AFLPcore
Class PeakMgr

java.lang.Object
  |
  +--AFLPcore.Manager
        |
        +--AFLPcore.PeakMgr

public class PeakMgr

extends Manager

This class contains a list of PeakLocates which can be used to find peaks in the lanes/gel. Each one will implement a different algorithm for finding the peaks. Each filter is associated with a String, which represents its name. The pairing features are inherited from the Manager class.

The filters can be retrieved based on their name, and a lists of names can be obtained from the PeakMgr. The PeakLocate will contain addtional information about how it works.

See Also:

PeakLocate, Manager

Constructor Summary

PeakMgr()
Creates a new PeakMgr, with a default capacity of 4 and a loadFactor of 1.0.

PeakMgr(int capacity, float loadFactor)
Creates a new PeakMgr with the specified values.

Method Summary

boolean

classTypeOk(Operation op) Checks to see if the specified operation is a PeakLocate.

Methods inherited from class AFLPcore.Manager

add, get, getDefault, getDefaultName, getNames, setDefault

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PeakMgr

public PeakMgr()

Creates a new PeakMgr, with a default capacity of 4 and a loadFactor of 1.0. Sets up the Hashtable for the String/PeakLocate pairs.

PeakMgr

public PeakMgr(int capacity,
               float loadFactor)
        throws java.lang.IllegalArgumentException

Creates a new PeakMgr with the specified values.

Parameters:

capacity - the initial number of filters that can be stored.

loadFactor - controls memory efficiency vs. lookup speed, it must be between 0.0 and 1.0, where 1.0 has the greatest memory efficiency

Throws:

java.lang.IllegalArgumentException - when capacitly is less than zero or the loadFactor is out of bounds.

Method Detail

classTypeOk

public boolean classTypeOk(Operation op)

Checks to see if the specified operation is a PeakLocate.

Overrides:

classTypeOk in class Manager

Returns:

true if it is, false if it is not.

See Also:

PeakLocate