AFLPcore
Class PeakLocate

java.lang.Object
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  +--AFLPcore.Operation
        |
        +--AFLPcore.PeakLocate

Direct Known Subclasses:

HighestPeakLocate

public abstract class PeakLocate

extends Operation

This is an abstract class that should be extended to provide different ways of finding the peaks in a lane. Examples include simply waiting for a change in slope or something more complicated like a neural net. The MIN and MAX should always specify the first and last data points in the lane given.

Field Summary

static double	MAX Specifies the largest value in a lane is to be used.
static double	MIN Specifies the smallest value in a lane is to be used.

Fields inherited from class AFLPcore.Operation

descript, helpFile, name, options

Constructor Summary

PeakLocate()

Method Summary

abstract void

findPeak(DataList lanes, double minSize, double maxSize) Finds the peaks in the given lanes and only finds those whose size is greater than or equal to minSize and less than or equal to maxSize.

Methods inherited from class AFLPcore.Operation

getDescription, getHelpFile, getName, getOptions, setOptions

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

MIN

public static double MIN

Specifies the smallest value in a lane is to be used.

MAX

public static double MAX

Specifies the largest value in a lane is to be used.

Constructor Detail

PeakLocate

public PeakLocate()

Method Detail

findPeak

public abstract void findPeak(DataList lanes,
                              double minSize,
                              double maxSize)

Finds the peaks in the given lanes and only finds those whose size is greater than or equal to minSize and less than or equal to maxSize. The peaks that are found will be stored in the given lanes.

Parameters:

lanes - the list of lanes that the algorithm should look for peaks in.

minSize - the minimum size of any peak. If the value MIN is given, then the smallest size in the lane will be used.

maxSize - the maximum size of any peak. If the value MAX is given, then the largest size in the lane will be used.