Uses of Class
AFLPcore.Gel

Packages that use Gel

AFLPcore
AFLPgui

Uses of Gel in AFLPcore

Methods in AFLPcore that return Gel

abstract Gel	ImportFilter.readGel(java.io.File inputFile) This is the method that is called to preform the actual reading of the file.
Gel	SCFFilter.readGel(java.io.File inputFile) This filter does not read gels.
Gel	CEQLaneFilter.readGel(java.io.File inputFile) This filter does not read gels.
Gel	ABILaneFilter.readGel(java.io.File inputFile) This filter does not read gels.
Gel	ABI3x00Filter.readGel(java.io.File inputFile) This filter does not read gels.

Methods in AFLPcore with parameters of type Gel

abstract void	GelOperation.doGelOp(Gel gel) This performs some sort of operation on a gel.
void	SignalNorm.doGelOp(Gel gel) This normalizes all of the lanes in the Gel based on the signal stength of each lane.
abstract java.lang.String	AnalysisOp.analyze(Gel gel) This method should provide some sort of information about the gel.
java.lang.String	BinAnalysis.analyze(Gel gel) Provides an anlysis for the the specified gel.
void	PartialSigNorm.doGelOp(Gel gel) This normalizes all of the lanes in the Gel based on the signal stength of each lane.
void	RawView.doGelOp(Gel gel) This normalizes all of the lanes in the Gel based on the signal stength of each lane.
java.lang.String	MapMakerAnalysis.analyze(Gel gel) Provides an anlysis for the the specified gel.

Uses of Gel in AFLPgui

Fields in AFLPgui declared as Gel

protected Gel

FragmentMap.gel

Methods in AFLPgui with parameters of type Gel

void	AnalysisView.init(Gel gel) This runs whatever analysis operation is selected, or the default if none has been choosen yet.

Constructors in AFLPgui with parameters of type Gel

GelView(Gel gel, java.awt.Frame topWindow)
Creates a new viewable object of the specified gel