Hierarchy For All Packages

Package Hierarchies:

AFLPcore, AFLPgui

Class Hierarchy

• class java.lang.Object
  • class java.util.AbstractCollection (implements java.util.Collection)
    • class java.util.AbstractList (implements java.util.List)
      • class java.util.Vector (implements java.lang.Cloneable, java.util.List, java.io.Serializable)
        • class AFLPcore.DataList
  • class java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • class java.awt.Button (implements javax.accessibility.Accessible)
      • class AFLPgui.ImgButton (implements java.awt.event.MouseListener)
    • class java.awt.Canvas (implements javax.accessibility.Accessible)
      • class AFLPgui.CutoffSlider (implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
      • class AFLPgui.GelView (implements java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
    • class java.awt.Container
      • class java.awt.Panel (implements javax.accessibility.Accessible)
        • class AFLPgui.AnalysisView (implements java.awt.event.ItemListener)
        • class AFLPgui.Bar
          • class AFLPgui.ButtonBar
        • class AFLPgui.ControlBar (implements java.awt.event.ActionListener)
        • class AFLPgui.GraphView (implements java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
        • class AFLPgui.Thumbnail (implements java.awt.event.ActionListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
        • class AFLPgui.TraceView (implements java.awt.event.ActionListener)
      • class java.awt.Window (implements javax.accessibility.Accessible)
        • class java.awt.Dialog
          • class AFLPgui.AboutDialog (implements java.awt.event.ActionListener, java.awt.event.WindowListener)
          • class AFLPgui.BinDialog (implements java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.KeyListener, java.awt.event.WindowListener)
          • class AFLPgui.CutoffDialog (implements java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.KeyListener, java.awt.event.WindowListener)
          • class AFLPgui.EntryDialog (implements java.awt.event.ActionListener, java.awt.event.KeyListener, java.awt.event.WindowListener)
          • class AFLPgui.MultiFileDialog (implements java.awt.event.ActionListener, java.awt.event.WindowListener)
          • class AFLPgui.OptionDialog (implements java.awt.event.ActionListener, java.awt.event.WindowListener)
        • class java.awt.Frame (implements java.awt.MenuContainer)
          • class AFLPgui.FragmentMap (implements java.awt.event.ActionListener, java.awt.event.WindowListener)
  • class AFLPcore.Constants
  • class AFLPcore.Data
    • class AFLPcore.Gel
    • class AFLPcore.Lane
    • class AFLPcore.SortableData
      • class AFLPcore.Bin
      • class AFLPcore.Cutoff (implements java.lang.Cloneable)
      • class AFLPcore.Peak
  • class AFLPcore.FeatureList
  • class AFLPgui.Graph
    • class AFLPgui.BarGraph
    • class AFLPgui.ScatterGraph
  • class AFLPcore.Manager
    • class AFLPcore.AnalysisMgr
    • class AFLPcore.BinOpMgr
    • class AFLPcore.CutoffMgr
    • class AFLPcore.GelOpMgr
    • class AFLPcore.ImportMgr
    • class AFLPcore.LaneOpMgr
    • class AFLPcore.PeakMgr
    • class AFLPcore.ScoreManager
    • class AFLPcore.SizeMgr
    • class AFLPcore.StandardMgr
  • class AFLPcore.Operation
    • class AFLPcore.AnalysisOp (implements java.lang.Cloneable)
      • class AFLPcore.BinAnalysis
      • class AFLPcore.MapMakerAnalysis
    • class AFLPcore.BinOperation
    • class AFLPcore.CutoffFunction (implements java.lang.Cloneable)
      • class AFLPcore.LinearCutoff
    • class AFLPcore.GelOperation
      • class AFLPcore.PartialSigNorm
      • class AFLPcore.RawView
      • class AFLPcore.SignalNorm
    • class AFLPcore.ImportFilter
      • class AFLPcore.ABI3x00Filter
      • class AFLPcore.ABILaneFilter
      • class AFLPcore.CEQLaneFilter
      • class AFLPcore.SCFFilter
    • class AFLPcore.LaneOperation
    • class AFLPcore.PeakLocate
      • class AFLPcore.HighestPeakLocate
    • class AFLPcore.ScoreFunction (implements java.lang.Cloneable)
      • class AFLPcore.SegregatingScore
    • class AFLPcore.SizeFunction (implements java.lang.Cloneable)
      • class AFLPcore.LocalSouthern
      • class AFLPcore.NoSize
    • class AFLPcore.SizeStandard
  • class AFLPcore.Option
  • class AFLPcore.ProgOptions
  • class AFLPcore.SearchReturn
  • class AFLPgui.TextPrinter
  • class java.lang.Throwable (implements java.io.Serializable)
    • class java.lang.Error
      • class AFLPcore.ListNotSearchableError
      • class AFLPcore.MissingParameterError
      • class AFLPcore.NoBrowserException
      • class AFLPcore.NoDataError
      • class AFLPcore.PrettyInsignificantError
      • class AFLPcore.ScanCalcError
      • class AFLPcore.ScoringFailure
  • class AFLPcore.TracePeakFinder
  • class AFLPcore.TracePoint