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Minimum Sequences
(BMC Bioinformtics
2001, 2:1)
- "For the most-typical
codon, the expected R:S is 1:3, >= 3 mutations required"
- "For cta or
ctg, only 2 mutations required"
- For
negative selection detection, much more mutatations required (> 10)
False-positive
Testing
(BMC Bioinformtics 2001,
2:1)
- Conduct simulation
by generating 10 sets of
300 sequences of length 999 (EVOLVER
(PAML) )
- The average branch
length of each set varies in
0.1 intervals from 0.1 to 1.0
- False positive
persentage is calculated and plot
against average branch length
derived from Dr. Jeffrey J Stewart, 2001
False
positive
percentage (F) = false
psoitives / (false positive + neutral drift variants)
- F <~2%, if branch lengths
are in range of 0.1 --- 1.0
- F >~70%, if branch length
is at 0.001
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