Uses of Class
AFLPcore.Option

Packages that use Option

AFLPcore
AFLPgui

Uses of Option in AFLPcore

Fields in AFLPcore declared as Option

protected Option[]

Operation.options

Methods in AFLPcore that return Option

abstract Option[]	Operation.getOptions() Retrieves the options associated with this operation.
Option[]	NoSize.getOptions() There are no options for this sizing function.
Option[]	SignalNorm.getOptions() No options for this operation, so null is returned.
Option[]	SizeStandard.getOptions() Defined to satisfy abstract parent class, but not really applicable in this case.
Option[]	SCFFilter.getOptions() Returns the options for this filter.
Option[]	LinearCutoff.getOptions() Returns the options/parameters for this Cutoff function.
Option[]	CEQLaneFilter.getOptions() Returns the options for this filter, which includes the color of the data, the size function to use, and the size standard.
Option[]	ABILaneFilter.getOptions() Returns the options for this filter, which includes the color of the data, the size function to use, and the size standard.
Option[]	BinAnalysis.getOptions() No options for this operation, so null is returned.
Option[]	PartialSigNorm.getOptions() No options for this operation, so null is returned.
Option[]	SegregatingScore.getOptions() Gives the options for this scoring.
Option[]	HighestPeakLocate.getOptions() Gives the options, but since there aren't any, this is always null.
Option[]	RawView.getOptions() No options for this operation, so null is returned.
Option[]	ABI3x00Filter.getOptions() Returns the options for this filter, which includes the color of the data, the size function to use, and the size standard.
Option[]	MapMakerAnalysis.getOptions() No options for this operation, so null is returned.
Option[]	LocalSouthern.getOptions() There are no options for this sizing function.

Methods in AFLPcore with parameters of type Option

abstract void	Operation.setOptions(Option[] opts) This is used to set the options to the specified values.
void	NoSize.setOptions(Option[] opts) Since there are no options, this method doesn't do much.
void	SignalNorm.setOptions(Option[] opts) Since there are no options for this operation, this method will do absolutely nothing.
void	SizeStandard.setOptions(Option[] opts) Defined to satisfy abstract parent class, but not really applicable in this case.
void	SCFFilter.setOptions(Option[] opts) Sets the parameters for the filter to the specified values.
void	LinearCutoff.setOptions(Option[] opts) Set the value for the cutoff.
void	CEQLaneFilter.setOptions(Option[] opts) Sets the parameters for the filter to the specified values, including color.
void	ABILaneFilter.setOptions(Option[] opts) Sets the parameters for the filter to the specified values, including color.
void	BinAnalysis.setOptions(Option[] opts) Since there are no options for this operation, this method will do absolutely nothing.
void	PartialSigNorm.setOptions(Option[] opts) Since there are no options for this operation, this method will do absolutely nothing.
void	SegregatingScore.setOptions(Option[] opts) Sets the option to the specified values.
void	HighestPeakLocate.setOptions(Option[] opts) Since this operations does not have any options, the method does not do anything.
void	RawView.setOptions(Option[] opts) Since there are no options for this operation, this method will do absolutely nothing.
void	ABI3x00Filter.setOptions(Option[] opts) Sets the parameters for the filter to the specified values, including color.
void	MapMakerAnalysis.setOptions(Option[] opts) Since there are no options for this operation, this method will do absolutely nothing.
void	LocalSouthern.setOptions(Option[] opts) Since there are no options, this method doesn't do much.

Uses of Option in AFLPgui

Methods in AFLPgui that return Option

Option[]

OptionDialog.getOptions() Gives the options as they were set by the user in the dialog box.

Methods in AFLPgui with parameters of type Option

void	OptionDialog.addOption(Option option, int pos, int index) Creates a GUI component for the specified option and places it at the specified position.

Constructors in AFLPgui with parameters of type Option

OptionDialog(Option[] opts, java.awt.Frame parent)
Creates a new option dialog with the specified parameters.

OptionDialog(Option[] opts, java.awt.Frame parent, java.lang.String title)
Creates a new option dialog with the specified parameters