AFLPcore
Class RawView

java.lang.Object
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  +--AFLPcore.Operation
        |
        +--AFLPcore.GelOperation
              |
              +--AFLPcore.RawView

public class RawView

extends GelOperation

This class resets the display so that the original data is used instead of normalized data. It is done by simply switching the trace used by all of the lanes.

Fields inherited from class AFLPcore.Operation

descript, helpFile, name, options

Constructor Summary

RawView()
Creates a new RawView object.

Method Summary

void	doGelOp(Gel gel) This normalizes all of the lanes in the Gel based on the signal stength of each lane.
java.lang.String	getDescription() Gives a one sentence description of this gel operation.
java.lang.String	getHelpFile() Gives a file that is the help file for this gel operation
java.lang.String	getName() Gives the name of this gel operation
Option[]	getOptions() No options for this operation, so null is returned.
void	setOptions(Option[] opts) Since there are no options for this operation, this method will do absolutely nothing.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RawView

public RawView()

Creates a new RawView object.

Method Detail

doGelOp

public void doGelOp(Gel gel)

This normalizes all of the lanes in the Gel based on the signal stength of each lane.

Overrides:

doGelOp in class GelOperation

Parameters:

gel - the gel to normalize.

getOptions

public Option[] getOptions()

No options for this operation, so null is returned.

Overrides:

getOptions in class Operation

Returns:

null

setOptions

public void setOptions(Option[] opts)

Since there are no options for this operation, this method will do absolutely nothing.

Overrides:

setOptions in class Operation

Following copied from class: AFLPcore.Operation

Parameters:

opts - the values for the options that this operation understands.

getName

public java.lang.String getName()

Gives the name of this gel operation

Overrides:

getName in class Operation

Returns:

the name.

getDescription

public java.lang.String getDescription()

Gives a one sentence description of this gel operation.

Overrides:

getDescription in class Operation

Returns:

the description

getHelpFile

public java.lang.String getHelpFile()

Gives a file that is the help file for this gel operation

Overrides:

getHelpFile in class Operation

Returns:

a plaintext of html file containing help information