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  Laboratory of RNA Biology
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We are interested in understanding how the different fragments of a gene are selectively combined (spliced) to produce multiple products in biology and diseases.
This process, called pre-mRNA splicing, has profound implications in the evolution and functional complexity of genes/gene products.  Its disruption is a cause of human genetic diseases by many mutations and also of the aberrant splicing in cancers. Our past research has focused on the molecular basis of adaptive splicing, likely involved in cell adaptation, neuron homeostasis and neurological diseases. This has also allowed us to discover and extend the scope to a novel class of introns/splice sites (REPA-harbouring) contributing to the evolution of alternative splicing, gene product diversity or to the prevention of aberrant splicing in human health/diseases. Here are more DETAILS. Particularly welcome to join us are students with backgrounds in biochemistry, genetics, computer science or statistics.


Keywords: molecular biology, RNA, processing, alternative splicing, cryptic splicing, transcriptome integrity, hnRNP, gene regulation, gene expression, evolution, proteomic diversity, complexity, splicing factors, protein kinases, cell signaling, neurons, endocrine cells, SNP, mutation, cancer, GWAS, human health/genetic diseases


Highlights of some of the findings by the lab:

hs3ssbar


BP
Splice Site Matrices of >1000 Species/lineages

REPAG_GenomesR38R91


 REPAG
(Right-click image to view details)

The REPAG element specifically among mammals
(Sohail M., and Xie J. Molecular & Cellular Biology, 2015, 35(12): 2203-2214)

Adaptive splicing
(Right-click to view details)

Adaptive splicing

CaRRE
(Right-click image to view details)

The CaRRE element among vertebrates (Liu GD, et al., J. Biol. Chem. 2012, 287:22709–22716)

STREX model
Molecular basis of the depolarization-regulated alternative splicing of the STREX exon of the Slo1 gene

hnrnpl-prolactin
Importance of proper splicing control in hormone production: aberrant splice variant of prolactin (right) due to the loss of hnRNP L

REPA

A new group of introns: REPA element 'inserted' between the Py and 3'AG and its effects on alternative splicing

hREPAG
Consensus of 1000 human REPAG intron ends (Credit: Aydan Wang)


*Research in this lab has been supported by CIHR , NCIC, CBCF, NSERC, MMSF, MHRC and CFI.


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Faculty of Graduate Studies

Department of Physiology & Pathophysiology

College of Medicine

Faculty of Health Sciences

University of Manitoba