------- spades.html $doc/spades/manual.html $doc/spades/manual.html $doc/spades/spades.man $doc/spades/spades.man $dat/spades/test_dataset $dat/spades/test_dataset $dat/spades/test_dataset_plasmid $dat/spades/test_dataset_plasmid customdoc.py: -------- splitdb.html $doc/xylem/splitdb.txt $doc/xylem/splitdb.txt customdoc.py: -------- ssearch.html $doc/fasta/fasta36.1.html $doc/fasta/fasta36.1.html customdoc.py: -------- stringtie.html $doc/ccb/stringtie.man $doc/ccb/stringtie.man $doc/ccb/stringtie.README $doc/ccb/stringtie.README customdoc.py: -------- tace.html $doc/acedb/acedb-man-0.pdf $doc/acedb/acedb-man-0.pdf customdoc.py: -------- taxfetch.py.html $doc/bioLegato/taxfetch.html $doc/bioLegato/taxfetch.html customdoc.py: -------- tbl2asn.html $doc/NCBI/tbl2asn.man $doc/NCBI/tbl2asn.man customdoc.py: -------- tblastn.html $doc/NCBI/tblastn.txt $doc/NCBI/tblastn.txt customdoc.py: -------- tblastx.html $doc/NCBI/tblastx.txt $doc/NCBI/tblastx.txt customdoc.py: -------- testcode.html $doc/fsap/testcode.asc $doc/fsap/testcode.asc customdoc.py: -------- tfastf.html $doc/fasta/fastf3.html $doc/fasta/fastf3.html customdoc.py: -------- tfasts.html $doc/fasta/fasts3.html $doc/fasta/fasts3.html customdoc.py: -------- tfastx.html $tutorials/bioLegato/database.sim/database.sim.html $tutorials/bioLegato/database.sim/database.sim.html $doc/fasta/fasta36.1.html $doc/fasta/fasta36.1.html customdoc.py: -------- tfasty.html $tutorials/bioLegato/database.sim/database.sim.html $tutorials/bioLegato/database.sim/database.sim.html $doc/fasta/fasta36.1.html $doc/fasta/fasta36.1.html customdoc.py: -------- tmev.html $doc/MeV/MeV_quickstart_guide.pdf $doc/MeV/MeV_quickstart_guide.pdf $doc/MeV/manual/mev_manual.html $doc/MeV/manual/mev_manual.html $doc/MeV/MeV_release_notes.pdf $doc/MeV/MeV_release_notes.pdf ftp://ftp.cc.umanitoba.ca/psgendb/BIRCH/data/TMEV customdoc.py: -------- TraceView.html $doc/EBI/trace_viewer_paper.html $doc/EBI/trace_viewer_paper.html customdoc.py: -------- transrate.html $doc/pkg/transrate/transrate.man $doc/pkg/transrate/transrate.man customdoc.py: -------- treedist.html $doc/Phylip/treedist.html $doc/Phylip/treedist.html customdoc.py: -------- trim_galore.html $doc/pkg/trim_galore/Docs/Trim_Galore_User_Guide.pdf $doc/pkg/trim_galore/Docs/Trim_Galore_User_Guide.pdf $doc/pkg/trim_galore/Docs/trim_galore.man $doc/pkg/trim_galore/Docs/trim_galore.man customdoc.py: -------- Trimmomatic.html $doc/TrimmomaticManual.pdf $doc/TrimmomaticManual.pdf customdoc.py: -------- Trinity.html 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$doc/acedb/acedb-man-0.pdf $doc/acedb/acedb-man-0.pdf $doc/acedb/howto/howto.html $doc/acedb/howto/howto.html customdoc.py: -------- xtract.html $doc/NCBI/edirect/xtract.man $doc/NCBI/edirect/xtract.man $doc/NCBI/edirect/README_xtract.txt $doc/NCBI/edirect/README_xtract.txt customdoc.py: -------- xylem_shuffle.html $doc/xylem/xylem_shuffle.txt $doc/xylem/xylem_shuffle.txt cde customdoc.py: -------- cde.html

    Return

    Return customdoc.py: -------- desktop.html for users of the BIRCH for users of the BIRCH customdoc.py: -------- faq.html As mentioned elsewhere, MS-Windows As mentioned elsewhere, MS-Windows Finally, the "real Finally, the "real used to MS-Windows, you'll feel at home with CDE, used to MS-Windows, you'll feel at home with CDE, X11 applications from a hierarchical X11 applications from a hierarchical PC act as PC act as that are used with PCs. Click here that are used with PCs. Click here 

    Return to Introduction to Network Computing
    Return to Introduction to Network Computing
    customdoc.py: -------- filemgr.html customdoc.py: -------- mouse.html customdoc.py: -------- propwin.html customdoc.py: -------- terminal.html the host and current directory are shown in the Unix prompt: {brassica:/home/psgendb/public_html/cde}. the host and current directory are shown in the Unix prompt: {brassica:/home/psgendb/public_html/cde}. customdoc.py: -------- textedit.html customdoc.py: -------- wrkspmenu.html cgi-bin getstarted customdoc.py: -------- computer.html customdoc.py: -------- getstarted.html customdoc.py: -------- remote.html Return to BIRCH home href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir"> Return to BIRCH home Return to BIRCH home href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir"> Return to BIRCH home hardware customdoc.py: -------- audio.html
    Return
    Return to psgendb@cc.umanitoba.ca
    to psgendb@cc.umanitoba.ca
    customdoc.py: -------- hardware.html

    Return

    Return to psgendb@cc.umanitoba.ca
    to psgendb@cc.umanitoba.ca
    howto images nc customdoc.py: -------- STPC.html http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/nc/STPC.html http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/nc/STPC.html return to Network Computing: return to Network Computing:
    http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/nc
    http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/nc

    return to Network

    return to Network
    http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/nc
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    Return

    Return Finally, the "real Finally, the "real used to MS-Windows, you'll feel at home with CDE, used to MS-Windows, you'll feel at home with CDE, from a hierarchical from a hierarchical it. It can't hurt to ask! To cite a concrete example, the BIRCH it. It can't hurt to ask! To cite a concrete example, the BIRCH that can be installed on existing PCs that effectively let the PC that can be installed on existing PCs that effectively let the PC that are used with PCs. Click here that are used with PCs. Click here 

    Return to Introduction to Network Computing
    Return to Introduction to Network Computing
    customdoc.py: -------- fatclient.html customdoc.py: -------- future1.html customdoc.py: -------- index.html
    http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/nc
    http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/nc
    customdoc.py: -------- ncdevice.html customdoc.py: -------- pcdevice.html customdoc.py: -------- philosophy.html customdoc.py: -------- recommendation.html BIRCH. The BIRCH. The customdoc.py: -------- screens.html

    Below are shown two sample screens, using the CDE

    Below are shown two sample screens, using the CDE Pro for MS-Windows using Wabi The user can go from window Pro for MS-Windows using Wabi The user can go from window

    On this screen, DNA sequences are being analyzed using the Genetic

    On this screen, DNA sequences are being analyzed using the Genetic an ACEDB an ACEDB lab. The Netscape window is set to home page for the BIRCH, a resource for molecular biology lab. The Netscape window is set to home page for the BIRCH, a resource for molecular biology customdoc.py: -------- thinclient.html href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">Molecular Biology: href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">Molecular Biology: customdoc.py: -------- xterm.html

    Return to BIRCH home page href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">Return to BIRCH home page Send email to psgendb@cc.umanitoba.ca
    Send email to psgendb@cc.umanitoba.ca
    newuser customdoc.py: -------- setup.newuser.html href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir"> href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir"> 

    /home/psgendb/admin/newuser
    /home/psgendb/admin/newuser
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    /home/psgendb/admin/nobirch

    /home/psgendb/admin/nobirch
    quickintro customdoc.py: -------- quickintro.html href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/nc/">for more information href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/nc/">for more information be sent toi psgendb@cc.umanitoba.ca     be sent toi psgendb@cc.umanitoba.ca     remote customdoc.py: -------- remote.html href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir"> href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir"> href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir"> href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir"> commandline desktop customdoc.py: -------- desktop.html href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">psgendb@cc.umanitoba.ca this page to psgendb@cc.umanitoba.ca sgd customdoc.py: -------- sgd.html BIRCHBIRCHBIRCHBIRCHBIRCHBIRCHReturn to BIRCH home page href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">Return to BIRCH home page customdoc.py: -------- vnc.faq.html href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">Return href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">Return customdoc.py: -------- vnc.html href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">Return href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">Return vncserver customdoc.py: -------- vncserver.html BIRCHBIRCHReturn to Return to

    BIRCHBIRCHReturn to BIRCH home page href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">Return to BIRCH home page xterm customdoc.py: -------- xterm.html BIRCHBIRCHReturn href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/remote/desktop/xterm/xterm.html">Return

    BIRCHBIRCHReturn to BIRCH home page href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir">Return to BIRCH home page thinclient wsftp treetool customdoc.py: -------- treetool.html tutorials customdoc.py: -------- HTML-Tips.html NCBI PrimerBlast customdoc.py: -------- PrimerBlast.html PrimerBlast.bak1 customdoc.py: -------- PrimerBlast.html antifreeze artemis dnaplotter customdoc.py: -------- dnaplotter.html href="http\://home.cc.umanitoba.ca/~psgendb/doc/artemis/Module_1_Artemis_Hinxton2014-1.pdf">Hinxton href="http\://home.cc.umanitoba.ca/~psgendb/doc/artemis/Module_1_Artemis_Hinxton2014-1.pdf">Hinxton customdoc.py: -------- fea2tsv.html href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/artemis/artemis-manual.pdf"> href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/artemis/artemis-manual.pdf"> href="http://home.cc.umanitoba.ca/~psgendb/tutorials/artemis/artemis-manual.pdf">ARTEMIS visualization customdoc.py: -------- visualization.html bioLegato customdoc.py: -------- bigjobs.html customdoc.py: -------- bioLegato.html customdoc.py: -------- biolegato.bugs.html blastdb customdoc.py: -------- SRAAFP-RefSeqRNA.blastn.html XM_028577118.1 PREDICTED: Perca flavescens type-2 ice-structurin... 94.9 1e-15 XM_028577118.1 PREDICTED: Perca flavescens type-2 ice-structurin... 94.9 1e-15 XM_028577120.1 PREDICTED: Perca flavescens type-2 ice-structurin... 89.1 6e-14 XM_028577120.1 PREDICTED: Perca flavescens type-2 ice-structurin... 89.1 6e-14 XM_028577119.1 PREDICTED: Perca flavescens type-2 ice-structurin... 89.1 6e-14 XM_028577119.1 PREDICTED: Perca flavescens type-2 ice-structurin... 89.1 6e-14 XM_028577117.1 PREDICTED: Perca flavescens type-2 ice-structurin... 89.1 6e-14 XM_028577117.1 PREDICTED: Perca flavescens type-2 ice-structurin... 89.1 6e-14 XM_028564253.1 PREDICTED: Perca flavescens type-2 ice-structurin... 85.3 8e-13 XM_028564253.1 PREDICTED: Perca flavescens type-2 ice-structurin... 85.3 8e-13 XM_028564599.1 PREDICTED: Perca flavescens galactose-specific le... 81.4 1e-11 XM_028564599.1 PREDICTED: Perca flavescens galactose-specific le... 81.4 1e-11 XM_028564252.1 PREDICTED: Perca flavescens ladderlectin-like (LO... 81.4 1e-11 XM_028564252.1 PREDICTED: Perca flavescens ladderlectin-like (LO... 81.4 1e-11 XM_028564251.1 PREDICTED: Perca flavescens ladderlectin-like (LO... 81.4 1e-11 XM_028564251.1 PREDICTED: Perca flavescens ladderlectin-like (LO... 81.4 1e-11 XM_030429847.1 PREDICTED: Sparus aurata galactose-specific lecti... 77.6 2e-10 XM_030429847.1 PREDICTED: Sparus aurata galactose-specific lecti... 77.6 2e-10 XM_030429846.1 PREDICTED: Sparus aurata galactose-specific lecti... 77.6 2e-10 XM_030429846.1 PREDICTED: Sparus aurata galactose-specific lecti... 77.6 2e-10 XM_030429845.1 PREDICTED: Sparus aurata galactose-specific lecti... 77.6 2e-10 XM_030429845.1 PREDICTED: Sparus aurata galactose-specific lecti... 77.6 2e-10 XM_030429850.1 PREDICTED: Sparus aurata type-2 ice-structuring p... 75.7 6e-10 XM_030429850.1 PREDICTED: Sparus aurata type-2 ice-structuring p... 75.7 6e-10 XM_030429849.1 PREDICTED: Sparus aurata type-2 ice-structuring p... 75.7 6e-10 XM_030429849.1 PREDICTED: Sparus aurata type-2 ice-structuring p... 75.7 6e-10 XM_026353427.1 PREDICTED: Anabas testudineus type-2 ice-structur... 75.7 6e-10 XM_026353427.1 PREDICTED: Anabas testudineus type-2 ice-structur... 75.7 6e-10 XM_018661989.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018661989.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018661988.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018661988.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018704802.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018704802.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018704801.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018704801.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018704800.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018704800.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018704799.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018704799.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018704798.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018704798.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018704797.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018704797.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018704286.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 75.7 6e-10 XM_018704286.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 75.7 6e-10 XM_018688310.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018688310.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018680341.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 75.7 6e-10 XM_018680341.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 75.7 6e-10 XM_026325393.1 PREDICTED: Mastacembelus armatus type-2 ice-struc... 73.7 2e-09 XM_026325393.1 PREDICTED: Mastacembelus armatus type-2 ice-struc... 73.7 2e-09 XM_026353426.1 PREDICTED: Anabas testudineus type-2 ice-structur... 69.9 3e-08 XM_026353426.1 PREDICTED: Anabas testudineus type-2 ice-structur... 69.9 3e-08 XM_026353425.1 PREDICTED: Anabas testudineus ladderlectin-like (... 69.9 3e-08 XM_026353425.1 PREDICTED: Anabas testudineus ladderlectin-like (... 69.9 3e-08 XM_026353424.1 PREDICTED: Anabas testudineus type-2 ice-structur... 69.9 3e-08 XM_026353424.1 PREDICTED: Anabas testudineus type-2 ice-structur... 69.9 3e-08 XM_018704269.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704269.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704268.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704268.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704267.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704267.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704266.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704266.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704265.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704265.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704264.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704264.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704263.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704263.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704261.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704261.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704260.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704260.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704259.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704259.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018680339.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018680339.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_030429842.1 PREDICTED: Sparus aurata type-2 ice-structuring p... 68.0 1e-07 XM_030429842.1 PREDICTED: Sparus aurata type-2 ice-structuring p... 68.0 1e-07 XM_030429841.1 PREDICTED: Sparus aurata type-2 ice-structuring p... 68.0 1e-07 XM_030429841.1 PREDICTED: Sparus aurata type-2 ice-structuring p... 68.0 1e-07 XM_023399361.1 PREDICTED: Seriola lalandi dorsalis ladderlectin-... 68.0 1e-07 XM_023399361.1 PREDICTED: Seriola lalandi dorsalis ladderlectin-... 68.0 1e-07 XM_023399325.1 PREDICTED: Seriola lalandi dorsalis type-2 ice-st... 68.0 1e-07 XM_023399325.1 PREDICTED: Seriola lalandi dorsalis type-2 ice-st... 68.0 1e-07 XM_022751372.1 PREDICTED: Seriola dumerili ladderlectin-like (LO... 68.0 1e-07 XM_022751372.1 PREDICTED: Seriola dumerili ladderlectin-like (LO... 68.0 1e-07 XM_022751371.1 PREDICTED: Seriola dumerili ladderlectin-like (LO... 68.0 1e-07 XM_022751371.1 PREDICTED: Seriola dumerili ladderlectin-like (LO... 68.0 1e-07 XM_022751368.1 PREDICTED: Seriola dumerili C-type lectin domain ... 68.0 1e-07 XM_022751368.1 PREDICTED: Seriola dumerili C-type lectin domain ... 68.0 1e-07 XM_018704796.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 68.0 1e-07 XM_018704796.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 68.0 1e-07 XM_018704795.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 68.0 1e-07 XM_018704795.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 68.0 1e-07 XM_018704793.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 68.0 1e-07 XM_018704793.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 68.0 1e-07 XM_018704792.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 68.0 1e-07 XM_018704792.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 68.0 1e-07 XM_018704791.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 68.0 1e-07 XM_018704791.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 68.0 1e-07 XM_023280840.1 PREDICTED: Amphiprion ocellaris secretory phospho... 64.1 2e-06 XM_023280840.1 PREDICTED: Amphiprion ocellaris secretory phospho... 64.1 2e-06 XM_018666723.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 64.1 2e-06 XM_018666723.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 64.1 2e-06 XM_018666722.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 64.1 2e-06 XM_018666722.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 64.1 2e-06 XM_030429851.1 PREDICTED: Sparus aurata ladderlectin-like (LOC11... 62.2 7e-06 XM_030429851.1 PREDICTED: Sparus aurata ladderlectin-like (LOC11... 62.2 7e-06 customdoc.py: -------- SRAAFP-nr.blastx.html customdoc.py: -------- SRAAFP-nt.tlbastn.html customdoc.py: -------- SRAAFP.RefSeqPro.blastp.html XM_028577118.1 PREDICTED: Perca flavescens type-2 ice-structurin... 94.9 1e-15 XM_028577118.1 PREDICTED: Perca flavescens type-2 ice-structurin... 94.9 1e-15 XM_028577120.1 PREDICTED: Perca flavescens type-2 ice-structurin... 89.1 6e-14 XM_028577120.1 PREDICTED: Perca flavescens type-2 ice-structurin... 89.1 6e-14 XM_028577119.1 PREDICTED: Perca flavescens type-2 ice-structurin... 89.1 6e-14 XM_028577119.1 PREDICTED: Perca flavescens type-2 ice-structurin... 89.1 6e-14 XM_028577117.1 PREDICTED: Perca flavescens type-2 ice-structurin... 89.1 6e-14 XM_028577117.1 PREDICTED: Perca flavescens type-2 ice-structurin... 89.1 6e-14 XM_028564253.1 PREDICTED: Perca flavescens type-2 ice-structurin... 85.3 8e-13 XM_028564253.1 PREDICTED: Perca flavescens type-2 ice-structurin... 85.3 8e-13 XM_028564599.1 PREDICTED: Perca flavescens galactose-specific le... 81.4 1e-11 XM_028564599.1 PREDICTED: Perca flavescens galactose-specific le... 81.4 1e-11 XM_028564252.1 PREDICTED: Perca flavescens ladderlectin-like (LO... 81.4 1e-11 XM_028564252.1 PREDICTED: Perca flavescens ladderlectin-like (LO... 81.4 1e-11 XM_028564251.1 PREDICTED: Perca flavescens ladderlectin-like (LO... 81.4 1e-11 XM_028564251.1 PREDICTED: Perca flavescens ladderlectin-like (LO... 81.4 1e-11 XM_030429847.1 PREDICTED: Sparus aurata galactose-specific lecti... 77.6 2e-10 XM_030429847.1 PREDICTED: Sparus aurata galactose-specific lecti... 77.6 2e-10 XM_030429846.1 PREDICTED: Sparus aurata galactose-specific lecti... 77.6 2e-10 XM_030429846.1 PREDICTED: Sparus aurata galactose-specific lecti... 77.6 2e-10 XM_030429845.1 PREDICTED: Sparus aurata galactose-specific lecti... 77.6 2e-10 XM_030429845.1 PREDICTED: Sparus aurata galactose-specific lecti... 77.6 2e-10 XM_030429850.1 PREDICTED: Sparus aurata type-2 ice-structuring p... 75.7 6e-10 XM_030429850.1 PREDICTED: Sparus aurata type-2 ice-structuring p... 75.7 6e-10 XM_030429849.1 PREDICTED: Sparus aurata type-2 ice-structuring p... 75.7 6e-10 XM_030429849.1 PREDICTED: Sparus aurata type-2 ice-structuring p... 75.7 6e-10 XM_026353427.1 PREDICTED: Anabas testudineus type-2 ice-structur... 75.7 6e-10 XM_026353427.1 PREDICTED: Anabas testudineus type-2 ice-structur... 75.7 6e-10 XM_018661989.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018661989.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018661988.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018661988.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018704802.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018704802.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018704801.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018704801.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018704800.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018704800.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018704799.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018704799.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018704798.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018704798.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018704797.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018704797.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018704286.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 75.7 6e-10 XM_018704286.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 75.7 6e-10 XM_018688310.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018688310.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 75.7 6e-10 XM_018680341.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 75.7 6e-10 XM_018680341.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 75.7 6e-10 XM_026325393.1 PREDICTED: Mastacembelus armatus type-2 ice-struc... 73.7 2e-09 XM_026325393.1 PREDICTED: Mastacembelus armatus type-2 ice-struc... 73.7 2e-09 XM_026353426.1 PREDICTED: Anabas testudineus type-2 ice-structur... 69.9 3e-08 XM_026353426.1 PREDICTED: Anabas testudineus type-2 ice-structur... 69.9 3e-08 XM_026353425.1 PREDICTED: Anabas testudineus ladderlectin-like (... 69.9 3e-08 XM_026353425.1 PREDICTED: Anabas testudineus ladderlectin-like (... 69.9 3e-08 XM_026353424.1 PREDICTED: Anabas testudineus type-2 ice-structur... 69.9 3e-08 XM_026353424.1 PREDICTED: Anabas testudineus type-2 ice-structur... 69.9 3e-08 XM_018704269.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704269.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704268.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704268.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704267.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704267.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704266.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704266.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704265.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704265.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704264.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704264.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704263.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704263.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704261.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704261.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704260.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704260.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704259.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018704259.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018680339.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_018680339.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 69.9 3e-08 XM_030429842.1 PREDICTED: Sparus aurata type-2 ice-structuring p... 68.0 1e-07 XM_030429842.1 PREDICTED: Sparus aurata type-2 ice-structuring p... 68.0 1e-07 XM_030429841.1 PREDICTED: Sparus aurata type-2 ice-structuring p... 68.0 1e-07 XM_030429841.1 PREDICTED: Sparus aurata type-2 ice-structuring p... 68.0 1e-07 XM_023399361.1 PREDICTED: Seriola lalandi dorsalis ladderlectin-... 68.0 1e-07 XM_023399361.1 PREDICTED: Seriola lalandi dorsalis ladderlectin-... 68.0 1e-07 XM_023399325.1 PREDICTED: Seriola lalandi dorsalis type-2 ice-st... 68.0 1e-07 XM_023399325.1 PREDICTED: Seriola lalandi dorsalis type-2 ice-st... 68.0 1e-07 XM_022751372.1 PREDICTED: Seriola dumerili ladderlectin-like (LO... 68.0 1e-07 XM_022751372.1 PREDICTED: Seriola dumerili ladderlectin-like (LO... 68.0 1e-07 XM_022751371.1 PREDICTED: Seriola dumerili ladderlectin-like (LO... 68.0 1e-07 XM_022751371.1 PREDICTED: Seriola dumerili ladderlectin-like (LO... 68.0 1e-07 XM_022751368.1 PREDICTED: Seriola dumerili C-type lectin domain ... 68.0 1e-07 XM_022751368.1 PREDICTED: Seriola dumerili C-type lectin domain ... 68.0 1e-07 XM_018704796.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 68.0 1e-07 XM_018704796.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 68.0 1e-07 XM_018704795.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 68.0 1e-07 XM_018704795.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 68.0 1e-07 XM_018704793.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 68.0 1e-07 XM_018704793.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 68.0 1e-07 XM_018704792.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 68.0 1e-07 XM_018704792.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 68.0 1e-07 XM_018704791.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 68.0 1e-07 XM_018704791.1 PREDICTED: Lates calcarifer ladderlectin-like (LO... 68.0 1e-07 XM_023280840.1 PREDICTED: Amphiprion ocellaris secretory phospho... 64.1 2e-06 XM_023280840.1 PREDICTED: Amphiprion ocellaris secretory phospho... 64.1 2e-06 XM_018666723.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 64.1 2e-06 XM_018666723.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 64.1 2e-06 XM_018666722.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 64.1 2e-06 XM_018666722.1 PREDICTED: Lates calcarifer type-2 ice-structurin... 64.1 2e-06 XM_030429851.1 PREDICTED: Sparus aurata ladderlectin-like (LOC11... 62.2 7e-06 XM_030429851.1 PREDICTED: Sparus aurata ladderlectin-like (LOC11... 62.2 7e-06 customdoc.py: -------- SRAAFP.blastp.swissprot.html customdoc.py: -------- SRAAFP-CDS1.tblastn.nt.html customdoc.py: -------- SRAAFP-CDS1.tblastx.nt.html customdoc.py: -------- SRAARFP-CDS1.blastx.report.html customdoc.py: -------- blastdb.html customdoc.py: -------- SRAAFP-CDS1.blastn.html customdoc.py: -------- SRAAFP-nt.tblastn.html blncbi customdoc.py: -------- blncbi.html href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/formats.html">1-letter href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/formats.html">1-letter href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/blncbi/bluescript.pdf">bluescript.pdfbluescript.pdf>>SRAAFP:CDS1, 588 nt vs @/home/psgendb/dat/fasta/refseq_protein.nam library >>>SRAAFP:CDS1, 588 nt vs @/home/psgendb/dat/fasta/refseq_protein.nam library customdoc.py: -------- SRAAFP.RefSeqRNA.fasta.html @/home/psgendb/dat/fasta/refseq_rna.nam 6 @/home/psgendb/dat/fasta/refseq_rna.nam 6 Library: @/home/psgendb/dat/fasta/refseq_rna.nam Library: @/home/psgendb/dat/fasta/refseq_rna.nam @/home/psgendb/dat/fasta/refseq_rna.nam library @/home/psgendb/dat/fasta/refseq_rna.nam library customdoc.py: -------- SRAAFP.nt.tfastx.html # tfastx3 -T 32 -Q -p -b %NUMOFSCORES% -d 20 -m 0 -z 1 -E 1.0e-5 -m "F8C bio8144906429648998462.tmp.tsv" -m "F6 bio8144906429648998462.tmp.html" bio8144906429648998462.tmp @/home/psgendb/dat/fasta/nt.nam 3 # tfastx3 -T 32 -Q -p -b %NUMOFSCORES% -d 20 -m 0 -z 1 -E 1.0e-5 -m "F8C bio8144906429648998462.tmp.tsv" -m "F6 bio8144906429648998462.tmp.html" bio8144906429648998462.tmp @/home/psgendb/dat/fasta/nt.nam 3 Library: @/home/psgendb/dat/fasta/nt.nam Library: @/home/psgendb/dat/fasta/nt.nam >>>SRAAFP:CDS1, 196 aa vs @/home/psgendb/dat/fasta/nt.nam library >>>SRAAFP:CDS1, 196 aa vs @/home/psgendb/dat/fasta/nt.nam library customdoc.py: -------- database.sim.html dataset customdoc.py: -------- AB089942.tblastn.html customdoc.py: -------- AY313169.tblastn.html customdoc.py: -------- DQ288897.tblastn.html customdoc.py: -------- dataset.html 


    {mars:/home/psgendb/tutorials/bioLegato/dataset}wc -l *.acc
      500 AB089942.tblastn.acc
      401 all.acc
      102 AY313169.tblastn.acc
       85 DQ288897.tblastn.acc
      409 tblastn.acc
      123 temp.acc
     1620 total


    {mars:/home/psgendb/tutorials/bioLegato/dataset}wc -l *.acc
      500 AB089942.tblastn.acc
      401 all.acc
      102 AY313169.tblastn.acc
       85 DQ288897.tblastn.acc
      409 tblastn.acc
      123 temp.acc
     1620 total

    discrete customdoc.py: -------- discrete.html href="file:///home/psgendb/doc/Phylip/restml.html">$doc/Phylip/restml.html   href="file:///home/psgendb/doc/Phylip/restml.html">$doc/Phylip/restml.html   RESTDIST.23676 dotmatrix customdoc.py: -------- dotmatrix.html genome_assembly customdoc.py: -------- genome.html Assembly customdoc.py: -------- Assembly.html Correction customdoc.py: -------- old_gunzip.html customdoc.py: -------- DNAread_correction.html Preprocessing customdoc.py: -------- DNAreadProcessing.html     -rw-rw-r-- 1 psgendb psgendb 24493198 Dec 31 14:12 -rw-rw-r-- 1 psgendb psgendb 27005117 Dec 31 14:12 -rw-rw-r-- 1 psgendb psgendb 20560594 Dec 31 14:12 -rw-rw-r-- 1 psgendb psgendb 22777206 Dec 31 14:12 -rw-rw-r-- 1 psgendb psgendb 15246265 Dec 31 14:13 -rw-rw-r-- 1 psgendb psgendb 17306339 Dec 31 14:13 getgenome customdoc.py: -------- Last.html href="http://home.cc.umanitoba.ca/~psgendb/birchdoc/package/LAST.html">Last -rw-rw-r--. 1 psgendb psgendb  -rw-rw-r--. 1 psgendb psgendb      176 Nov 13 13:44 Scer.des
    -rw-rw-r--. 1 psgendb psgendb      509 Nov 13 13:44 Scer.prj
    -rw-rw-r--. 1 psgendb psgendb      136 Nov 13 13:44 Scer.sds
    -rw-rw-r--. 1 psgendb psgendb      136 Nov 13 13:44 Scer.ssp
    -rw-rw-r--. 1 psgendb psgendb 34842136 Nov 13 13:44 -rw-rw-r--. 1 psgendb psgendb 12071343 Nov 13 13:44 customdoc.py: -------- Mauve.html href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/getgenome/Last.html">Comparing href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/getgenome/Last.html">Comparing href="http://home.cc.umanitoba.ca/~psgendb/local/public_html/computenodes/ComputeNodes.html">Using customdoc.py: -------- getgenome.html

    -rw-r-----. 1 psgendb psgendb 3825906 Nov  9 19:09

    -rw-r-----. 1 psgendb psgendb 3825906 drwxrwxr-x. 3 psgendb psgendb    4096 -rw-------. 1 psgendb psgendb    1596 {mercury:/home/psgendb/test/PLNT3140/getgenome/temp}cd {mercury:/home/psgendb/test/PLNT3140/getgenome/temp/ncbi_dataset}ls drwxrwxr-x. 3 psgendb psgendb 4096 Nov 10 09:03 data
    {mercury:/home/psgendb/test/PLNT3140/getgenome/temp/ncbi_dataset}cd {mercury:/home/psgendb/test/PLNT3140/getgenome/temp/ncbi_dataset/data}ls -rw-------. 1 psgendb psgendb 1666 Nov 10  2023 -rw-------. 1 psgendb psgendb  416 Nov 10  2023 -rw-------. 1 psgendb psgendb  353 Nov 10  2023 drwxrwxr-x. 2 psgendb psgendb 4096 Nov 10 09:03 {mercury:/home/psgendb/test/PLNT3140/getgenome/temp/ncbi_dataset/data}cd {mercury:/home/psgendb/test/PLNT3140/getgenome/temp/ncbi_dataset/data/GCA_000146045.2}ls -rw-------. 1 psgendb psgendb 12223592 Nov 10  2023 -rw-------. 1 psgendb psgendb 12223592 Nov drwxrwxr-x. 3 psgendb psgendb     multalign customdoc.py: -------- multalign.html href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/doc/cd-hit/cdhit-user-guide.pdf"> href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/doc/cd-hit/cdhit-user-guide.pdf"> href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/doc/clustal/README.txt"> href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/doc/clustal/README.txt"> overview customdoc.py: -------- bioLegato.interfaces.html customdoc.py: -------- bioLegato.html customdoc.py: -------- bioLegato.pipelining.html customdoc.py: -------- bioLegato.layers.html href="http://home.cc.umanitoba.ca/~psgendb/local/public_html/biolegato/index.html">BioLegato customdoc.py: -------- overview.html blast.workflow customdoc.py: -------- blast.workflow.html marker.workflow customdoc.py: -------- marker.workflow.html pairwise.sim customdoc.py: -------- pairwise.sim.html href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/index.html">chitIII.CDS.pal2nal.fsn href="file:///home/psgendb/tutorials/bioLegato/phylogeny/distance/chitIII.CDS.pal2nal.fsn">chitIII.CDS.pal2nal.fsn href="file:///home/psgendb/tutorials/bioLegato/phylogeny/distance/chitIII.pro.mafft.gblocks.fsa">chitIII.pro.maaft.gblocks.fsa href="file:///home/psgendb/tutorials/bioLegato/phylogeny/distance/chitIII.pro.mafft.gblocks.fsa">chitIII.pro.maaft.gblocks.fsa DRAWGRAM.5665 DRAWTREE.8332 DRAWGRAM.5857 DRAWGRAM.6088 DRAWTREE.8500 DRAWGRAM.8644 trees customdoc.py: -------- trees.html customdoc.py: -------- TaxonomicGroups.html defensin character customdoc.py: -------- character.html href="file:///home/psgendb/tutorials/bioLegato/phylogeny/character/chitIII.CDS.pal2nal.gblocks.fsn">chitIII.CDS.pal2nal.gblocks.fsn. href="file:///home/psgendb/tutorials/bioLegato/phylogeny/character/chitIII.CDS.pal2nal.gblocks.fsn">chitIII.CDS.pal2nal.gblocks.fsn. sequence customdoc.py: -------- algorithms.html customdoc.py: -------- numseq1.html customdoc.py: -------- seq_biolegato.html ($birch)  is /home/psgendb in this example
    {brassica:/home/psgendb/tutorials/bioLegato/sequence}cp {brassica:/home/plants/psgendb/tutorials/bioLegato/sequence}cd customdoc.py: -------- seq_cloning.html href="file:///home/psgendb/public_html/tutorials/bioLegato/sequence/pBSGUS.fsa">pBSGUS.fsa'.
    href="file:///home/psgendb/public_html/tutorials/bioLegato/sequence/pBSGUS.fsa">pBSGUS.fsa'.
    customdoc.py: -------- seq_command.html ($birch)  is /home/psgendb in this example
    {brassica:/home/psgendb/tutorials/bioLegato/sequence}cp {brassica:/home/plants/psgendb/tutorials/bioLegato/sequence}cd customdoc.py: -------- seq_sequin.html customdoc.py: -------- sequence.html location of birch ($birch)  is /home/psgendb in this {brassica:/home/psgendb/tutorials/bioLegato/sequence}cp {brassica:/home/plants/psgendb/tutorials/bioLegato/sequence}cd transcriptome customdoc.py: -------- transcriptome.html Assembly customdoc.py: -------- RNAAssembly.html Correction customdoc.py: -------- RNAread_correction.html DifferentialExpression customdoc.py: -------- DifferentialExpression.html -rw-rw-r-- 1 psgendb psgendb 21449787 May 12 12:13 -rw-rw-r-- 1 psgendb psgendb 10848709 May 12 12:13 -rw-rw-r-- 1 psgendb psgendb  654227590 -rw-rw-r-- 1 psgendb psgendb  657474671 -rw-rw-r-- 1 psgendb psgendb  631270036 -rw-rw-r-- 1 psgendb psgendb  630134395 -rw-rw-r-- 1 psgendb psgendb  645589447 -rw-rw-r-- 1 psgendb psgendb  647000420 -rw-rw-r-- 1 psgendb psgendb  632249759 -rw-rw-r-- 1 psgendb psgendb  631184299 -rw-rw-r-- 1 psgendb psgendb  799667084 -rw-rw-r-- 1 psgendb psgendb  798155913 -rw-rw-r-- 1 psgendb psgendb 1035312919 Mar 21 -rw-rw-r-- 1 psgendb psgendb 1033130655 Mar 21 Preprocessing customdoc.py: -------- RNAreadProcessing.html -rw-rw-r-- 1 psgendb psgendb 168088629 Feb 26 07:57 -rw-rw-r-- 1 psgendb psgendb 177271488 Feb 26 07:57 -rw-rw-r-- 1 psgendb psgendb 194961311 Feb 26 07:57 -rw-rw-r-- 1 psgendb psgendb 204240390 Feb 26 07:57 -rw-rw-r-- 1 psgendb psgendb 251977279 Feb 26 07:57 -rw-rw-r-- 1 psgendb psgendb 270292798 Feb 26 07:57 -rw-rw-r-- 1 psgendb psgendb 182257703 Feb 26 07:58 -rw-rw-r-- 1 psgendb psgendb 180472929 Feb 26 07:58 -rw-rw-r-- 1 psgendb psgendb 156844236 Feb 26 07:58 -rw-rw-r-- 1 psgendb psgendb 167542797 Feb 26 07:58 -rw-rw-r-- 1 psgendb psgendb 153937166 Feb 26 07:58 -rw-rw-r-- 1 psgendb psgendb 161674265 Feb 26 07:58 lrwxrwxrwx 1 psgendb psgendb        39 Feb lrwxrwxrwx 1 psgendb psgendb        39 Feb lrwxrwxrwx 1 psgendb psgendb        39 Feb lrwxrwxrwx 1 psgendb psgendb        39 Feb lrwxrwxrwx 1 psgendb psgendb        43 Feb lrwxrwxrwx 1 psgendb psgendb        43 Feb lrwxrwxrwx 1 psgendb psgendb        39 Feb lrwxrwxrwx 1 psgendb psgendb        39 Feb lrwxrwxrwx 1 psgendb psgendb        40 Feb lrwxrwxrwx 1 psgendb psgendb        40 Feb lrwxrwxrwx 1 psgendb psgendb        40 Feb lrwxrwxrwx 1 psgendb psgendb        40 Feb -rw-rw-r-- 1 psgendb psgendb        20 Feb -rw-rw-r-- 1 psgendb psgendb 168088629 Feb 26 11:54 -rw-rw-r-- 1 psgendb psgendb 177271488 Feb 26 11:54 -rw-rw-r-- 1 psgendb psgendb 194961311 Feb 26 07:57 -rw-rw-r-- 1 psgendb psgendb 204240390 Feb 26 07:57 -rw-rw-r-- 1 psgendb psgendb 251977279 Feb 26 07:57 -rw-rw-r-- 1 psgendb psgendb 270292798 Feb 26 07:57 -rw-rw-r-- 1 psgendb psgendb 182257703 Feb 26 11:54 -rw-rw-r-- 1 psgendb psgendb 180472929 Feb 26 11:54 -rw-rw-r-- 1 psgendb psgendb 156844236 Feb 26 11:54 -rw-rw-r-- 1 psgendb psgendb 167542797 Feb 26 11:54 -rw-rw-r-- 1 psgendb psgendb 153937166 Feb 26 07:58 -rw-rw-r-- 1 psgendb psgendb 161674265 Feb 26 07:58 href="file:///home/psgendb/doc/seqkit.help">SeqKit. href="file:///home/psgendb/doc/seqkit.help">SeqKit. UserSettings customdoc.py: -------- UserSettings.html alt="{neptune:/home/psgendb}" width="524" height="161">
    href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/newinstall.html">getbirch).
    regarding this page to psgendb@cc.umanitoba.ca
    regarding this page to psgendb@cc.umanitoba.ca
    bldemo script dat bltable PCD Documentation Edit File sample_data seqcolors blfiles PCD Documentation Edit File seqcolors test java bioLegato admin BLHelper local admin pipeline customdoc.py: -------- blastpipeline.html customdoc.py: -------- QHD43416.blastp.html blmenus customdoc.py: -------- blmenus.html href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchadmin/addprog/binaries.html#GDE">BIRCH href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchadmin/addprog/binaries.html#GDE">BIRCH href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchadmin/addprog/binaries.html#GDE"> href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/birchadmin/addprog/binaries.html#GDE"> href="https://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/biolegato/biolegato.tar.gz">https://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/biolegato/biolegato.tar.gz. drwxrwxr-x 4 psgendb psgendb     4096 Nov 28  2021 -rw-rw-r-- 1 psgendb psgendb 35983360 Jul  5 13:03 lrwxrwxrwx  1 psgendb psgendb   21 Jul lrwxrwxrwx  1 psgendb psgendb   22 Jul lrwxrwxrwx  1 psgendb psgendb   18 Jul -rw-rw-r--  1 psgendb psgendb 9691 Jul 14  2018 lrwxrwxrwx  1 psgendb psgendb    9 lrwxrwxrwx  1 psgendb psgendb   19 Jul lrwxrwxrwx  1 psgendb psgendb   17 Jul lrwxrwxrwx  1 psgendb psgendb   24 Jul lrwxrwxrwx  1 psgendb psgendb   21 Jul -rw-rw-r--  1 psgendb psgendb 1802 Jun  4 16:53 -rw-rw-r--  1 psgendb psgendb 1304 Mar 20  2015 lrwxrwxrwx  1 psgendb psgendb   14 Jul lrwxrwxrwx  1 psgendb psgendb   20 Jul drwxrwxr-x 12 psgendb psgendb 4096 Jun 11 14:45 src
    lrwxrwxrwx  1 psgendb psgendb   17 Jul drwxrwxr-x 10 psgendb psgendb 4096 Jul  5 12:42 test
    drwxrwxr-x 2 psgendb psgendb 4096 Jul  1 drwxrwxr-x 2 psgendb psgendb 4096 Jul  1 13:05 drwxrwxr-x 2 psgendb psgendb 4096 Jul  1 13:05 lrwxrwxrwx 1 psgendb psgendb   14 Jul  1 lrwxrwxrwx 1 psgendb psgendb   14 Jul  5 drwxrwxr-x 4 psgendb psgendb 4096 Jul  1 13:08 dat
    drwxrwxr-x 2 psgendb psgendb 4096 Jul  5 12:37 doc
    drwxrwxr-x 3 psgendb psgendb 4096 Jul  1 12:08 java
    drwxrwxr-x 4 psgendb psgendb 4096 Jul  4 15:49 local
    -rw-rw-r-- 1 psgendb psgendb  477 Jul  5 12:42 drwxrwxr-x 2 psgendb psgendb 4096 Jul  5 12:31 href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/UserSettings/UserSettings.html">In href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/UserSettings/UserSettings.html">In BIRCH=/home/psgendb/java/bioLegato/test
    BIRCH=/home/psgendb/java/bioLegato/test
    href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/bioLegato.html">BioLegato href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/bioLegato.html">BioLegato href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/pipeline/blastpipeline.html">Data href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/pipeline/blastpipeline.html">Data -rw-r--r-- 1 psgendb psgendb 6037 Jun  drwxrwxr-x 4 psgendb psgendb 4096 Jul  1 11:54 drwxrwxr-x 5 psgendb psgendb 4096 Jul  5 12:12 -rw-rw-r-- 1 psgendb psgendb   46 Jul  1 -rw-rw-r-- 1 psgendb psgendb  154 Jul  drwxrwxr-x 5 psgendb psgendb 4096 Jul  1 11:54 PCD
    drwxrwxr-x 2 psgendb psgendb 4096 Jul  1 11:54 drwxrwxr-x 2 psgendb psgendb 4096 Jul  4 drwxrwxr-x 2 psgendb psgendb 4096 Jul  1 11:54 Edit
    drwxrwxr-x 2 psgendb psgendb 4096 Jul  4 17:05 File
    -rw-rw-r-- 1 psgendb psgendb   29 Jun 30 17:47 -rw-r--r-- 1 psgendb psgendb 1017 Jun 30 19:42 -rw-r--r-- 1 psgendb psgendb  895 Jul  4 17:14 -rw-r--r-- 1 psgendb psgendb  803 Jun 30 19:42 -rw-r--r-- 1 psgendb psgendb  493 Jun 30 19:43 -rw-r--r-- 1 psgendb psgendb  410 Jun 30 19:43 -rw-r--r-- 1 psgendb psgendb  863 Jul  1 10:33 -rw-r--r-- 1 psgendb psgendb  936 Jun 30 19:43 -rw-r--r-- 1 psgendb psgendb  500 Jun 30 19:45 -rw-r--r-- 1 psgendb psgendb  405 Jul  1 10:34 -rw-r--r-- 1 psgendb psgendb  226 Jun 30 17:48 -rw-r--r-- 1 psgendb psgendb  376 Jun 30 19:45 -rw-r--r-- 1 psgendb psgendb 1326 Jun 30 19:46 -rw-r--r-- 1 psgendb psgendb  900 Jun 30 19:46 -rw-r--r-- 1 psgendb psgendb 1025 Jun 30 19:46 -rw-r--r-- 1 psgendb psgendb  345 Jun 30 19:46 -rw-r--r-- 1 psgendb psgendb  936 Jun 30 href="http://home.cc.umanitoba.ca/~psgendb/">BIRCH system that genome_assembly.old customdoc.py: -------- genome.html Assembly customdoc.py: -------- Assembly.html Correction customdoc.py: -------- DNAread_correction.html Preprocessing customdoc.py: -------- DNAreadProcessing.html -rw-rw-r-- 1 psgendb psgendb 24493198 Dec 31 14:12 -rw-rw-r-- 1 psgendb psgendb 27005117 Dec 31 14:12 -rw-rw-r-- 1 psgendb psgendb 20560594 Dec 31 14:12 -rw-rw-r-- 1 psgendb psgendb 22777206 Dec 31 14:12 -rw-rw-r-- 1 psgendb psgendb 15246265 Dec 31 14:13 -rw-rw-r-- 1 psgendb psgendb 17306339 Dec 31 14:13 scripting customdoc.py: -------- scripting.html utilities customdoc.py: -------- browser.csh.html http://home.cc.umanitoba.ca~psgendb) you will get a message saying that

    mozilla /home/psgendb/doc/Phylip/main.html

    mozilla /home/psgendb/doc/Phylip/main.html
    customdoc.py: -------- btail.html customdoc.py: -------- delgi.html customdoc.py: -------- ruler.html customdoc.py: -------- uniqid.html About customdoc.py: -------- AboutBIRCH.html backgrounds /home/psgendb/local/public_html customdoc.py: -------- BIRCH2.8.5announcement.html href="http://home.cc.umanitoba.ca/~psgendb/tutorials/bioLegato/overview/overview.html">BIOLEGATO src="http://home.cc.umanitoba.ca/~psgendb/BMC.OA.gif" border="0"> src="http://home.cc.umanitoba.ca/~psgendb/highlyaccessed-large.gif" http://home.cc.umanitoba.ca/~psgendb
    src="http://home.cc.umanitoba.ca/~psgendb/highlyaccessed-large.gif" http://home.cc.umanitoba.ca/~psgendb
    BIOLEGATO src="http://home.cc.umanitoba.ca/~psgendb/BMC.OA.gif" border="0"> src="http://home.cc.umanitoba.ca/~psgendb/highlyaccessed-large.gif" http://home.cc.umanitoba.ca/~psgendb
    http://home.cc.umanitoba.ca/~psgendb
    customdoc.py: -------- BIRCH2.96announcement.html href="http://home.cc.umanitoba.ca/~psgendb/">BIRCH src="http://home.cc.umanitoba.ca/~psgendb/BMC.OA.gif" name="graphics1" src="http://home.cc.umanitoba.ca/~psgendb/highlyaccessed-large.gif" href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/main.html">blnalign href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blpalign">blpalign customdoc.py: -------- BIRCH2.9announcement.html src="http://home.cc.umanitoba.ca/~psgendb/BMC.OA.gif" border="0"> src="http://home.cc.umanitoba.ca/~psgendb/highlyaccessed-large.gif" http://home.cc.umanitoba.ca/~psgendb href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/main.html">http://home.cc.umanitoba.ca/~psgendb/othersites.html
    BIRCH href="http://home.cc.umanitoba.ca/~psgendb/tutorials/bioLegato/overview/bioLegato.interfaces.html#blncbi">blncbi, href="http://home.cc.umanitoba.ca/~psgendb/tutorials/bioLegato/overview/bioLegato.interfaces.html#blnfetch">blnfetch, href="http://home.cc.umanitoba.ca/~psgendb/tutorials/bioLegato/overview/bioLegato.interfaces.html#blpfetch">blpfetch href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/doc/weblogo/manual.html">WebLogo src="http://home.cc.umanitoba.ca/~psgendb/BMC.OA.gif" name="graphics1" src="http://home.cc.umanitoba.ca/~psgendb/highlyaccessed-large.gif" href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/main.html">blnalign href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blpalign">blpalign customdoc.py: -------- BIRCH3.10announcement.html href="http://home.cc.umanitoba.ca/~psgendb/">BIRCH src="http://home.cc.umanitoba.ca/~psgendb/BMC.OA.gif" name="graphics1" src="http://home.cc.umanitoba.ca/~psgendb/highlyaccessed-large.gif" href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/main.html">Artemis href="http://home.cc.umanitoba.ca/~psgendb/local-generic/public_html/setup.mac/setup.html">First href="http://home.cc.umanitoba.ca/~psgendb/birchadmin/Settings.html">settings href="http://home.cc.umanitoba.ca/~psgendb/birchadmin/HelperApps.html">Helper href="http://home.cc.umanitoba.ca/~psgendb/birchdoc/program/chooseviewer.py.html">chooseviewer.py href="http://home.cc.umanitoba.ca/~psgendb/birchadmin/birchadmin.html">documentation href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/requirements.html#OPTIONAL">numpy href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/requirements.html#OPTIONAL">here.
    href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blnalign">blnalign href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blpalign">blpalign customdoc.py: -------- BIRCH3.15announcement.html href="http://home.cc.umanitoba.ca/~psgendb/">BIRCH src="http://home.cc.umanitoba.ca/~psgendb/BMC.OA.gif" name="graphics1" src="http://home.cc.umanitoba.ca/~psgendb/highlyaccessed-large.gif" href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/main.html">numpy href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/requirements.html#OPTIONAL">here.
    href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blnalign">blnalign href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blpalign">blpalign customdoc.py: -------- BIRCH3.20announcement.html href="http://home.cc.umanitoba.ca/~psgendb/">BIRCH src="http://home.cc.umanitoba.ca/~psgendb/BMC.OA.gif" name="graphics1" src="http://home.cc.umanitoba.ca/~psgendb/highlyaccessed-large.gif" href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/main.html"> blastdbkit href="http://home.cc.umanitoba.ca/~psgendb/local/public_html/News/BIRCHNews.html">BIRCH href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/requirements.html#OPTIONAL">numpy href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/requirements.html#OPTIONAL">here.
    href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blnalign">blnalign href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blpalign">blpalign customdoc.py: -------- BIRCH3.30announcement.html href="http://home.cc.umanitoba.ca/~psgendb/">BIRCH src="http://home.cc.umanitoba.ca/~psgendb/BMC.OA.gif" name="graphics1" src="http://home.cc.umanitoba.ca/~psgendb/highlyaccessed-large.gif" href="http://home.cc.umanitoba.ca/~psgendb/doc/BIRCH/utilities/delgi.html">framework of href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/main.html">delgi.py - href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/doc/BIRCH/birchadmin/inst.Web/inst.Web.html">set

  • blastdbkit href="http://home.cc.umanitoba.ca/~psgendb/local/public_html/News/BIRCHNews.html">BIRCH
  • Artemis - href="http://home.cc.umanitoba.ca/~psgendb/doc/BIRCH/birchadmin/Settings.html">settings and Helper Applications. href="http://home.cc.umanitoba.ca/~psgendb/doc/BIRCH/birchdoc/program/chooseviewer.py.html">chooseviewer.py href="http://home.cc.umanitoba.ca/~psgendb/doc/BIRCH/birchadmin/birchadmin.html">documentation for href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/requirements.html#OPTIONAL">numpy href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/requirements.html#OPTIONAL">here.
    href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blnalign">blnalign href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blpalign">blpalign customdoc.py: -------- BIRCH3.40announcement.html href="http://home.cc.umanitoba.ca/~psgendb/">BIRCH src="http://home.cc.umanitoba.ca/~psgendb/BMC.OA.gif" name="graphics1" src="http://home.cc.umanitoba.ca/~psgendb/highlyaccessed-large.gif" href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/main.html"> href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/getgenome/Mauve.html">Comparing href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/getgenome/Last.html">Comparing href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/blncbi/blncbi.html">Finding href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/NCBI/PrimerBlast/PrimerBlast.html">in-silico
  • delgi.py - href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/doc/BIRCH/birchadmin/inst.Web/inst.Web.html">set href="http://home.cc.umanitoba.ca/~psgendb/local/public_html/News/BIRCHNews.html">BIRCH href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/requirements.html#OPTIONAL">numpy href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/requirements.html#OPTIONAL">here.
    href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blnalign">blnalign href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blpalign">blpalign customdoc.py: -------- BIRCH3.50announcement.html href="http://home.cc.umanitoba.ca/~psgendb/">BIRCH src="http://home.cc.umanitoba.ca/~psgendb/BMC.OA.gif" name="graphics1" src="http://home.cc.umanitoba.ca/~psgendb/highlyaccessed-large.gif" href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/main.html">Finding href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/getgenome/Mauve.html">Comparing href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/getgenome/Last.html">Comparing href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/blncbi/blncbi.html">Finding href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/NCBI/PrimerBlast/PrimerBlast.html">in-silico href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/doc/BIRCH/birchadmin/inst.Web/inst.Web.html">set href="http://home.cc.umanitoba.ca/~psgendb/local/public_html/News/BIRCHNews.html">BIRCH href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/requirements.html#OPTIONAL">numpy href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/requirements.html#OPTIONAL">here.
    href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blnalign">blnalign href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blpalign">blpalign customdoc.py: -------- BIRCH3.60announcement.html href="http://home.cc.umanitoba.ca/~psgendb/">BIRCH src="http://home.cc.umanitoba.ca/~psgendb/BMC.OA.gif" name="graphics1" src="http://home.cc.umanitoba.ca/~psgendb/highlyaccessed-large.gif" href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/main.html">Finding href="http%5C://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/getgenome/Mauve.html">Comparing href="http%5C://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/getgenome/Last.html">Comparing href="http%5C://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/blncbi/blncbi.html">Finding href="http%5C://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/NCBI/PrimerBlast/PrimerBlast.html">in-silico href="http%5C://home.cc.umanitoba.ca/~psgendb/birchhomedir/doc/BIRCH/birchadmin/inst.Web/inst.Web.html">set href="http://home.cc.umanitoba.ca/~psgendb/local/public_html/News/BIRCHNews.html">BIRCH href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/requirements.html#OPTIONAL">numpy href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/requirements.html#OPTIONAL">here.
    href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blnalign">blnalign href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blpalign">blpalign customdoc.py: -------- localacknowledgement.html customdoc.py: -------- localadvert.html customdoc.py: -------- localapps.html customdoc.py: -------- localdb.html customdoc.py: -------- localdesktop.html Connecting First time setup, Connecting First time setup, BIRCH src="http://home.cc.umanitoba.ca/~psgendb/BMC.OA.gif" name="graphics1" src="http://home.cc.umanitoba.ca/~psgendb/highlyaccessed-large.gif" href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/main.html">Finding href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/getgenome/Mauve.html">Comparing href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/getgenome/Last.html">Comparing href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/blncbi/blncbi.html">Finding href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/NCBI/PrimerBlast/PrimerBlast.html">in-silico href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/doc/BIRCH/birchadmin/inst.Web/inst.Web.html">set href="http://home.cc.umanitoba.ca/~psgendb/local/public_html/News/BIRCHNews.html">BIRCH href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/requirements.html#OPTIONAL">numpy href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/requirements.html#OPTIONAL">here.
    href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blnalign">blnalign href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blpalign">blpalign customdoc.py: -------- BIRCH3.71announcement.html href="http://home.cc.umanitoba.ca/~psgendb/">BIRCH src="http://home.cc.umanitoba.ca/~psgendb/BMC.OA.gif" name="graphics1" src="http://home.cc.umanitoba.ca/~psgendb/highlyaccessed-large.gif" href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/main.html">Finding href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/getgenome/Mauve.html">Comparing href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/getgenome/Last.html">Comparing href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/blncbi/blncbi.html">Finding href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/NCBI/PrimerBlast/PrimerBlast.html">in-silico href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/doc/BIRCH/birchadmin/inst.Web/inst.Web.html">set href="http://home.cc.umanitoba.ca/~psgendb/local/public_html/News/BIRCHNews.html">BIRCH href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/requirements.html#OPTIONAL">numpy href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/requirements.html#OPTIONAL">here.
    href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blnalign">blnalign href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blpalign">blpalign customdoc.py: -------- connecting.html customdoc.py: -------- BIRCH3.90announcement.html href="http://home.cc.umanitoba.ca/~psgendb/">BIRCH href="http://home.cc.umanitoba.ca/~psgendb/">BIRCH src="http://home.cc.umanitoba.ca/~psgendb/BMC.OA.gif" name="graphics1" src="http://home.cc.umanitoba.ca/~psgendb/BMC.OA.gif" name="graphics1" src="http://home.cc.umanitoba.ca/~psgendb/highlyaccessed-large.gif" src="http://home.cc.umanitoba.ca/~psgendb/highlyaccessed-large.gif" href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/main.html">Finding href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/getgenome/getgenome.html">Finding href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/getgenome/getgenome.html">Finding href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/BIRCHDEV/public_html/tutorials/bioLegato/getgenome/Mauve.html">Comparing href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/getgenome/Mauve.html">Comparing href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/getgenome/Mauve.html">Comparing href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/BIRCHDEV/public_html/tutorials/bioLegato/getgenome/Last.html">Comparing href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/getgenome/Last.html">Comparing href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/getgenome/Last.html">Comparing href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/BIRCHDEV/public_html/tutorials/bioLegato/blncbi/blncbi.html">Finding href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/blncbi/blncbi.html">Finding href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/blncbi/blncbi.html">Finding href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/BIRCHDEV/public_html/tutorials/NCBI/PrimerBlast/PrimerBlast.html">in-silico href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/NCBI/PrimerBlast/PrimerBlast.html">in-silico href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/NCBI/PrimerBlast/PrimerBlast.html">in-silico href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/BIRCHDEV/public_html/doc/BIRCH/birchadmin/inst.Web/inst.Web.html">set href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/doc/BIRCH/birchadmin/inst.Web/inst.Web.html">set href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/doc/BIRCH/birchadmin/inst.Web/inst.Web.html">set href="http://home.cc.umanitoba.ca/~psgendb/local/public_html/News/BIRCHNews.html">BIRCH href="http://home.cc.umanitoba.ca/~psgendb/local/public_html/News/BIRCHNews.html">BIRCH href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/requirements.html#OPTIONAL">numpy href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/requirements.html#OPTIONAL">numpy href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/requirements.html#OPTIONAL">here.
    href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/requirements.html#OPTIONAL">here.
    href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blnalign">blnalign href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blnalign">blnalign href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blpalign">blpalign href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blpalign">blpalign customdoc.py: -------- firsttime.html customdoc.py: -------- BIRCH3.87announcement.html href="http://home.cc.umanitoba.ca/~psgendb/">BIRCH src="http://home.cc.umanitoba.ca/~psgendb/BMC.OA.gif" src="http://home.cc.umanitoba.ca/~psgendb/highlyaccessed-large.gif" href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/main.html">Finding href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/getgenome/Mauve.html">Comparing href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/getgenome/Last.html">Comparing href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/blncbi/blncbi.html">Finding href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/NCBI/PrimerBlast/PrimerBlast.html">in-silico href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/doc/BIRCH/birchadmin/inst.Web/inst.Web.html">set href="http://home.cc.umanitoba.ca/~psgendb/local/public_html/News/BIRCHNews.html">BIRCH href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/requirements.html#OPTIONAL">numpy href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/requirements.html#OPTIONAL">here.
    href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blnalign">blnalign href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blpalign">blpalign customdoc.py: -------- BIRCH3.80announcement.html href="http://home.cc.umanitoba.ca/~psgendb/">BIRCH src="http://home.cc.umanitoba.ca/~psgendb/BMC.OA.gif" src="http://home.cc.umanitoba.ca/~psgendb/highlyaccessed-large.gif" href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/main.html">Finding href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/getgenome/Mauve.html">Comparing href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/getgenome/Last.html">Comparing href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/blncbi/blncbi.html">Finding href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/NCBI/PrimerBlast/PrimerBlast.html">in-silico href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/doc/BIRCH/birchadmin/inst.Web/inst.Web.html">set href="http://home.cc.umanitoba.ca/~psgendb/local/public_html/News/BIRCHNews.html">BIRCH href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/requirements.html#OPTIONAL">numpy href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/requirements.html#OPTIONAL">here.
    href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blnalign">blnalign href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blpalign">blpalign customdoc.py: -------- localsystem.html Obtaining extra disk space Using High Performance Compute nodes customdoc.py: -------- BIRCH3.85announcement.html href="http://home.cc.umanitoba.ca/~psgendb/">BIRCH src="http://home.cc.umanitoba.ca/~psgendb/BMC.OA.gif" name="graphics1" src="http://home.cc.umanitoba.ca/~psgendb/highlyaccessed-large.gif" href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/main.html">Finding href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/getgenome/Mauve.html">Comparing href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/getgenome/Last.html">Comparing href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/blncbi/blncbi.html">Finding href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/NCBI/PrimerBlast/PrimerBlast.html">in-silico href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/doc/BIRCH/birchadmin/inst.Web/inst.Web.html">set href="http://home.cc.umanitoba.ca/~psgendb/local/public_html/News/BIRCHNews.html">BIRCH href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/requirements.html#OPTIONAL">numpy href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/requirements.html#OPTIONAL">here.
    href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blnalign">blnalign href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blpalign">blpalign customdoc.py: -------- BIRCH3.86announcement.html href="http://home.cc.umanitoba.ca/~psgendb/">BIRCH src="http://home.cc.umanitoba.ca/~psgendb/BMC.OA.gif" name="graphics1" src="http://home.cc.umanitoba.ca/~psgendb/highlyaccessed-large.gif" href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/main.html">Finding href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/getgenome/Mauve.html">Comparing href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/getgenome/Last.html">Comparing href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/bioLegato/blncbi/blncbi.html">Finding href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/tutorials/NCBI/PrimerBlast/PrimerBlast.html">in-silico href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/doc/BIRCH/birchadmin/inst.Web/inst.Web.html">set href="http://home.cc.umanitoba.ca/~psgendb/local/public_html/News/BIRCHNews.html">BIRCH href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/requirements.html#OPTIONAL">numpy href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/requirements.html#OPTIONAL">here.
    href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blnalign">blnalign href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html/tutorials/bioLegato/overview/bioLegato.interfaces.html#blpalign">blpalign ACGC ACGC.photos WhatNext customdoc.py: -------- WhatNext.html A. Running customdoc.py: -------- WhatNext.outline.html customdoc.py: -------- filetransfer.html paracel.demo customdoc.py: -------- paracel.demo.html News customdoc.py: -------- BIRCHNews.html href="http://home.cc.umanitoba.ca/~psgendb/local/public_html/BIRCH3.90announcement.html">BIRCH href="http://home.cc.umanitoba.ca/~psgendb/local/public_html/BIRCH3.87announcement.html" href="http://home.cc.umanitoba.ca/~psgendb/local/public_html/BIRCH3.85announcement.html" href="http://home.cc.umanitoba.ca/~psgendb/local/public_html/BIRCH3.80announcement.html" href="http://home.cc.umanitoba.ca/~psgendb/local/public_html/BIRCH3.70announcement.html">BIRCH href="http://home.cc.umanitoba.ca/~psgendb/local/public_html/BIRCH3.60announcement.html">the href="http://home.cc.umanitoba.ca/~psgendb/tutorials/bioLegato/overview/bioLegato.interfaces.html#blncbi">blncbi). href="http://home.cc.umanitoba.ca/~psgendb/birchadmin/blastdb/BLASTDB.html">http://home.cc.umanitoba.ca/~psgendb/birchadmin/blastdb/BLASTDB.html
    regarding this page to psgendb@cc.umanitoba.ca
    regarding this page to psgendb@cc.umanitoba.ca
    biolegato customdoc.py: -------- index.html href="http://home.cc.umanitoba.ca/~psgendb/tutorials/bioLegato/overview/overview.html">Overview
    href="http://home.cc.umanitoba.ca/~psgendb/">BIRCH system, a BioPCD customdoc.py: -------- BioPCD.html href="http://home.cc.umanitoba.ca/~psgendb/tutorials/bioLegato/overview/overview.html">BioPCD href="http://home.cc.umanitoba.ca/~psgendb/birchadmin/addprog/binaries.html#GDE">Tutorial: Download customdoc.py: -------- Download.html href="http://home.cc.umanitoba.ca/~psgendb/tutorials/bioLegato/overview/overview.html">http://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/BIRCH/getbirch_site/downloads.html
    birchdb database new oldlogs readlocks touched wspec computenodes customdoc.py: -------- ComputeNodes.html href="http://home.cc.umanitoba.ca/~psgendb">    {venus:/home/psgendb} sshcc
    {cc04:/home/psgendb}{venus:/home/psgendb}ssh {cc03:/home/psgendb}
    {cc03:/home/psgendb}cd {cc03:/home/psgendb/tutorials/bioLegato/database.sim}bldna
    {cc03:/home/psgendb}logout
    {venus:/home/psgendb}    Managing your UNIX disk space and quotas href="http\://home.cc.umanitoba.ca/~psgendb/birchhomedir/Using_Unix/saving_space.html">Managing your UNIX disk space and quotas facebook birch3.60 customdoc.py: -------- BIRCH3.60_facebook.html href="http://home.cc.umanitoba.ca/~psgendb/local/public_html/BIRCH3.60announcement.html">http://home.cc.umanitoba.ca/~psgendb/local/public_html/BIRCH3.60announcement.html birch3.70 customdoc.py: -------- BIRCH3.70_facebook.html href="http://home.cc.umanitoba.ca/~psgendb/local/public_html/BIRCH3.70announcement.html">http://home.cc.umanitoba.ca/~psgendb/local/public_html/BIRCH3.70announcement.html birch3.86 customdoc.py: -------- BIRCH3.86_facebook.html href="http://home.cc.umanitoba.ca/~psgendb/local/public_html/BIRCH3.86announcement.html" moz-do-not-send="true">http://home.cc.umanitoba.ca/~psgendb/local/public_html/BIRCH3.86announcement.html birch3.80 customdoc.py: -------- BIRCH3.80_facebook.html href="http://home.cc.umanitoba.ca/~psgendb/local/public_html/BIRCH3.80announcement.html" moz-do-not-send="true">http://home.cc.umanitoba.ca/~psgendb/local/public_html/BIRCH3.80announcement.html birch3.85 customdoc.py: -------- BIRCH3.85_facebook.html href="http://home.cc.umanitoba.ca/~psgendb/local/public_html/BIRCH3.80announcement.html" moz-do-not-send="true">http://home.cc.umanitoba.ca/~psgendb/local/public_html/BIRCH3.85announcement.html log4j2 customdoc.py: -------- log4j2_facebook.html birch3.87 customdoc.py: -------- BIRCH3.87_facebook.html href="http://home.cc.umanitoba.ca/~psgendb/local/public_html/BIRCH3.87announcement.html" moz-do-not-send="true">http://home.cc.umanitoba.ca/~psgendb/local/public_html/BIRCH3.87announcement.html findinfo customdoc.py: -------- findinfo.html remote commandline customdoc.py: -------- commandline.html href="http://home.cc.umanitoba.ca/~psgendb"> Return to href="https://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/ps-pulse-win-22.3r3.0-b19959-64bit-installer.zip">https://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/ps-pulse-win-22.3r3.0-b19959-64bit-installer.zip
    href="https://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/ps-pulse-mac-22.3r3.0-b19959-installer.zip">https://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/ps-pulse-mac-22.3r3.0-b19959-installer.zip
    href="https://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/ps-pulse-linux-22.3r3.0-b19959-64bit-installer.rpm">https://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/ps-pulse-linux-22.3r3.0-b19959-64bit-installer.rpm
    href="https://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/ps-pulse-linux-22.3r3.0-b19959-64bit-installer.deb">https://home.cc.umanitoba.ca/~psgendb/birchhomedir/FTP/ps-pulse-linux-22.3r3.0-b19959-64bit-installer.deb

    Return vnc mac2unix customdoc.py: -------- mac2unix.html href="http://home.cc.umanitoba.ca/~psgendb">See vncserver customdoc.py: -------- vnc.setup.html BIRCHReturn to VNC

    -rwx------   1 psgendb  psgendb       21 Jul  1  1999 xstartup*

    Return to BIRCH home page vncviewer customdoc.py: -------- vncviewer.html BIRCHReturn to

    BIRCHReturn to BIRCH home page windows2unix customdoc.py: -------- windows2unix.html href="http://home.cc.umanitoba.ca/~psgendb">frist
    Using keyboard-interactive authentication.
    Password:
    Last login: Wed Aug 19 13:30:15 2009 from agpc26.cc.umani
    Sun Microsystems Inc. SunOS 5.10 Generic January 2005
    mira [Omicron Ceti] a variable star in the constellation Cetus

    For pointers to useful information, type: help
    To change your password, type: passwd

    Erase set to delete.
    +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
    B I R C H ANNOUNCEMENTS

    15 Aug 09 GenBank 172.0 is now online.

    BIRCH WWW site: http://home.cc.umanitoba.ca/~psgendb
    NEWSGROUP: man.molbio - discussions of BIRCH, general mol. bio. in Manitoba
    +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++

    {mira:/home/plants/frist} xterm customdoc.py: -------- xterminal.html BIRCHBIRCHReturn to BIRCH home page setup.gnome customdoc.py: -------- desktop.html href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/local-generic/public_html/setup.gnome/textedit.html">Textedit

    Return to BIRCH href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca
    href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca
    customdoc.py: -------- setup.html href="http://home.cc.umanitoba.ca/~psgendb/birchhomedir/public_html">Connecting href="http://home.cc.umanitoba.ca/~psgendb/newuser/setup.newuser.html">newuser 

    /home/psgendb/admin/newuser
    /home/psgendb/admin/nobirch
    setup.mac customdoc.py: -------- desktop.html

    Return to BIRCH href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca
    href="mailto:psgendb@cc.umanitoba.ca">psgendb@cc.umanitoba.ca
    customdoc.py: -------- setup.html 

    /home/psgendb/admin/newuser
    /home/psgendb/admin/nobirch
    setup.mate customdoc.py: -------- desktop.html
  • http://home.cc.umanitoba.ca/~psgendb/

    • Return to BIRCH home customdoc.py: -------- setup.html Return to BIRCH 

    /home/psgendb/admin/newuser
    /home/psgendb/admin/nobirch
    **** Program tace, compiled on: Jul 1 2003 16:37:44 **** **** Using ACEDB 4_9t, compiled on: Jul 1 2003 16:34:06 **** Code by: Jean Thierry-Mieg (CNRS, France) mieg@crbm.cnrs-mop.fr Richard Durbin (Sanger Centre, UK) rd@sanger.ac.uk Simon Kelley (Sanger Centre, UK) srk@sanger.ac.uk Ed Griffiths (Sanger Centre, UK) edgrif@sanger.ac.uk You may redistribute this program and database subject to the conditions in the accompanying copyright file. Anyone interested in maintaining an up-to-date version should contact one of the authors at the above email addresses. // Database directory: /home/psgendb/public_html/birchdb acedb> // Found 24 objects in this class // 24 Active Objects acedb> // 24 objects dumped // 24 Active Objects acedb> // Found 53 objects in this class // 53 Active Objects acedb> // 53 objects dumped // 53 Active Objects acedb> // Found 254 objects in this class // 254 Active Objects acedb> // 254 objects dumped // 254 Active Objects acedb> // Found 421 objects in this class // 421 Active Objects acedb> // 421 objects dumped // 421 Active Objects acedb> // A bientot cleanup.sh finished **** Program tace, compiled on: Jul 1 2003 16:37:44 **** **** Using ACEDB 4_9t, compiled on: Jul 1 2003 16:34:06 **** Code by: Jean Thierry-Mieg (CNRS, France) mieg@crbm.cnrs-mop.fr Richard Durbin (Sanger Centre, UK) rd@sanger.ac.uk Simon Kelley (Sanger Centre, UK) srk@sanger.ac.uk Ed Griffiths (Sanger Centre, UK) edgrif@sanger.ac.uk You may redistribute this program and database subject to the conditions in the accompanying copyright file. Anyone interested in maintaining an up-to-date version should contact one of the authors at the above email addresses. // Database directory: /home/psgendb/local/public_html/birchdb // Database has non-native byte-order: swapping acedb> // Found 22 objects in this class // 22 Active Objects acedb> // 22 objects dumped // 22 Active Objects acedb> // Found 21 objects in this class // 21 Active Objects acedb> // 21 objects dumped // 21 Active Objects acedb> // Found 58 objects in this class // 58 Active Objects acedb> // 58 objects dumped // 58 Active Objects acedb> // Found 122 objects in this class // 122 Active Objects acedb> // 122 objects dumped // 122 Active Objects acedb> // A bientot cleanup.sh finished setup.xfce customdoc.py: -------- desktop.html
  • http://home.cc.umanitoba.ca/~psgendb/

    • Return to BIRCH href="http://home.cc.umanitoba.ca/~psgendb/local/public_html/setup.xfce/FirstTimeCCL.mp4"> href="http://home.cc.umanitoba.ca/~psgendb/local/public_html/setup.xfce/FirstTimeCCL.mp4">Connecting 

    /home/psgendb/admin/newuser
    /home/psgendb/admin/nobirch
    visa customdoc.py: -------- visa.html     $doc/visa/userman.asc
    BioStars 3.86 customdoc.py: -------- BioStars-BIRCHv3.86.html http://home.cc.umanitoba.ca/~psgendb/local/public_html/BIRCH3.86announcement.html
    cgi-bin OLDLIST: ['%7E', 'http://home.cc.umanitoba.ca/~psgendb/birchhomedir/BIRCHDEV/public_html', 'http://home.cc.umanitoba.ca/~psgendb/birchhomedir/BIRCHDEV', 'psgendb@cc.umanitoba.ca', '/home/psgendb/BIRCHDEV', 'psgendb'] NEWLIST: ['~', 'http\\://home.cc.umanitoba.ca/~psgendb/birchhomedir', 'http\\://home.cc.umanitoba.ca/~psgendb', 'psgendb@cc.umanitoba.ca', '/home/psgendb', 'psgendb'] ********************Htmldoc******************** Running htmldoc.py ***** obtaining parameters htmldoc.py: Reading $BIRCH from BIRCH.properties htmldoc.py: BIRCHPATH set to: /home/psgendb htmldoc.py: BIRCH_PLATFORM set to: linux-x86_64 ***** reading BIRCH.properties P.DOCPREFIX: http://home.cc.umanitoba.ca/~psgendb ***** dumping to ACE ***** reading categories Categories:24 CATDICT size: 25 ***** reading packages Packages:53 PKGDICT size: 66 ***** reading programs Progs:254 PROGDICT size: 289 ***** reading documentation filenames ***** freshdir ***** read OK ***** ***** writing category pages ***** writing program pages ***** writing package pages ********************Newuser******************** Running newuser getting home directory Writing .login Writing .cshrc & .tcshrc Writing Bourne Shell .profile, .bash_profile, .zshrc, etc. Setting up VNC Creating launcher links PLATFORM: linux-x86_64 Made symbolic link to launcher on desktop Made symbolic link to launcher on desktop linklauncher.py: completed execution normally. Done - newuser.py! Logout and login again so that the changes can take effect. Running newuser ********************** birch_install DONE! ******************************* Installation took 18 minutes. Command finished execution, return status: 0 Update completed successfully Installation finished