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How does QUASI work?
(1). Software:
- Stand-alone
and excutable
- Run only
under DOS
- Command line......
(2).
Input:
- Multiple
aligned condon format
atc ttc att ttc tat tat ttt ttt ttc
tac ...........
- accepted
charactors: A/a, T/t, C/c, G/g;
special
charators such as N, M....etc
also allowed
- gaps allowed
- no stop codons
allowed
- each codon colum
can't be less than the minimum
nubmers of codons required
- no limits of the
numbers of sequences analyzed
(3).
Output:
Capital: positively selected
Lowcase: neutral
Negatively selected variants are not shown
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