Survival analysis, including penalised likelihood.

Documentation for package ‘survival’ version 2.35-4

Help Pages

A B C D E F H I J K L M N O P Q R S T U V misc

-- A --

aareg	Aalen's additive regression model for censored data
aml	Acute Myelogenous Leukemia survival data
anova.coxph	Analysis of Deviance for a Cox model.
anova.coxphlist	Analysis of Deviance for a Cox model.
anova.survreg	Regression for a Parametric Survival Model
anova.survreglist	Regression for a Parametric Survival Model
as.character.Surv	Create a Survival Object
as.data.frame.Surv	Create a Survival Object
as.matrix.Surv	Create a Survival Object
attrassign	Create new-style "assign" attribute
attrassign.default	Create new-style "assign" attribute
attrassign.lm	Create new-style "assign" attribute

-- B --

basehaz	Compute the baseline survival curve for a Cox model
bladder	Bladder Cancer Recurrences
bladder1	Bladder Cancer Recurrences
bladder2	Bladder Cancer Recurrences

-- C --

cancer	NCCTG Lung Cancer Data
cch	Fits proportional hazards regression model to case-cohort data
cgd	Chronic Granulotomous Disease data
clogit	Conditional logistic regression
cluster	Identify clusters.
colon	Chemotherapy for Stage B/C colon cancer
cox.zph	Test the Proportional Hazards Assumption of a Cox Regression
coxph	Fit Proportional Hazards Regression Model
coxph.control	Ancillary arguments for controling coxph fits
coxph.detail	Details of a Cox Model Fit
coxph.getdata	Fit Proportional Hazards Regression Model
coxph.object	Proportional Hazards Regression Object
coxph.penalty	Fit Proportional Hazards Regression Model

-- D --

dsurvreg

Distributions available in survreg.

-- E --

extractAIC.coxph.penal

Proportional Hazards Regression Object

-- F --

format.Surv	Create a Survival Object
frailty	Random effects terms
frailty.gamma	Random effects terms
frailty.gaussian	Random effects terms
frailty.t	Random effects terms

-- H --

heart

Stanford Heart Transplant data

-- I --

is.na.ratetable	Ratetable reference in formula
is.na.Surv	Create a Survival Object
is.ratetable	Verify that an object is of class ratetable.
is.Surv	Create a Survival Object

-- J --

jasa	Stanford Heart Transplant data
jasa1	Stanford Heart Transplant data

-- K --

kidney

Kidney catheter data

-- L --

labels.survreg	Regression for a Parametric Survival Model
leukemia	Acute Myelogenous Leukemia survival data
lines.survfit	Add Lines or Points to a Survival Plot
lung	NCCTG Lung Cancer Data

-- M --

Math.ratetable	Verify that an object is of class ratetable.
Math.Surv	Create a Survival Object
mgus	Monoclonal gammapothy data
mgus1	Monoclonal gammapothy data
mgus2	Monoclonal gammapothy data
model.frame.coxph	Fit Proportional Hazards Regression Model
model.frame.survreg	Regression for a Parametric Survival Model

-- N --

nwtco

Data from the National Wilm's Tumor Study

-- O --

Ops.ratetable	Verify that an object is of class ratetable.
Ops.Surv	Create a Survival Object
ovarian	Ovarian Cancer Survival Data

-- P --

pbc	Mayo Clinic Primary Biliary Cirrhosis Data
pbcseq	Mayo Clinic Primary Biliary Cirrhosis, sequential data
plot.aareg	Plot an aareg object.
plot.cox.zph	Graphical Test of Proportional Hazards
plot.survfit	Plot Method for 'survfit'
points.survfit	Add Lines or Points to a Survival Plot
predict.coxph	Predictions for a Cox model
predict.coxph.penal	Predictions for a Cox model
predict.survreg	Predicted Values for a 'survreg' Object
predict.survreg.penal	Predicted Values for a 'survreg' Object
print.aareg	Print an aareg object
print.cox.zph	Test the Proportional Hazards Assumption of a Cox Regression
print.coxph	Proportional Hazards Regression Object
print.coxph.null	Fit Proportional Hazards Regression Model
print.coxph.penal	Fit Proportional Hazards Regression Model
print.ratetable	Ratetable reference in formula
print.summary.coxph	Print method for summary.coxph objects
print.summary.survfit	Print Survfit Summary
print.summary.survreg	Regression for a Parametric Survival Model
print.Surv	Create a Survival Object
print.survdiff	Test Survival Curve Differences
print.survexp	Compute Expected Survival
print.survfit	Print a Short Summary of a Survival Curve
print.survreg	Parametric Survival Model Object
print.survreg.penal	Regression for a Parametric Survival Model
pspline	Smoothing splines using a pspline basis
psurvreg	Distributions available in survreg.
pyears	Person Years

-- Q --

qsurvreg

Distributions available in survreg.

-- R --

ratetable	Ratetable reference in formula
rats	Rat data from Gail et al.
residuals.coxph	Calculate Residuals for a 'coxph' Fit
residuals.coxph.null	Calculate Residuals for a 'coxph' Fit
residuals.coxph.penal	Calculate Residuals for a 'coxph' Fit
residuals.survreg	Compute Residuals for 'survreg' Objects
residuals.survreg.penal	Compute Residuals for 'survreg' Objects
ridge	Ridge regression

-- S --

stanford2	More Stanford Heart Transplant data
strata	Identify Stratification Variables
summary.aareg	Summarize an aareg fit
summary.coxph	Summary method for Cox models
summary.coxph.penal	Fit Proportional Hazards Regression Model
summary.ratetable	Ratetable reference in formula
Summary.Surv	Create a Survival Object
summary.survfit	Summary of a Survival Curve
summary.survreg	Parametric Survival Model Object
Surv	Create a Survival Object
survConcordance	Compute a concordance measure.
survdiff	Test Survival Curve Differences
survexp	Compute Expected Survival
survexp.az	Census Data Sets for the Expected Survival and Person Years Functions
survexp.azr	Census Data Sets for the Expected Survival and Person Years Functions
survexp.fit	Compute Expected Survival
survexp.fl	Census Data Sets for the Expected Survival and Person Years Functions
survexp.flr	Census Data Sets for the Expected Survival and Person Years Functions
survexp.mn	Census Data Sets for the Expected Survival and Person Years Functions
survexp.mnwhite	Census Data Sets for the Expected Survival and Person Years Functions
survexp.us	Census Data Sets for the Expected Survival and Person Years Functions
survexp.usr	Census Data Sets for the Expected Survival and Person Years Functions
survexp.wnc	Census Data Sets for the Expected Survival and Person Years Functions
survfit	Compute a Survival Curve for Censored Data
survfit.coxph	Compute a Survival Curve from a Cox model
survfit.formula	Compute a Survival Curve for Censored Data
survfit.object	Survival Curve Object
survobrien	O'Brien's Test for Association of a Single Variable with Survival
survReg	Regression for a Parametric Survival Model
survreg	Regression for a Parametric Survival Model
survreg.control	Package options for survreg and coxph
survreg.distributions	Parametric Survival Distributions
survreg.object	Parametric Survival Model Object
survregDtest	Verify a survreg distribution
survSplit	Split a survival data set at specified times

-- T --

tcut	Factors for person-year calculations
tobin	Tobin's Tobit data

-- U --

untangle.specials

Help Process the 'specials' Argument of the 'terms' Function.

-- V --

vcov.coxph	Fit Proportional Hazards Regression Model
vcov.survreg	Regression for a Parametric Survival Model
veteran	Veterans' Administration Lung Cancer study

-- misc --

[.cox.zph	Test the Proportional Hazards Assumption of a Cox Regression
[.coxph.penalty	Fit Proportional Hazards Regression Model
[.ratetable	Ratetable reference in formula
[.ratetable2	Ratetable reference in formula
[.Surv	Create a Survival Object
[.survfit	Compute a Survival Curve for Censored Data
[.tcut	Factors for person-year calculations