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NUCLEIC GENE FINDING |
Predictions of genes and other genomic features
| Program name | Description |
|---|---|
| checktrans | Reports STOP codons and ORF statistics of a protein |
| getorf | Finds and extracts open reading frames (ORFs) |
| marscan | Finds matrix/scaffold recognition (MRS) signatures in DNA sequences |
| plotorf | Plot potential open reading frames in a nucleotide sequence |
| showorf | Display a nucleotide sequence and translation in pretty format |
| sixpack | Display a DNA sequence with 6-frame translation and ORFs |
| syco | Draw synonymous codon usage statistic plot for a nucleotide sequence |
| tcode | Identify protein-coding regions using Fickett TESTCODE statistic |
| wobble | Plot third base position variability in a nucleotide sequence |